View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0811_low_26 (Length: 311)
Name: NF0811_low_26
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0811_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 34 - 282
Target Start/End: Original strand, 36402681 - 36402929
Alignment:
| Q |
34 |
cacttacctcaacttttttcatccatgaagtagctttctgaacctgttcactctcccagccattgatgacagcatcatctctcttgaacctgttattaat |
133 |
Q |
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| T |
36402681 |
cacttacctcaacttttttcatccatgaagtagctttctgaacctgttcactctcccagccattgatgacagcatcatctctcttgaacctgttattaat |
36402780 |
T |
|
| Q |
134 |
cttagcaactttagcattctgccaagctgatatctttgcatcaacttcctccttcttcaccctatccaccgacacatgttcttcactaccaccttgacca |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36402781 |
cttagcaactttagcattctgccaagctgatatctttgcatcaacttcctccttcttcaccctatccaccgacacatgttcttcactaccaccttgacca |
36402880 |
T |
|
| Q |
234 |
cttgcacgtgcacttccaccagccatatttcttctgctagtaggagatg |
282 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
36402881 |
cttgcacgtgaacttccactagccatatttcttctgctagtaggagatg |
36402929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 196
Target Start/End: Original strand, 21428795 - 21428953
Alignment:
| Q |
38 |
tacctcaacttttttcatccatgaagtagctttctgaacctgttcactctcccagccattgatgacagcatcatctctcttgaacctgttattaatctta |
137 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||| ||| ||||||| |||||||| |||||||| || || || ||||||||||||| |||| |
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| T |
21428795 |
tacctcaactttcatcatccatgaattagctttctgaacctgctcattctcccaaccattgataacagcatcttcccttttaaacctgttattaacctta |
21428894 |
T |
|
| Q |
138 |
gcaactttagcattctgccaagctgatatctttgcatcaacttcctccttcttcaccct |
196 |
Q |
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||||| ||||| || ||||| || | |||||| | ||||| || || ||||||||||| |
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| T |
21428895 |
gcaaccttagcgttttgccatgcagctatcttggactcaacctcttctttcttcaccct |
21428953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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