View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0811_low_24 (Length: 368)
Name: NF0811_low_24
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0811_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 17669433 - 17669288
Alignment:
| Q |
21 |
acatcatcacatgacattattcgaagaaatcaaaaacagacatatttgcaaattaaaaagctgaattcgttacttttcaagtaaatatcattgcaacgaa |
120 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
17669433 |
acatcatcacatgacattattcgaagaaatcaaaaccagacatatttgcaaattaaaaagctgaattcattacttttcaagtaaatatcattgcaacgaa |
17669334 |
T |
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| Q |
121 |
aagttgaagtctcaatatgcttaaaacctagatcgcaatttgcact |
166 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17669333 |
aagttgaagtctcaatatgcttaaaacctagatcgcaatttgcact |
17669288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 206 - 339
Target Start/End: Original strand, 14674852 - 14674985
Alignment:
| Q |
206 |
accatattcttcttctattcaatcttgacaataatcctttcatgagtttccttgtcgtccatcttcgtcttaggcacaacaatctcgagcacaccatctt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14674852 |
accatattcttcttctattcaatcttgacaataatcctttcatgagtttccttgtcgtccatcttcgtcttaggcacaacaatctcgagcacaccatctt |
14674951 |
T |
|
| Q |
306 |
ttcttatcttagctttaatctcattaatcctgta |
339 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
14674952 |
ttcttatcttagctttaatctcattaatcctgta |
14674985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 14674667 - 14674812
Alignment:
| Q |
21 |
acatcatcacatgacattattcgaagaaatcaaaaacagacatatttgcaaattaaaaagctgaattcgttacttttcaagtaaatatcattgcaacgaa |
120 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14674667 |
acatcatcaaatgacattattcgaagaaatcaaaaccagacgtatttgcaaattaaaaagctgaattcattacttttcaagtaaatatcattgcaacgaa |
14674766 |
T |
|
| Q |
121 |
aagttgaagtctcaatatgcttaaaacctagatcgcaatttgcact |
166 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14674767 |
aagttgaagtctcaatatgcttaaaacctagatcgcaatttgcact |
14674812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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