View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0811_low_42 (Length: 251)
Name: NF0811_low_42
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0811_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 14 - 183
Target Start/End: Complemental strand, 13585522 - 13585348
Alignment:
| Q |
14 |
atatatacaacataaactaaaaactattaatagggtagcgtttgaatttgatacctgtgaccacaaggagtggtacttggctcaaagaataactcaaaac |
113 |
Q |
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| T |
13585522 |
atatatacaacataaattaaaaactattaatagggttgcgtttgaatttgatacctgtgaccacaaggagtggtacttggctcaaagaataactcaaaac |
13585423 |
T |
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| Q |
114 |
acatctgcataat------aatacgtgaataaaacaaaaattagtatagtgtatcaaaaactatgaagcacggaca |
183 |
Q |
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| T |
13585422 |
acatctgcataataataataataagtgaataaaa-agaaatcagtataatgtatcaaaaactatgaagcacggaca |
13585348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 13579941 - 13579868
Alignment:
| Q |
53 |
gtttgaatttgatacctgtgaccacaaggagtggtacttggctcaaagaataactcaaaacacatctgcataat |
126 |
Q |
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| T |
13579941 |
gtttgaatttaatacctgtgaccacaaggagtggtacttggctcaaagcatatctctaaacaaatctgcgtaat |
13579868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 222 - 251
Target Start/End: Complemental strand, 13585280 - 13585251
Alignment:
| Q |
222 |
ggtgtccgtgcttcttagataaaaaacaaa |
251 |
Q |
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| T |
13585280 |
ggtgtccgtgcttcttagataaaaaacaaa |
13585251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 6632271 - 6632206
Alignment:
| Q |
58 |
aatttgatacctgtgaccacaaggagtggtacttggctcaaagaataactcaaaacacatctgcat |
123 |
Q |
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| T |
6632271 |
aatttaatacctgtgacaacaaggagtggtacttggctcaaagcatatctctaaacaaatctgcat |
6632206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 36893542 - 36893475
Alignment:
| Q |
58 |
aatttgatacctgtgaccacaaggagtggtacttggctcaaagaataactcaaaacacatctgcataa |
125 |
Q |
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| T |
36893542 |
aatttaatatctgtgacaacaaggggtggtacttggctcaaagcatatctctaaacaaatctgcataa |
36893475 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 32092142 - 32092075
Alignment:
| Q |
58 |
aatttgatacctgtgaccacaaggagtggtacttggctcaaagaataactcaaaacacatctgcataa |
125 |
Q |
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| T |
32092142 |
aatttaatacctgtgacaacaaggagtggtacttgactcaaagcatatctctaaacaaatctgcataa |
32092075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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