View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0811_low_5 (Length: 634)
Name: NF0811_low_5
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0811_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 1 - 558
Target Start/End: Original strand, 33270723 - 33271285
Alignment:
| Q |
1 |
gctacaggtccaattgcaatttctcttgaactccccatcacagcatagataagaggaggaaccacacttgtgtctgaagaccaatcaaataaataattca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33270723 |
gctacaggtccaattgcaatttctcttgaactccccatcacagcatagataagaggaggaaccacacttgtgtctgaagaccaatgaaataaataattca |
33270822 |
T |
|
| Q |
101 |
tattagaaaatattcatactataaaaactcattgcattttatagtatagttgaaggtagtatattaatatagacaactaaagttagatacctacataagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33270823 |
tattagaaaatattcatactataaaaactcattgcattttatagtatagttgaaggtagtatattaatatagacaactaaagttagatacctacataagc |
33270922 |
T |
|
| Q |
201 |
catattgaggatcaagttttgctaaattagcataaccaatactctgcaacattagatnnnnnnnntcagtaa---tgtaataaaatatattatttatgca |
297 |
Q |
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| T |
33270923 |
catattgaggatcaagttttgctaaattagcataaccaatactctgcaacattagataaaaaaaatcagtaagaatgtaataaaatatattatttatgca |
33271022 |
T |
|
| Q |
298 |
tctgaaacattggtctaaaaataaaaagtaatatttgtgaatat--atacctgaggtatgcttaggctagcaagagttaaacctgctaggaaatcatctt |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33271023 |
tctgaaacattggtctaaaaataaaaagtaatatttgtgaatatatatacctgaggtatgcttaggctagcaagagttaaacctgctaggaaatcatctt |
33271122 |
T |
|
| Q |
396 |
taaacttgaaagcatcatagtttttgaacaagctaagtattggaaataatccactaaagaaagaaacaacatgttcatggcaagttcttttcttggatga |
495 |
Q |
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| T |
33271123 |
taaacttgaaagcatcatagtttttgaacaagctaagtattggaaataatccactaaagaaagaaacaacatgttcatggcaagttcttttcttggatga |
33271222 |
T |
|
| Q |
496 |
agaaaagagcttgttattcttaagtggagtaatgagttttttccatagaggaggtggatttgg |
558 |
Q |
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| T |
33271223 |
agaaaagagcttgttattcttaagtggagtaatgagttttttccatagaggaggtggatttgg |
33271285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 25707467 - 25707528
Alignment:
| Q |
1 |
gctacaggtccaattgcaatttctcttgaactccccatcacagcatagataagaggaggaac |
62 |
Q |
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|||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| |
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| T |
25707467 |
gctacaggtccaattgcaatgtctcttgagcttcccatcacagcatagataagaggaggaac |
25707528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 25707785 - 25707846
Alignment:
| Q |
192 |
tacataagccatattgaggatcaagttttgctaaattagcataaccaatactctgcaacatt |
253 |
Q |
| |
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|||| ||||||||||||||||||| |||||| ||| | |||||||| ||||||||||||||| |
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| T |
25707785 |
tacacaagccatattgaggatcaacttttgccaaacttgcataacctatactctgcaacatt |
25707846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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