View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0811_low_22 (Length: 392)
Name: NF0811_low_22
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0811_low_22 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 30 - 381
Target Start/End: Complemental strand, 4282115 - 4281768
Alignment:
| Q |
30 |
gtatctttagttatttaattcttgttaaaatccataacagtaagaaccgtgctattacttgtttctaacttctatttcccatcatatggatatattcata |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
4282115 |
gtatctttagttatttaattcttgttaaaatccataagagtaagaaccgtgctattacttgtttctaacttctatttcccaacatatggatatagtcata |
4282016 |
T |
|
| Q |
130 |
ttagactttcttatccctctattggagtgaaattcttaattgacaaacatagtgttctctggcagttatttgactatatgcatatacagatgctttcgta |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4282015 |
ttagactttcttatccctctattggagtgaaattcttaattgacaaacatagtgttctctggcatttatttgactatatgcatatacagatgctttcgta |
4281916 |
T |
|
| Q |
230 |
atttattcatcgcatgcttgggttttttaattgcacatatatgtgtcataaagtttaagttacgctactggtttttaactcactcaactaaagcaagatt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4281915 |
atttattcatcgcatgcttgggttttttaattgcac----atgtgtcataaagtttaagttacgctactagtttttaactcactcaactaaagcaagatt |
4281820 |
T |
|
| Q |
330 |
attatttacgtgatatacaatgcccaatatttaatctactactagttttcat |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4281819 |
attatttacgtgatatacaatgcccaatatttaatctactactagttttcat |
4281768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 33 - 381
Target Start/End: Original strand, 31709747 - 31710095
Alignment:
| Q |
33 |
tctttagttatttaattcttgttaaaatccataacagtaagaaccgtgctattacttgtttctaacttctatttcccatcatatggatat------attc |
126 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
31709747 |
tctttagttatttgattcttgttaaaatccataacagtaagaaccgtgctattacttgtttctaacttctatttcccaacatatggatattgccgtattc |
31709846 |
T |
|
| Q |
127 |
atattagactttcttatccctctattggagtgaaattcttaattgacaaacatagtgttctctggcagttatttgactatatgcatatacagatgctttc |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
31709847 |
atattagactttcttatccctctattggagtaaaattcttaattgacaaacattgtgttctctggcatttatttgactatgtgcatatacagatgctttc |
31709946 |
T |
|
| Q |
227 |
gtaatttattcatcgcatgcttgggttttttaattgcacatatatgtgtcataaagtttaagttacgctactggtttttaactcactcaactaaagcaag |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||| ||| ||||| ||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
31709947 |
gtaatttattcatcgcatgcttgggttttt-aactgcacatgtat----cataa-gtttaagttacgctattagtttttaactcactcaactaaagcaag |
31710040 |
T |
|
| Q |
327 |
attattatttacgtgatatacaatgcccaatatttaatctactactagttttcat |
381 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31710041 |
attattgtttacgtgatatacaatgcccaatatttaatctactactagttttcat |
31710095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 67 - 381
Target Start/End: Original strand, 18974020 - 18974336
Alignment:
| Q |
67 |
cagtaagaaccgtgctattacttgtttctaacttctatttcccatcatatggatat------attcatattagactttcttatccctctattggagtgaa |
160 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||| |||| ||| | |
|
|
| T |
18974020 |
cagtaagatccgtgctattacttgtttctaacttctatttcccaacatatggatattgccgtattcatattagactttcttgtccctcttttggggtgga |
18974119 |
T |
|
| Q |
161 |
attcttaattgacaaacatagtgttctctggcagttatttgactatatgcatatacagatgctttcgtaatttattcatcgcatgcttgggttttttaat |
260 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18974120 |
attcttaattgataaacatagtgttctctggcatttatttgactatatgcatatacagatgctttcgtaatttattcatcgcatgcttgggttttttaat |
18974219 |
T |
|
| Q |
261 |
tgcacatatatgtgtcataaagtttaagttacgctactggtttttaactcactcaactaaagcaagattattatttacgtgatatacaatgcccaatatt |
360 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18974220 |
tgcac----atgtgtcataaagtttaagttacgctactagtttttaactcgctcaactaaagcaagattattatttacgtgatatacaatgcccaatatt |
18974315 |
T |
|
| Q |
361 |
taatctactactagttttcat |
381 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
18974316 |
taatctaatactagttttcat |
18974336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 33 - 204
Target Start/End: Original strand, 14674095 - 14674272
Alignment:
| Q |
33 |
tctttagttatttaattcttgttaaaatccataacagtaagaaccgtgctattacttgtttctaacttctatttcccatcatatggata------tattc |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
14674095 |
tctttagttatttaattcttgttaaaatccataacagtaagaaccgtgctattacttgtttctaacttctatttcccaacatatggatactgccgtattc |
14674194 |
T |
|
| Q |
127 |
atattagactttcttatccctctattggagtgaaattcttaattgacaaacatagtgttctctggcagttatttgact |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14674195 |
atattagactttcttatccctctattggagtaaaattcttaattgacaaacatagtgttctctggcatttatttgact |
14674272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 211 - 381
Target Start/End: Original strand, 14674323 - 14674489
Alignment:
| Q |
211 |
atatacagatgctttcgtaatttattcatcgcatgcttgggttttttaattgcacatatatgtgtcataaagttt-aagttacgctactggtttttaact |
