View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_high_110 (Length: 271)
Name: NF0812_high_110
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_high_110 |
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| [»] scaffold0848 (1 HSPs) |
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Alignment Details
Target: scaffold0848 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0848
Description:
Target: scaffold0848; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 106 - 258
Target Start/End: Original strand, 3545 - 3699
Alignment:
| Q |
106 |
aggactgagtattttcctgttgttattcaaacataattgaattcaccacnnnnnnnnnn--gggtgagaatatggatgagcttgaaccggttttcgctga |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3545 |
aggactgagtattttcctgttgttattcaaacataattgaattcaccacaaaaaaaaaaaagggtgagaatatggatgagcttgaaccggttttcgctga |
3644 |
T |
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| Q |
204 |
tttgaagtatttggaggagtattcttcggctgggatggtgtgtttgttgcaacag |
258 |
Q |
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| T |
3645 |
tttgaagtatttggaggagtattctttggctgggatggtgtgtttgttgcaacag |
3699 |
T |
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Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 106 - 258
Target Start/End: Complemental strand, 47392338 - 47392184
Alignment:
| Q |
106 |
aggactgagtattttcctgttgttattcaaacataattgaattcaccacnnnnnnnnnn--gggtgagaatatggatgagcttgaaccggttttcgctga |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47392338 |
aggactgagtattttcctgttgttattcaaacataattgaattcaccacaaaaaaaaaaaagggtgagaatatggatgagcttgaaccggttttcgctga |
47392239 |
T |
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| Q |
204 |
tttgaagtatttggaggagtattcttcggctgggatggtgtgtttgttgcaacag |
258 |
Q |
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| T |
47392238 |
tttgaagtatttggaggagtattctttggctgggatggtgtgtttgttgcaacag |
47392184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 165 - 258
Target Start/End: Original strand, 40623827 - 40623920
Alignment:
| Q |
165 |
gggtgagaatatggatgagcttgaaccggttttcgctgatttgaagtatttggaggagtattcttcggctgggatggtgtgtttgttgcaacag |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40623827 |
gggtgagaatatggatgagcttgaaccggttttcgctgatttgaagcatttggaggagtattctttggctgggatggtgtgtttgttgcaacag |
40623920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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