View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0811_low_35 (Length: 278)

Name: NF0811_low_35
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0811_low_35
NF0811_low_35
[»] chr3 (15 HSPs)
chr3 (69-246)||(13830862-13831040)
chr3 (26-70)||(32651439-32651483)
chr3 (26-69)||(9557351-9557394)
chr3 (26-70)||(21960582-21960626)
chr3 (26-70)||(30311337-30311381)
chr3 (31-70)||(3427554-3427593)
chr3 (37-70)||(17765169-17765202)
chr3 (37-70)||(19066489-19066522)
chr3 (26-70)||(11642210-11642254)
chr3 (26-70)||(15048062-15048106)
chr3 (26-70)||(20501727-20501771)
chr3 (26-70)||(28703405-28703449)
chr3 (26-54)||(28928896-28928924)
chr3 (26-70)||(39253728-39253772)
chr3 (26-70)||(44743856-44743900)
[»] chr4 (13 HSPs)
chr4 (33-72)||(46545749-46545788)
chr4 (26-70)||(3743111-3743155)
chr4 (34-70)||(21375816-21375852)
chr4 (26-70)||(38869799-38869843)
chr4 (38-72)||(6895040-6895074)
chr4 (26-71)||(12821999-12822044)
chr4 (37-70)||(31759659-31759692)
chr4 (26-70)||(5450124-5450168)
chr4 (26-70)||(23377987-23378031)
chr4 (26-70)||(37109352-37109396)
chr4 (26-70)||(39509101-39509145)
chr4 (26-70)||(47044748-47044792)
chr4 (26-70)||(51250523-51250567)
[»] chr6 (3 HSPs)
chr6 (25-70)||(28363967-28364012)
chr6 (37-70)||(14199948-14199981)
chr6 (26-70)||(17169847-17169891)
[»] chr8 (8 HSPs)
chr8 (28-72)||(24675511-24675555)
chr8 (26-70)||(19703488-19703532)
chr8 (26-72)||(12281525-12281571)
chr8 (25-70)||(3305189-3305234)
chr8 (26-70)||(7140740-7140784)
chr8 (26-66)||(28636348-28636388)
chr8 (26-66)||(28644082-28644122)
chr8 (26-66)||(28653034-28653074)
[»] chr7 (12 HSPs)
chr7 (25-70)||(20952150-20952195)
chr7 (26-70)||(9608630-9608674)
chr7 (26-70)||(9836202-9836246)
chr7 (26-66)||(42262100-42262140)
chr7 (26-70)||(45709709-45709753)
chr7 (27-70)||(29916809-29916852)
chr7 (37-70)||(2962501-2962534)
chr7 (26-70)||(17041013-17041057)
chr7 (26-70)||(22760894-22760938)
chr7 (30-70)||(25242031-25242071)
chr7 (26-70)||(26459411-26459455)
chr7 (26-70)||(41519111-41519155)
[»] chr5 (7 HSPs)
chr5 (29-70)||(21086748-21086789)
chr5 (26-66)||(43230779-43230819)
chr5 (25-70)||(43442226-43442271)
chr5 (26-70)||(84855-84899)
chr5 (26-70)||(14495806-14495850)
chr5 (26-70)||(27596358-27596402)
chr5 (26-70)||(29075812-29075856)
[»] chr2 (12 HSPs)
chr2 (26-70)||(37480106-37480150)
chr2 (33-70)||(4060215-4060252)
chr2 (26-55)||(4438995-4439024)
chr2 (37-70)||(7799036-7799069)
chr2 (25-70)||(29503301-29503346)
chr2 (25-70)||(33962785-33962830)
chr2 (29-62)||(34041597-34041630)
chr2 (36-69)||(35916127-35916160)
chr2 (30-70)||(14500312-14500352)
chr2 (26-70)||(19244140-19244184)
chr2 (34-70)||(21939124-21939160)
chr2 (26-70)||(42327396-42327440)
[»] chr1 (12 HSPs)
chr1 (26-70)||(15786321-15786365)
chr1 (25-65)||(41508861-41508901)
chr1 (30-70)||(51814529-51814569)
chr1 (26-70)||(52336775-52336819)
chr1 (33-72)||(27567121-27567160)
chr1 (30-70)||(2799897-2799937)
chr1 (26-70)||(8177183-8177227)
chr1 (26-70)||(10526854-10526898)
chr1 (26-70)||(12587301-12587345)
chr1 (26-70)||(19528328-19528372)
chr1 (26-70)||(22049829-22049873)
chr1 (26-70)||(33700774-33700818)
[»] scaffold0291 (1 HSPs)
scaffold0291 (29-70)||(2471-2512)
[»] scaffold0004 (1 HSPs)
scaffold0004 (25-70)||(81565-81610)
[»] scaffold0299 (1 HSPs)
scaffold0299 (26-70)||(11559-11603)
[»] scaffold0194 (1 HSPs)
scaffold0194 (30-70)||(13047-13087)


Alignment Details
Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 69 - 246
Target Start/End: Original strand, 13830862 - 13831040
Alignment:
Q  69 ttttgaattgtaaagttcatatttttccttttatttatcatcttctcgtggg-aatagtgtttgggaggaatcttcttcgagttttggggtcgggttgtt 167  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| |||||||||||||||| ||| |||||||||||| || |||||    
T  13830862 ttttgaattgtaaagttcatatttttccttttatttatcatcttgtggtggggaataatgtttgggaggaatctacttggagttttggggttggattgtt 13830961  T
Q  168 gtgatcaattccaattttatatatgcctctctttaaaatgtcaaagggtgtctggagaaaatttggcaagggatggtgg 246  Q
    ||||| |||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||    
T  13830962 gtgattaattccgattttctatatgcctctctttaaaatgtcaaagggtgtgtggagaaaaattggcaaggggtggtgg 13831040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 32651483 - 32651439