309 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| || ||||||| ||||||| |||||| || |||| ||||| |||||||||| |
|
|
| T |
14674323 |
atatacagatgctttcgtaaattattcatcgcatgcttgggttttt-aactgcacat----gtgtcattaagttttaacttacactactagtttttaact |
14674417 |
T |
|
| Q |
310 |
cactcaactaaagcaagattattatttacgtgatatacaatgcccaatatttaatctactactagttttcat |
381 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14674418 |
cactcaactaaagcgagattattgtttacgtgatacgtaatgcccaatatttaatctactactagttttcat |
14674489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 18973908 - 18973964
Alignment:
| Q |
30 |
gtatctttagttatttaattcttgttaaaatccataacagtaagaaccgtgctatta |
86 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18973908 |
gtatctttagttatttaatccttgttacaatccataacagtaagaaccgtgctatta |
18973964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 67 - 381
Target Start/End: Complemental strand, 19807683 - 19807367
Alignment:
| Q |
67 |
cagtaagaaccgtgctattacttgtttctaacttctatttcccatcatatggatat------attcatattagactttcttatccctctattggagtgaa |
160 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||| |||||||||||| ||||| |
|
|
| T |
19807683 |
cagtaagatccgtgctattacttgtttctaacttctatttcccaacatatggatattgccgtattcattttagactttcttgtccctctattggggtgaa |
19807584 |
T |
|
| Q |
161 |
attcttaattgacaaacatagtgttctctggcagttatttgactatatgcatatacagatgctttcgtaatttattcatcgcatgcttgggttttttaat |
260 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19807583 |
attcttaattgataaacatagtgttctctggcatttatttgactatatgcatatacagatgctttcgtaatttattcatcgcatgcttgggttttttaat |
19807484 |
T |
|
| Q |
261 |
tgcacatatatgtgtcataaagtttaagttacgctactggtttttaactcactcaactaaagcaagattattatttacgtgatatacaatgcccaatatt |
360 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19807483 |
tgcac----atgtgtcataaagtttaagttacgctactagtttttaactcgctcaactaaagcaagattattatttacttgatatacaatgcccaatatt |
19807388 |
T |
|
| Q |
361 |
taatctactactagttttcat |
381 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
19807387 |
taatctaatactagttttcat |
19807367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 33 - 248
Target Start/End: Complemental strand, 12208385 - 12208164
Alignment:
| Q |
33 |
tctttagttatttaattcttgttaaaatccataacagtaagaaccgtgctattacttgtttctaacttctatttcccatcatatggatat------attc |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
12208385 |
tctttagttatttaattcttgttaaaatccataacagtaagaaccgtgctattacttgtttctaacttctatttcccaacatatggatattgccgtattc |
12208286 |
T |
|
| Q |
127 |
atattagactttcttatccctctattggagtgaaattcttaattgacaaacatagtgttctctggcagttatttgactatatgcatatacagatgctttc |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
12208285 |
atattagactttcttatccctctatttgagtaaaattcttaattgacaaacatagtgttctctggcatttatttgactatgtgcatatacagatgctttc |
12208186 |
T |
|
| Q |
227 |
gtaatttattcatcgcatgctt |
248 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
12208185 |
gtaatttattcatcgcatgctt |
12208164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 19807795 - 19807739
Alignment:
| Q |
30 |
gtatctttagttatttaattcttgttaaaatccataacagtaagaaccgtgctatta |
86 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19807795 |
gtatctttagttatttaatccttgttacaatccataacagtaagaaccgtgctatta |
19807739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 67 - 381
Target Start/End: Complemental strand, 5331854 - 5331538
Alignment:
| Q |
67 |
cagtaagaaccgtgctattacttgtttctaacttctatttcccatcatatggatat------attcatattagactttcttatccctctattggagtgaa |
160 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||| ||||||| |||| ||||| |
|
|
| T |
5331854 |
cagtaagatccgtgctattacttgtttctaacttctatttcccaacatatgcatattgccgtattcatattagactttcttgtccctcttttggggtgaa |
5331755 |
T |
|
| Q |
161 |
attcttaattgacaaacatagtgttctctggcagttatttgactatatgcatatacagatgctttcgtaatttattcatcgcatgcttgggttttttaat |
260 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5331754 |
attcttaattgataaacatagtgttctctggcatttatttgactatatgcatatacagatgctttcgtaatttattcatcgcatgcttgggttttttaat |
5331655 |
T |
|
| Q |
261 |
tgcacatatatgtgtcataaagtttaagttacgctactggtttttaactcactcaactaaagcaagattattatttacgtgatatacaatgcccaatatt |
360 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5331654 |
tgcac----atgtgtcataaagtttaagttacgctactagtttttaactcgctcaactaaagcaagattattatttacgtgatatacaatgccccatatt |
5331559 |
T |
|
| Q |
361 |
taatctactactagttttcat |
381 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
5331558 |
taatctaatactagttttcat |
5331538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 5331966 - 5331910
Alignment:
| Q |
30 |
gtatctttagttatttaattcttgttaaaatccataacagtaagaaccgtgctatta |
86 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5331966 |
gtatctttagttatttaatccttgttacaatccataacagtaagaaccgtgctatta |
5331910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5564 times since January 2019
Visitors: 5757