View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0811_low_41 (Length: 251)
Name: NF0811_low_41
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0811_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 39 - 232
Target Start/End: Original strand, 20610174 - 20610367
Alignment:
| Q |
39 |
agaatcatctaattctaatctataaaatttcctaccctattaatattaagctgaannnnnnnaacctttctatttgctgatctgttaaacttttcccctt |
138 |
Q |
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| T |
20610174 |
agaatcatctaattctaatctataaaatttcctaccctattaatatgtagctgaatttttttaacctttctatttgctgatctgttaaacttttcccctt |
20610273 |
T |
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| Q |
139 |
aaattgctagctttattgaattaacacattttaaacgattatttgttataaatgtaatgacaagctcactgtttccattttccaagacacacaa |
232 |
Q |
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| T |
20610274 |
aaaatgctagctttattaaattaacacattttaaacgattacttgttatgaatgtaatgacgtgctcactgtttccattttccaagacacacaa |
20610367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 28 - 232
Target Start/End: Original strand, 20602336 - 20602540
Alignment:
| Q |
28 |
tcagtaaaaatagaatcatctaattctaatctataaaatttcctaccctattaatattaagctgaannnnnnnaacctttctatttgctgatctgttaaa |
127 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||| | |||||||||||||| |||| || |
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| T |
20602336 |
tcagtaaaaatagaaccatctaattctaatctataaaatttcctacccgattaatatgtagctgaaattttttatcctttctatttgctt---tgtttaa |
20602432 |
T |
|
| Q |
128 |
cttttcccc-ttaaattgctagcttt--attgaattaacacattttaaacgattatttgttataaatgtaatgacaagctcactgtttccattttccaag |
224 |
Q |
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||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||| |||||||||||| |
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| T |
20602433 |
cttttcccccttaaattgctagctttttattgaattaacacattttaaacgattacttgttatgaatgtaatgacatgctcactgttcccattttccaag |
20602532 |
T |
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| Q |
225 |
acacacaa |
232 |
Q |
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|||||||| |
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| T |
20602533 |
acacacaa |
20602540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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