View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_high_116 (Length: 265)
Name: NF0812_high_116
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_high_116 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 6313289 - 6313543
Alignment:
| Q |
11 |
cacagaagcccatttatttattttataatcaaggtggtggttcttgatctgtcttcatcaacttgaatgaatattttatctaacagtcggtttcacttca |
110 |
Q |
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| T |
6313289 |
cacaaaagcccatttatttattttataatcaaggtggtggttcttgatctgtcttcatcaacttgaatgaatattttatctaacagtcggtttcacttca |
6313388 |
T |
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| Q |
111 |
ctatctgactactatattctttatnnnnnnntgaactagccactagtatagtaccacgtgtaccacaacaacaatttaaggttccaaaaatctaaatctg |
210 |
Q |
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| T |
6313389 |
ctatctgactactatattctttatgggggggtgaactagccactagtatagtaccacgtgtaccacaacaacaatttaaggttccaaaaatctaaatctg |
6313488 |
T |
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| Q |
211 |
tctcttgtcacagaagtctaaccaatagccactgagctcacaaacacaatgccac |
265 |
Q |
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| T |
6313489 |
tctcttgtcacagaagtctaaccaatagccactgagctcacaaacacaatgccac |
6313543 |
T |
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