View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_high_114 (Length: 266)
Name: NF0812_high_114
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_high_114 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 49 - 266
Target Start/End: Original strand, 43089317 - 43089534
Alignment:
| Q |
49 |
actcgttcctgttactctcattgtgattgtacctttcctgcaaaataaaaatcataagaaatgtaaatattcaagtgatactaggaattagaatatgaga |
148 |
Q |
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| T |
43089317 |
actcgttcctgttactctcattgtgattatacctttcctgcaaaataacaatcataagaaatgtaaatattcaagtgatactaggaattaaaatatgaga |
43089416 |
T |
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| Q |
149 |
tctgtttatgtattttaccgtggatcttctagcttgtgtttgaaatctgttatttgtttcattctttgtgtttatgatgagtccacgagatttatgagac |
248 |
Q |
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| T |
43089417 |
tctgtttatgtattttaccgtggatcttctagcttgtgtttgaaatctgttatttgtttcattctttgtgcttatgatgagtccacgagatttatgagac |
43089516 |
T |
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| Q |
249 |
cttactgttgcttgtgct |
266 |
Q |
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| T |
43089517 |
cttactgttgcttgtgct |
43089534 |
T |
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