View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0811_low_8 (Length: 569)
Name: NF0811_low_8
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0811_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 28 - 515
Target Start/End: Original strand, 34772308 - 34772795
Alignment:
| Q |
28 |
cagttgatgttgctaacgaagagagagccaaactgagagccgccgctgctactgctagtgcggctgaagcttcttcctccaataaaggaggtgaatagct |
127 |
Q |
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| T |
34772308 |
cagttgatgttgctaacgaagagagagccaaactgagagccgccgctgctactgctagtgcggctgaagcttcttcctccaataaaggaggtgaatagct |
34772407 |
T |
|
| Q |
128 |
aggtatgtttttatttgctcatgtcatttctgatttaatgaaaattataagatagaagatgatgctcacaagaattttaattccctcttgcttgctaatt |
227 |
Q |
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| T |
34772408 |
aggtatgtttttatttgctcatgtcatttctgatttaatgaaaattataagatagaagatgatgctcacaagaattttaattccctcttgcttgctaatt |
34772507 |
T |
|
| Q |
228 |
aaacaaaatgaaactaacatcgatgaaggtttaccctttcagaaatctattgtcgagttttttggattccaaaacttcgcaatcannnnnnnnctgtgta |
327 |
Q |
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| T |
34772508 |
aaacaaaatgaaactaacatcgatgaaagtttaccctttcagaaatctattgtcgagttttttggattccaaaacttcgcaatcattttttttctgtgta |
34772607 |
T |
|
| Q |
328 |
cagatttttagtatctgttatcggttgttagtcgcttgaggtggattttttggatttgggcgtgtgctgtttttgtggcctgttttggtagtcttaggta |
427 |
Q |
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| T |
34772608 |
cagatttttagtatctgttatcggttgttagtcgcttgaggtggattttttggatttgggcgtgtgctgtttttgtggcctgttttggtagtcttaggta |
34772707 |
T |
|
| Q |
428 |
tttcaggtttagggatcaatagcctcttaaaatgtttagtaaaaatttacatttgatttattttgctccctggtgtgctgctgccgag |
515 |
Q |
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| T |
34772708 |
tttgaggtttagggatcaatagcctcttaaaatgtttagtaaaaatttacatttgatttattttgctccctggtgtgctgctgccgag |
34772795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 416
Target Start/End: Original strand, 34797821 - 34797913
Alignment:
| Q |
325 |
gtacagatttttagtatctgttatcggttgttagtcgcttgaggt-ggattttttggatttgggcgtgtgctgtttttgtggcctgttttggt |
416 |
Q |
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||||||||||||||| ||||| ||| ||||| ||||||| ||||| || ||||||||||||| ||||| ||||||||||||||| ||||||| |
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| T |
34797821 |
gtacagatttttagtgtctgtaatctgttgtaagtcgctcgaggtgggtttttttggatttgagcgtggactgtttttgtggcctcttttggt |
34797913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 479
Target Start/End: Original strand, 34798472 - 34798544
Alignment:
| Q |
410 |
ttttggtagtcttaggt---atttcaggtttagggatcaatagcctcttaaaatgtttagtaaaaatttacat |
479 |
Q |
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||||||||||||||||| |||| |||||| |||||||||||||||||| || |||| | ||||||||||| |
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| T |
34798472 |
ttttggtagtcttaggtcttatttgaggtttggggatcaatagcctcttataaagttttttcaaaatttacat |
34798544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 9531815 - 9531778
Alignment:
| Q |
79 |
ctgctagtgcggctgaagcttcttcctccaataaagga |
116 |
Q |
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|||||||||||||| |||| |||||||||||||||||| |
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| T |
9531815 |
ctgctagtgcggcttaagcctcttcctccaataaagga |
9531778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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