View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0811_low_21 (Length: 400)

Name: NF0811_low_21
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0811_low_21
NF0811_low_21
[»] chr4 (2 HSPs)
chr4 (28-220)||(3938423-3938615)
chr4 (27-220)||(45066494-45066687)
[»] chr7 (5 HSPs)
chr7 (27-220)||(33623532-33623725)
chr7 (28-220)||(33631639-33631831)
chr7 (28-220)||(18261557-18261749)
chr7 (31-119)||(29456740-29456828)
chr7 (80-137)||(7478356-7478413)
[»] chr3 (4 HSPs)
chr3 (28-211)||(22163626-22163809)
chr3 (28-220)||(3423468-3423656)
chr3 (145-220)||(30280774-30280849)
chr3 (28-66)||(43191696-43191734)
[»] scaffold0240 (1 HSPs)
scaffold0240 (28-220)||(17364-17556)
[»] chr5 (7 HSPs)
chr5 (28-220)||(7279800-7279992)
chr5 (51-220)||(41099841-41100010)
chr5 (28-220)||(39045417-39045604)
chr5 (88-179)||(41701443-41701534)
chr5 (28-122)||(39790297-39790391)
chr5 (56-119)||(13941198-13941261)
chr5 (28-56)||(41093519-41093547)
[»] chr2 (4 HSPs)
chr2 (267-400)||(41071155-41071288)
chr2 (29-122)||(6839481-6839574)
chr2 (55-107)||(11814941-11814993)
chr2 (220-256)||(41071107-41071142)
[»] chr6 (3 HSPs)
chr6 (28-137)||(1161217-1161326)
chr6 (28-108)||(35164516-35164596)
chr6 (31-139)||(24318722-24318830)
[»] chr1 (2 HSPs)
chr1 (31-137)||(49821282-49821384)
chr1 (46-122)||(50716124-50716200)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 28 - 220
Target Start/End: Original strand, 3938423 - 3938615
Alignment:
Q  28 cattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattctcttaatagagaaattag 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3938423 cattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattctcttaatagagaaattag 3938522  T
Q  128 cttgttgaaaaatactaccatcaacacttgaaatagtctttactgcaccaaagacnnnnnnnattacccatgaagcttgtgcaggcacatcca 220  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||       |||||||||||||||||||||||||||||||    
T  3938523 cttgttgaaaaatactgccatcaacacttgaaatagtctttgctgcaccaaagactttttttattacccatgaagcttgtgcaggcacatcca 3938615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 27 - 220
Target Start/End: Complemental strand, 45066687 - 45066494
Alignment:
Q  27 tcattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattctcttaatagagaaatta 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45066687 tcattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattctcttaatagagaaatta 45066588  T
Q  127 gcttgttgaaaaatactaccatcaacacttgaaatagtctttactgcaccaaagacnnnnnnnattacccatgaagcttgtgcaggcacatcca 220  Q
    ||||||||||||||| | |||||||||||||||||||||||| |||||||||||||       ||||||||||||||||||||| |||||||||    
T  45066587 gcttgttgaaaaatatttccatcaacacttgaaatagtctttgctgcaccaaagactttttttattacccatgaagcttgtgcatgcacatcca 45066494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 161; Significance: 9e-86; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 27 - 220
Target Start/End: Original strand, 33623532 - 33623725
Alignment:
Q  27 tcattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattctcttaatagagaaatta 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33623532 tcattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattctcttaatagagaaatta 33623631  T
Q  127 gcttgttgaaaaatactaccatcaacacttgaaatagtctttactgcaccaaagacnnnnnnnattacccatgaagcttgtgcaggcacatcca 220  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||        |||||||||||||||||||||||||||||||    
T  33623632 gcttgttgaaaaatactgccatcaacacttgaaatagtctttgctgcaccaaagattttttttattacccatgaagcttgtgcaggcacatcca 33623725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 28 - 220
Target Start/End: Original strand, 33631639 - 33631831
Alignment:
Q  28 cattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattctcttaatagagaaattag 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33631639 cattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattctcttaatagagaaattag 33631738  T
Q  128 cttgttgaaaaatactaccatcaacacttgaaatagtctttactgcaccaaagacnnnnnnnattacccatgaagcttgtgcaggcacatcca 220  Q
