View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0811_low_46 (Length: 247)
Name: NF0811_low_46
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0811_low_46 |
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| [»] chr4 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 27 - 247
Target Start/End: Complemental strand, 53997939 - 53997719
Alignment:
| Q |
27 |
ataagttgttgtgttcgtaacgatgcaggtctatttgttttagcattaacctcttggacgcgaccggaactgtctccacatgagggtgaggcactggggt |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
53997939 |
ataagttgttgtgttcgtaacgatgcaggtctatttgtttcagcattaacctcttggacgcgaccggaactgtctccacatgagggtgaggcagtggggt |
53997840 |
T |
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| Q |
127 |
tgtagcatgctatgtcttgggctttgagtagcggcttccataatgtgatatttgaaacagactccaagatgcttgtggatgttgttcattcggataatgc |
226 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53997839 |
tgtggcatgctatgtcttgggctttgagtagcggcttccataatgtgatatttgaaacagactccaagatgcttgtggatgttgttcattcggataatgc |
53997740 |
T |
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| Q |
227 |
gggtatttctgaattttatgt |
247 |
Q |
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| T |
53997739 |
gggtatttctgaattttatgt |
53997719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 47490229 - 47490196
Alignment:
| Q |
214 |
attcggataatgcgggtatttctgaattttatgt |
247 |
Q |
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| T |
47490229 |
attcggataatgcgggtatttctaaattttatgt |
47490196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 27 - 247
Target Start/End: Complemental strand, 25700534 - 25700314
Alignment:
| Q |
27 |
ataagttgttgtgttcgtaacgatgcaggtctatttgttttagcattaacctcttggacgcgaccggaactgtctccacatgagggtgaggcactggggt |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
25700534 |
ataagttgttgtgttcgtaacgatgcaggtctatttgtttcagcattaacctcttggatgcgaccgaaactgtctccacatgagggtgaggcactggggt |
25700435 |
T |
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| Q |
127 |
tgtagcatgctatgtcttgggctttgagtagcggcttccataatgtgatatttgaaacagactccaagatgcttgtggatgttgttcattcggataatgc |
226 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25700434 |
tgtggcatgctatgtcttgggctttgagtagcggcttccataatgtgatatttgaaacagactccaagatgcttgtggatgttgttcattcggataatgc |
25700335 |
T |
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| Q |
227 |
gggtatttctgaattttatgt |
247 |
Q |
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|||||||||||||||||||| |
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| T |
25700334 |
aggtatttctgaattttatgt |
25700314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 31 - 247
Target Start/End: Original strand, 13088394 - 13088610
Alignment:
| Q |
31 |
gttgttgtgttcgtaacgatgcaggtctatttgttttagcattaacctcttggacgcgaccggaactgtctccacatgagggtgaggcactggggttgta |
130 |
Q |
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||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13088394 |
gttgttgtgttcgtaacaatgcaggtatatttgtttcagcattaacctcttggacgcgaccggaactgtctccacatgagggtgagacactggggttgtg |
13088493 |
T |
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| Q |
131 |
gcatgctatgtcttgggctttgagtagcggcttccataatgtgatatttgaaacagactccaagatgcttgtggatgttgttcattcggataatgcgggt |
230 |
Q |
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||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| ||| |
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| T |
13088494 |
gcaagctatgtcttgggcttttagtagcggcttccaaaatgtgatatttgaaacagactccaagatgcttgtggatgctgttcattcagatagtgcaggt |
13088593 |
T |
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| Q |
231 |
atttctgaattttatgt |
247 |
Q |
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||| || |||||||||| |
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| T |
13088594 |
attcctaaattttatgt |
13088610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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