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||    
T  32651483 ttgggacctgggagtgtgctcctcctcaagatctcagattcgatt 32651439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 9557351 - 9557394
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgat 69  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||    
T  9557351 ttgggatctgagagtgtgctcctcctcgagatctcaggttcgat 9557394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 21960582 - 21960626
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||| |||||||||||||||||||| || ||||||||||||||    
T  21960582 ttgggacctgagagtgtgctcctcctcgaggtctcagattcgatt 21960626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 30311337 - 30311381
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||| ||||||||||||||||||| |||||| |||||||    
T  30311337 ttgggatctgggagtgtgctcctcctcaaggtctcaggttcgatt 30311381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 3427593 - 3427554
Alignment:
Q  31 atctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    ||||| ||||||||||||||||||| ||||||||||||||    
T  3427593 atctgggagtgtgctcctcctcaaggtctcagattcgatt 3427554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 17765169 - 17765202
Alignment:
Q  37 gagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||||||||||||||||||| |||||||    
T  17765169 gagtgtgctcctcctcaagatctcaggttcgatt 17765202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 19066489 - 19066522
Alignment:
Q  37 gagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||||||||||||||||||| |||||||    
T  19066489 gagtgtgctcctcctcaagatctcaggttcgatt 19066522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 11642254 - 11642210
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    ||||||||||||| |||| ||||||||||| |||||| |||||||    
T  11642254 ttgggatctgagattgtgatcctcctcaaggtctcaggttcgatt 11642210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 15048106 - 15048062
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||| || |||||||||||||||| |||||| |||||||    
T  15048106 ttgggatctgggaatgtgctcctcctcaaggtctcaggttcgatt 15048062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 20501727 - 20501771
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||| ||||||||||||||||||| ||| |||||| |||||||    
T  20501727 ttgggacctgagagtgtgctcctccttaaggtctcaggttcgatt 20501771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 28703449 - 28703405
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||| ||||||||||||| ||||| |||||| |||||||    
T  28703449 ttgggatctgggagtgtgctcctcttcaaggtctcaggttcgatt 28703405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 28928924 - 28928896
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaa 54  Q
    |||||||||||||||||||||||||||||    
T  28928924 ttgggatctgagagtgtgctcctcctcaa 28928896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 39253728 - 39253772
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||| ||||||||||||| ||||| |||||| |||||||    
T  39253728 ttgggatctgggagtgtgctcctcttcaaggtctcaggttcgatt 39253772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 44743900 - 44743856
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||| |||||||||||||||| || |||||| |||||||    
T  44743900 ttgggatctgggagtgtgctcctcctcgaggtctcaggttcgatt 44743856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 46545749 - 46545788
Alignment:
Q  33 ctgagagtgtgctcctcctcaagatctcagattcgatttt 72  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46545749 ctgagagtgtgctcctcctcaagatctcagattcgatttt 46545788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 3743155 - 3743111
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    ||||||||| |||||||| ||||||||||||||| ||||||||||    
T  3743155 ttgggatctaagagtgtgttcctcctcaagatcttagattcgatt 3743111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 21375816 - 21375852
Alignment:
Q  34 tgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||||||||||||||| ||||||||||||||    
T  21375816 tgagagtgtgctcctcctcaagctctcagattcgatt 21375852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 38869799 - 38869843