    |||||||||||||||  |||||||||||||||||||||||| |||||||||||||       |||||||||||||||||||||||||||||||    
T  33631739 cttgttgaaaaatacagccatcaacacttgaaatagtctttgctgcaccaaagactttttttattacccatgaagcttgtgcaggcacatcca 33631831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 28 - 220
Target Start/End: Original strand, 18261557 - 18261749
Alignment:
Q  28 cattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattctcttaatagagaaattag 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18261557 cattttggaggggctggattattacatatcattttcctccaaccaacctttgtaaagtcacctcttaaagcattatacattctcttaatagagaaattag 18261656  T
Q  128 cttgttgaaaaatactaccatcaacacttgaaatagtctttactgcaccaaagacnnnnnnnattacccatgaagcttgtgcaggcacatcca 220  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||       ||||||||||||||||||| |||||||||||    
T  18261657 cttgttgaaaaatactgccatcaacacttgaaatagtctttgctgcaccaaagactttttttattacccatgaagcttgtgtaggcacatcca 18261749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 29456740 - 29456828
Alignment:
Q  31 tttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattctcttaataga 119  Q
    |||||||| ||  ||||||||||| |||||||||||||| ||||||| ||||| |||||||||||  ||||||||||||||||||||||    
T  29456740 tttggaggagcaagattattacatgtcattttcctccaagcaaccttggcaaaatcacctcttaagtcattatacattctcttaataga 29456828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 7478356 - 7478413
Alignment:
Q  80 caaagtcacctcttaaagcattatacattctcttaatagagaaattagcttgttgaaa 137  Q
    |||| ||||||||||||||||||||||||| |||||||| ||| ||||||||||||||    
T  7478356 caaaatcacctcttaaagcattatacattcgcttaatagcgaagttagcttgttgaaa 7478413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 155; Significance: 4e-82; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 28 - 211
Target Start/End: Complemental strand, 22163809 - 22163626
Alignment:
Q  28 cattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattctcttaatagagaaattag 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22163809 cattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattctcttaatagagaaattag 22163710  T
Q  128 cttgttgaaaaatactaccatcaacacttgaaatagtctttactgcaccaaagacnnnnnnnattacccatgaagcttgtgcag 211  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||       ||||||||||||||||||||||    
T  22163709 cttgttgaaaaatactgccatcaacacttgaaatagtctttgctgcaccaaagactttttttattacccatgaagcttgtgcag 22163626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 28 - 220
Target Start/End: Original strand, 3423468 - 3423656
Alignment:
Q  28 cattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattctcttaatagagaaattag 127  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  3423468 cattttggaggggctggattatta----tcattttcctccaaccaacctttgcaaagtcacctcttaaagtattatacattctcctaatagagaaattag 3423563  T
Q  128 cttgttgaaaaatactaccatcaacacttgaaatagtctttactgcaccaaagacnnnnnnnattacccatgaagcttgtgcaggcacatcca 220  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||       |||||||||||||||||||||||||||||||    
T  3423564 cttgttgaaaaatactgccatcaacacttgaaatagtctttgctgcaccaaagactttttttattacccatgaagcttgtgcaggcacatcca 3423656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 30280774 - 30280849
Alignment:
Q  145 ccatcaacacttgaaatagtctttactgcaccaaagacnnnnnnnattacccatgaagcttgtgcaggcacatcca 220  Q
    |||||||||||||||||||||||| |||||||||||||       |||||||||||||||||||||||||||||||    
T  30280774 ccatcaacacttgaaatagtctttgctgcaccaaagactttttttattacccatgaagcttgtgcaggcacatcca 30280849  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 43191696 - 43191734
Alignment:
Q  28 cattttggaggggctggattattacatatcattttcctc 66  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  43191696 catttaggagggtctggattattacatatcattttcctc 43191734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 28 - 220
Target Start/End: Complemental strand, 17556 - 17364
Alignment:
Q  28 cattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattctcttaatagagaaattag 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17556 cattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattcttttaatagagaaattag 17457  T
