View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0811_low_58 (Length: 203)
Name: NF0811_low_58
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0811_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 5e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 36640707 - 36640896
Alignment:
| Q |
1 |
accacaacagcatccgaatcagtcaggacagcagcaaactgacagatatacaaatagatttctctatttctgcaaaataaattttgaattgcaaactagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36640707 |
accacaacagcatccgaatcagtcaggacagcagcaaactgacagatatacaaatagatttctctatttctgcaaaataaattttgaattgcaaactagc |
36640806 |
T |
|
| Q |
101 |
aagcctcacacacttcaatcctcaggccgccaaattctctgcccctccatattcacgccacgttttgctaaagcatctgcaaatgagttcat |
192 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36640807 |
aagc--cacacacttcaatcctcaggccgccaaattctctgcccctccatattcacgccacgttttgctaaagcatctgcaaatgagttcat |
36640896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 36633339 - 36633530
Alignment:
| Q |
1 |
accacaacagcatccgaatcagtcaggacagcagcaaactgacagatatacaaatagatttctctatttctgcaaaataaattttgaattgcaaactagc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36633339 |
accacaacagcatccgaatcagtcaggacagcagcaaacagacagatatacaaatagatttctctatttctgtaaaataaattttgaattgcaaactagc |
36633438 |
T |
|
| Q |
101 |
aagcctcacacacttcaatcctcaggccgccaaattctctgcccctccatattcacgccacgttttgctaaagcatctgcaaatgagttcat |
192 |
Q |
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||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36633439 |
aagcctcacacactttaatccataggccaccaaattctctgcccctccatattcacgccactttttgctaaagcatctgcaaatgagttcat |
36633530 |
T |
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