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||| ||||||||||||||||||| |||||| |||||||    
T  38869799 ttgggatctgggagtgtgctcctcctcaaggtctcaggttcgatt 38869843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 6895074 - 6895040
Alignment:
Q  38 agtgtgctcctcctcaagatctcagattcgatttt 72  Q
    |||||||||||||||||||||||| ||||||||||    
T  6895074 agtgtgctcctcctcaagatctcaaattcgatttt 6895040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 12821999 - 12822044
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgattt 71  Q
    |||||||||| ||||||||||||  ||||| |||||||||||||||    
T  12821999 ttgggatctgggagtgtgctcctgttcaaggtctcagattcgattt 12822044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 31759692 - 31759659
Alignment:
Q  37 gagtgtgctcctcctcaagatctcagattcgatt 70  Q
    ||||||||||||||||||| ||||||||||||||    
T  31759692 gagtgtgctcctcctcaaggtctcagattcgatt 31759659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 5450124 - 5450168
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||| ||||| ||||||||||||||||||| | ||||||||||||    
T  5450124 ttggaatctgggagtgtgctcctcctcaaggtttcagattcgatt 5450168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 23377987 - 23378031
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||| ||| ||||||||||||||||||| |||||| |||||||    
T  23377987 ttgggacctgggagtgtgctcctcctcaaggtctcaggttcgatt 23378031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 37109396 - 37109352
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||| ||| ||||||||||||||||||| |||||| |||||||    
T  37109396 ttgggacctgggagtgtgctcctcctcaaggtctcaggttcgatt 37109352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 39509101 - 39509145
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||| |||||||||||||||| || |||||| |||||||    
T  39509101 ttgggatctgggagtgtgctcctcctcgaggtctcaggttcgatt 39509145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 47044748 - 47044792
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    ||||||||||||||| ||||||||||| || |||||| |||||||    
T  47044748 ttgggatctgagagtttgctcctcctcgaggtctcaggttcgatt 47044792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 51250567 - 51250523
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||| ||||||||||| |||||||||||||  |||||||    
T  51250567 ttgggatctgggagtgtgctccgcctcaagatctcaagttcgatt 51250523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 28363967 - 28364012
Alignment:
Q  25 tttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||    
T  28363967 tttgggatctgcgagtgtgctcctcctcaaggtctcagattcgatt 28364012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 14199981 - 14199948
Alignment:
Q  37 gagtgtgctcctcctcaagatctcagattcgatt 70  Q
    ||||||||||||||||||| ||||||||||||||    
T  14199981 gagtgtgctcctcctcaaggtctcagattcgatt 14199948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 17169847 - 17169891
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||  ||||||||||||| ||||||||||||| ||||||    
T  17169847 ttgggatcttggagtgtgctcctcatcaagatctcagactcgatt 17169891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 24675555 - 24675511
Alignment:
Q  28 gggatctgagagtgtgctcctcctcaagatctcagattcgatttt 72  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||    
T  24675555 gggatctgagagtgtgctccttctcaaggtctcagattcgatttt 24675511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 19703532 - 19703488
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||| ||||||||||||||||||||||| |||||| |||||||    
T  19703532 ttgggacctgagagtgtgctcctcctcaaggtctcaggttcgatt 19703488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 12281525 - 12281571
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatttt 72  Q
    |||||| |||||||||||| ||||||| || ||||||||||||||||    
T  12281525 ttgggacctgagagtgtgcccctcctcgaggtctcagattcgatttt 12281571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 3305234 - 3305189
Alignment:
Q  25 tttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    ||||||||||| ||| ||||||||||||||| ||||| ||||||||    
T  3305234 tttgggatctgggagcgtgctcctcctcaaggtctcaaattcgatt 3305189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 7140740 - 7140784
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||| | |||||||||||||| || ||||||||||||||    