Q  128 cttgttgaaaaatactaccatcaacacttgaaatagtctttactgcaccaaagacnnnnnnnattacccatgaagcttgtgcaggcacatcca 220  Q
    |||||||||||||||| ||||||||||||||||||||||||  ||||||||||||       |||||||||| ||||||||||| ||||||||    
T  17456 cttgttgaaaaatactgccatcaacacttgaaatagtctttgttgcaccaaagactttttttattacccatggagcttgtgcagacacatcca 17364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 3e-73; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 28 - 220
Target Start/End: Complemental strand, 7279992 - 7279800
Alignment:
Q  28 cattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattctcttaatagagaaattag 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  7279992 cattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcaccgcttatagcattatacattctcttaatagagaaattag 7279893  T
Q  128 cttgttgaaaaatactaccatcaacacttgaaatagtctttactgcaccaaagacnnnnnnnattacccatgaagcttgtgcaggcacatcca 220  Q
    |||||||||||| |||| ||| ||||||||||||| ||||| |||||||||||||       |||||||||||||||||| ||||||||||||    
T  7279892 cttgttgaaaaacactaacattaacacttgaaataatctttgctgcaccaaagactttttttattacccatgaagcttgtccaggcacatcca 7279800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 51 - 220
Target Start/End: Original strand, 41099841 - 41100010
Alignment:
Q  51 acatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattctcttaatagagaaattagcttgttgaaaaatactaccatca 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||    
T  41099841 acatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattctcttaatagataaattagcttgttgaaaactactgccatca 41099940  T
Q  151 acacttgaaatagtctttactgcaccaaagacnnnnnnnattacccatgaagcttgtgcaggcacatcca 220  Q
    |||||||||||||||||| |||||||||||||       |||||||||||||||||||||||||||||||    
T  41099941 acacttgaaatagtctttgctgcaccaaagactttttttattacccatgaagcttgtgcaggcacatcca 41100010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 28 - 220
Target Start/End: Original strand, 39045417 - 39045604
Alignment:
Q  28 cattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattctcttaatagagaaattag 127  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||  ||||||| |||||    |||||||| ||||||||||||     
T  39045417 cattttggaggggcttgattattacatatcattttcccccaaccaacctttgcaaactctactcttaatgcatt----attctcttgatagagaaattaa 39045512  T
Q  128 cttgttgaaaaatactaccatcaacacttgaaatagtctttactgcaccaaagacnnnnnnnattacccatgaagcttgtgcaggcacatcca 220  Q
    |||||||| | | |||  ||| |||| ||||||| |||||| |||||||||||||       | ||| ||||||||||||||| |||||||||    
T  39045513 cttgttgatacacactgtcattaacaattgaaatggtctttgctgcaccaaagacttttcttactactcatgaagcttgtgca-gcacatcca 39045604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 88 - 179
Target Start/End: Original strand, 41701443 - 41701534
Alignment:
Q  88 cctcttaaagcattatacattctcttaatagagaaattagcttgttgaaaaatactaccatcaacacttgaaatagtctttactgcaccaaa 179  Q
    ||||||||  ||||||||||||| |||||||||||||||||| ||||||| | |||||||| |||||||||||||||||||  |||||||||    
T  41701443 cctcttaatacattatacattctattaatagagaaattagctcgttgaaatacactaccattaacacttgaaatagtctttgatgcaccaaa 41701534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 39790297 - 39790391
Alignment:
Q  28 cattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattctcttaatagagaa 122  Q
    ||||||||||| || || |||||| || ||||||||||||||| |||||| | ||| |||||||||||| | |||||||| | ||||| ||||||    
T  39790297 cattttggaggagcagggttattatatgtcattttcctccaactaaccttagaaaaatcacctcttaaatcgttatacatacgcttaagagagaa 39790391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 13941261 - 13941198
Alignment:
Q  56 tcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattctcttaataga 119  Q
    ||||||||||||||||||| |||| ||| || ||||| || ||||| |||||| ||||||||||    
T  13941261 tcattttcctccaaccaacttttgtaaaatctcctctcaaggcattgtacattttcttaataga 13941198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 56
Target Start/End: Original strand, 41093519 - 41093547
Alignment:
Q  28 cattttggaggggctggattattacatat 56  Q
    |||||||||||||||||||||||||||||    
T  41093519 cattttggaggggctggattattacatat 41093547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 267 - 400
Target Start/End: Original strand, 41071155 - 41071288
Alignment:
Q  267 acaattttggcggagtcaatttataaaccaaataagttaaattatatataacttaaagttcaactattttaatttatgaatcaaattcaacgaaaatata 366  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  41071155 acaattttgacggagtcaatttataaatcaaataagttaaattatatataacttaaagttcaactattttgattcatgaatcaaattcaacgaaaatata 41071254  T
Q  367 tttaaattgacatggacacgctgttaattgttgc 400  Q
    ||||||||||||| ||||||||||| ||||||||    
T  41071255 tttaaattgacatagacacgctgttcattgttgc 41071288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 6839574 - 6839481
Alignment:
Q  29 attttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattctcttaatagagaa 122  Q
    |||||||||| ||  | ||||||||| ||| ||||||||||| |||||| | ||| |||||||||||| | |||||||| | ||||| ||||||    
T  6839574 attttggaggagcatggttattacatgtcaatttcctccaactaaccttgggaaaatcacctcttaaatcgttatacatacgcttaagagagaa 6839481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 11814993 - 11814941
Alignment:
Q  55 atcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacat 107  Q
    |||||||||||||||| | | |||||||| |||||||||||  ||||||||||    
T  11814993 atcattttcctccaactagcttttgcaaaatcacctcttaagacattatacat 11814941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 41071107 - 41071142
Alignment:
Q  220 aattgatattaatattaaattttgtatataattacta 256  Q
    ||||||||||||||||||| |||||||||||||||||    
T  41071107 aattgatattaatattaaa-tttgtatataattacta 41071142  T

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Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 1161326 - 1161217
Alignment:
Q  28 cattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattctcttaatagagaaattag 127  Q
    |||||||||||||| || ||||||||| |||||||| |||| |  || ||  |||| ||||||||||||||||||||||||| |||||||| ||| ||||    
T  1161326 cattttggaggggcagggttattacatgtcattttcatccagctcactttgacaaaatcacctcttaaagcattatacattcgcttaatagcgaagttag 1161227  T
Q  128 cttgttgaaa 137  Q
    ||||||||||    
T  1161226 cttgttgaaa 1161217  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 35164516 - 35164596
Alignment:
Q  28 cattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacatt 108  Q
    ||||| |||| ||||| ||||||||||||||||||||||||||||||||| |||||  | |||||||| ||||||||||||    
T  35164516 catttcggagaggctgaattattacatatcattttcctccaaccaaccttagcaaaccctcctcttaatgcattatacatt 35164596  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 24318722 - 24318830
Alignment:
Q  31 tttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattctcttaatagagaaattagctt 130  Q
    ||||||||  |||| ||||| || |||||||| || |||| ||||||| |||| |||||||||||  ||||||||||| |||| ||||| || || | ||    
T  24318722 tttggaggaactgggttattgcaaatcatttttcttcaactaacctttacaaaatcacctcttaagacattatacattttcttgatagaaaagtttgatt 24318821  T
Q  131 gttgaaaaa 139  Q
    |||||||||    
T  24318822 gttgaaaaa 24318830  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 49821384 - 49821282
Alignment:
Q  31 tttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattctcttaatagagaaattagctt 130  Q
    |||||||||||| ||||| ||| |||||    |||||||||||| ||| |||| || ||||||||  |||||||||||||||||||||| | ||||||||    
T  49821384 tttggaggggctagattactacgtatca----cctccaaccaacttttacaaattctcctcttaatacattatacattctcttaatagatatattagctt 49821289  T
Q  131 gttgaaa 137  Q
    |||||||    
T  49821288 gttgaaa 49821282  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 50716124 - 50716200
Alignment:
Q  46 ttattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattctcttaatagagaa 122  Q
    ||||||||| |||||||||||| || |||||   |||| |||||| ||||| ||||||| |||| |||||| |||||    
T  50716124 ttattacatgtcattttcctccgactaacctcgacaaaatcacctgttaaatcattataaattcacttaattgagaa 50716200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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