View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0811_low_3 (Length: 695)
Name: NF0811_low_3
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0811_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 29 - 660
Target Start/End: Original strand, 52238502 - 52239131
Alignment:
| Q |
29 |
aaaagtcatccagcataaaacttataccagtagttccttacattcttacaaaaaacattactttagaagatttaaaaaatgttgagagatgaatgtttat |
128 |
Q |
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| T |
52238502 |
aaaagtcatccagcataaaacttataccagtagttccttacattcttacaaaaaacattactttagaagatttaaaaaatgttgagagatgaatgtttat |
52238601 |
T |
|
| Q |
129 |
gaccaatttcaagcaagattctagaaattgcctatgaaagagacaaactttttgtaatgctaataaattgacccaaacatagtacctgtaaaatatcaaa |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52238602 |
gaccaatttcaagcaagattctagaaattgcctatgaaagagaca--ctttttgtaatgctaataaattgacccaaacatagtacctgcaaaatatcaaa |
52238699 |
T |
|
| Q |
229 |
aactttttctgcagtgtacttttggtctgaagtagcacccttttgctgcaacttatctggatgcagactgagtaaagctctttgataagatcttttaacc |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
52238700 |
aactttttctgcagtgtacttttggtctgaagtagcacccttttgctgcaacttatccggatgcagactgagtaaagctctttgataagatcttttaacc |
52238799 |
T |
|
| Q |
329 |
gcattcccttcaattatatcaacaagaggcacaggcttccagccacagtttggccaaagtacctttattcatgatggaagccattttaggacaattttgt |
428 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
52238800 |
gcgttcccttcaattatatcaacaagaggcacaggcttccagccacagtttggccaaagtacctttattcatgatggaagccattttagaacaattttgt |
52238899 |
T |
|
| Q |
429 |
acttggatggaaccaaggatctaaaaaccttaactgaatcaatggttttacggcataccaacatgctttattgttgttaacaggaaataaaatatggaat |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52238900 |
acttggatggaaccaaggatctaaaaaccttaactgaatcaatggttttacggcataccaacatgctttattgttgttaacaggaaataaaatatggaat |
52238999 |
T |
|
| Q |
529 |
tttcaatcaaatgggttaagaatagtaagtactagacgannnnnnnnnnnnnnnnntattcttacgtattgtaatgttgacaacagtgagcgtatatttc |
628 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52239000 |
tttcaatcaaatgggttaagaatagtaagtactagacgaacacacagacacacacatattcttacgtattgtaatgttgacaacagtgagcgtatatttc |
52239099 |
T |
|
| Q |
629 |
cttcctttcctttagaccattgttgtatcttc |
660 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
52239100 |
cttcctttcctttagaccattgttgtatcttc |
52239131 |
T |
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