T  7140740 ttgggatctgggtgtgtgctcctcctcgagctctcagattcgatt 7140784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 28636388 - 28636348
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattc 66  Q
    |||||||||| |||||| ||| |||||||||||||||||||    
T  28636388 ttgggatctgggagtgtactcttcctcaagatctcagattc 28636348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 28644122 - 28644082
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattc 66  Q
    |||||||||| |||||| ||| |||||||||||||||||||    
T  28644122 ttgggatctgggagtgtactcttcctcaagatctcagattc 28644082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 28653074 - 28653034
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattc 66  Q
    |||||||||| |||||| ||| |||||||||||||||||||    
T  28653074 ttgggatctgggagtgtactcttcctcaagatctcagattc 28653034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 20952195 - 20952150
Alignment:
Q  25 tttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    ||||||| ||| |||||||||||||||||| |||||||||||||||    
T  20952195 tttgggacctgggagtgtgctcctcctcaaaatctcagattcgatt 20952150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 9608674 - 9608630
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||| |||||| ||||||||||||||||||| |||||||    
T  9608674 ttgggatctgggagtgtcctcctcctcaagatctcaggttcgatt 9608630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 9836246 - 9836202
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||| |||||| ||||||||||||||||||| |||||||    
T  9836246 ttgggatctgggagtgtcctcctcctcaagatctcaggttcgatt 9836202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 42262140 - 42262100
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattc 66  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  42262140 ttgggatctgagagtgtgctcctcctaaaggtctcagattc 42262100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 45709753 - 45709709
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    ||||||||||||||||||||||||||| || |||||| |||||||    
T  45709753 ttgggatctgagagtgtgctcctcctcgaggtctcaggttcgatt 45709709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 29916852 - 29916809
Alignment:
Q  27 tgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||| |||||||||||||||||||| |||||| |||||||    
T  29916852 tgggatctaagagtgtgctcctcctcaaggtctcaggttcgatt 29916809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 2962501 - 2962534
Alignment:
Q  37 gagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||||||||||||||||||| |||||||    
T  2962501 gagtgtgctcctcctcaagatctcaggttcgatt 2962534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 17041057 - 17041013
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    ||||||||||  |||||||||||||||||| |||||| |||||||    
T  17041057 ttgggatctggaagtgtgctcctcctcaaggtctcaggttcgatt 17041013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 22760894 - 22760938
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||| ||| ||||||||||||||||||| |||||| |||||||    
T  22760894 ttgggacctgggagtgtgctcctcctcaaggtctcaggttcgatt 22760938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 25242031 - 25242071
Alignment:
Q  30 gatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    ||||||||||| ||||||||||| || ||||||||||||||    
T  25242031 gatctgagagtatgctcctcctcgaggtctcagattcgatt 25242071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 26459455 - 26459411
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||| ||| ||||||||||||||||||| |||||| |||||||    
T  26459455 ttgggacctgggagtgtgctcctcctcaaggtctcaggttcgatt 26459411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 41519155 - 41519111
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    ||||||| | ||||||||||||| |||||| ||||||||||||||    
T  41519155 ttgggatttaagagtgtgctccttctcaaggtctcagattcgatt 41519111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 21086748 - 21086789
Alignment:
Q  29 ggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||  |||||||||||||||||||||||||||||||||    
T  21086748 ggatctggcagtgtgctcctcctcaagatctcagattcgatt 21086789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 43230819 - 43230779
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattc 66  Q
    ||||| |||||||||||||||||||| ||||||||||||||    
T  43230819 ttgggttctgagagtgtgctcctccttaagatctcagattc 43230779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 43442226 - 43442271
Alignment:
Q  25 tttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||| |||||| ||||||||||||||||||| |||||| |||||||    
T  43442226 tttgagatctgggagtgtgctcctcctcaaggtctcaggttcgatt 43442271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 84855 - 84899
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||| ||||||||||||||||||| |||||  |||||||    
T  84855 ttgggatctgggagtgtgctcctcctcaaggtctcaagttcgatt 84899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 14495850 - 14495806
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||| |||||||||||||||| || ||||||||| ||||    
T  14495850 ttgggatctgggagtgtgctcctcctcgaggtctcagatttgatt 14495806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 27596358 - 27596402
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    ||||||||||||||||| ||||||||| || ||| ||||||||||    
T  27596358 ttgggatctgagagtgtcctcctcctcgaggtcttagattcgatt 27596402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 29075812 - 29075856
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||| |||||||||||||||| ||||||||  |||||||    
T  29075812 ttgggatctgggagtgtgctcctcctcgagatctcatgttcgatt 29075856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 37480106 - 37480150
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||| ||||||||||||||||||||||| |||||| |||||||    
T  37480106 ttgggacctgagagtgtgctcctcctcaaggtctcaggttcgatt 37480150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 4060252 - 4060215
Alignment:
Q  33 ctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  4060252 ctgagagtgtgcttctcctcaagatctcaggttcgatt 4060215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 4439024 - 4438995
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaag 55  Q
    ||||||||||||||||||||||||||||||    
T  4439024 ttgggatctgagagtgtgctcctcctcaag 4438995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 7799069 - 7799036
Alignment:
Q  37 gagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||||||||| |||||||||||||||||    
T  7799069 gagtgtgctcctcctcgagatctcagattcgatt 7799036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 29503301 - 29503346
Alignment:
Q  25 tttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    ||||||| ||| ||||||||||||||||||| |||||| |||||||    
T  29503301 tttgggacctgggagtgtgctcctcctcaaggtctcaggttcgatt 29503346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 33962830 - 33962785
Alignment:
Q  25 tttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    ||||||| ||| |||||||||||||||| ||||||| |||||||||    
T  33962830 tttgggaactgggagtgtgctcctcctcgagatctcggattcgatt 33962785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 34041630 - 34041597
Alignment:
Q  29 ggatctgagagtgtgctcctcctcaagatctcag 62  Q
    ||||||||||||||||||||||||||| ||||||    
T  34041630 ggatctgagagtgtgctcctcctcaaggtctcag 34041597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 69
Target Start/End: Original strand, 35916127 - 35916160
Alignment:
Q  36 agagtgtgctcctcctcaagatctcagattcgat 69  Q
    |||||||| |||||||||||||||||||||||||    
T  35916127 agagtgtgttcctcctcaagatctcagattcgat 35916160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 14500312 - 14500352
Alignment:
Q  30 gatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||| |||||||||||||||| || ||||||||||||||    
T  14500312 gatctgggagtgtgctcctcctctaggtctcagattcgatt 14500352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 19244140 - 19244184
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||| |||||||||||||||||| |||| |||||| |||||||    
T  19244140 ttgggacctgagagtgtgctcctccccaaggtctcaggttcgatt 19244184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 21939160 - 21939124
Alignment:
Q  34 tgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  21939160 tgagagtgtgctcctcctcgagatctcaggttcgatt 21939124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 42327440 - 42327396
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||| ||| ||||||||||||||||||| |||||| |||||||    
T  42327440 ttgggacctgggagtgtgctcctcctcaaggtctcaggttcgatt 42327396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 15786365 - 15786321
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||| ||||||||||||||||||| |||||| |||||||    
T  15786365 ttgggatctgggagtgtgctcctcctcaaggtctcaggttcgatt 15786321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 41508861 - 41508901
Alignment:
Q  25 tttgggatctgagagtgtgctcctcctcaagatctcagatt 65  Q
    ||||||||||| ||||||||||||||||||| |||||||||    
T  41508861 tttgggatctgggagtgtgctcctcctcaaggtctcagatt 41508901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 51814529 - 51814569
Alignment:
Q  30 gatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||||||||||||||||||| |||||| |||||||    
T  51814529 gatctgagagtgtgctcctcctcaaggtctcaggttcgatt 51814569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 52336819 - 52336775
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||| ||||||||||||||| |||||||||| |||||||    
T  52336819 ttgggatctgggagtgtgctcctccttaagatctcaggttcgatt 52336775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 27567160 - 27567121
Alignment:
Q  33 ctgagagtgtgctcctcctcaagatctcagattcgatttt 72  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  27567160 ctgagagtgtgctcctcttcaaggtctcagattcgatttt 27567121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 2799897 - 2799937
Alignment:
Q  30 gatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||| ||||||||||||||||||| |||||| |||||||    
T  2799897 gatctgggagtgtgctcctcctcaaggtctcaggttcgatt 2799937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 8177227 - 8177183
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||| ||||||||||||||||||| | |||| |||||||    
T  8177227 ttgggatctgggagtgtgctcctcctcaaggtttcaggttcgatt 8177183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 10526854 - 10526898
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||| ||| |||| |||||||||||||| ||||||||||||||    
T  10526854 ttgggacctgggagtttgctcctcctcaaggtctcagattcgatt 10526898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 12587301 - 12587345
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||| |||||||||||||||| || |||||| |||||||    
T  12587301 ttgggatctgtgagtgtgctcctcctcgaggtctcaggttcgatt 12587345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 19528372 - 19528328
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||  ||||||||||||||||||| |||||| |||||||    
T  19528372 ttgggatctatgagtgtgctcctcctcaaggtctcaggttcgatt 19528328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 22049873 - 22049829
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||||||||||||| ||||||||| | | ||||||||||    
T  22049873 ttgggatctgagagtgtgcttctcctcaaggtttgagattcgatt 22049829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 33700818 - 33700774
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||| ||||| ||||||||||||||||||| |||||| |||||||    
T  33700818 ttggaatctgggagtgtgctcctcctcaaggtctcaggttcgatt 33700774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 2512 - 2471
Alignment:
Q  29 ggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    ||||||| ||||||||||||||||||| |||||| |||||||    
T  2512 ggatctgggagtgtgctcctcctcaaggtctcaggttcgatt 2471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 81610 - 81565
Alignment:
Q  25 tttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    ||||| |||||  |||||||||||||||||| ||||||||||||||    
T  81610 tttggaatctggaagtgtgctcctcctcaaggtctcagattcgatt 81565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 11559 - 11603
Alignment:
Q  26 ttgggatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||||||| |||||||||||||||| || |||||| |||||||    
T  11559 ttgggatctgggagtgtgctcctcctcgaggtctcaggttcgatt 11603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 13087 - 13047
Alignment:
Q  30 gatctgagagtgtgctcctcctcaagatctcagattcgatt 70  Q
    |||||| ||||||||||||||||||| |||||| |||||||    
T  13087 gatctgggagtgtgctcctcctcaaggtctcaggttcgatt 13047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 6253 times since January 2019
Visitors: 5764