View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_high_118 (Length: 253)
Name: NF0812_high_118
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_high_118 |
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| [»] chr3 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 1624165 - 1624404
Alignment:
| Q |
14 |
gctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcataatattgtcat |
113 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1624165 |
gctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcataatattgtcat |
1624264 |
T |
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| Q |
114 |
tatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1624265 |
tatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagc |
1624364 |
T |
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| Q |
214 |
ttgcacagtcttgtactgaccagaaccatcttttgccacc |
253 |
Q |
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| T |
1624365 |
ttgcacagtcttgtactgaccagaaccatcttttgccacc |
1624404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 1630140 - 1630379
Alignment:
| Q |
14 |
gctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcataatattgtcat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630140 |
gctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcataatattgtcat |
1630239 |
T |
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| Q |
114 |
tatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagc |
213 |
Q |
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| T |
1630240 |
tatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagc |
1630339 |
T |
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| Q |
214 |
ttgcacagtcttgtactgaccagaaccatcttttgccacc |
253 |
Q |
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| T |
1630340 |
ttgcacagtcttgtactgtccagaaccatcttttgccacc |
1630379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 1607144 - 1607383
Alignment:
| Q |
14 |
gctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcataatattgtcat |
113 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1607144 |
gctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcataatattgtcat |
1607243 |
T |
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| Q |
114 |
tatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1607244 |
tatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagc |
1607343 |
T |
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| Q |
214 |
ttgcacagtcttgtactgaccagaaccatcttttgccacc |
253 |
Q |
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| T |
1607344 |
ctgcacagtcttgtactgtccagaaccatcttttgccacc |
1607383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 10820139 - 10819900
Alignment:
| Q |
14 |
gctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcataatattgtcat |
113 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||||| || |||| |
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| T |
10820139 |
gctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcaccgaccaacataatgttatcat |
10820040 |
T |
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| Q |
114 |
tatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagc |
213 |
Q |
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| T |
10820039 |
tatgaacagcaacctcaatgttctctttataaacacctttcttcacatgtatcacataccttgtcttgtattttctcttagcagcagcatttaaagcagc |
10819940 |
T |
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| Q |
214 |
ttgcacagtcttgtactgaccagaaccatcttttgccacc |
253 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |
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| T |
10819939 |
ttgcacagtcttgtactgtccagaaccatcttttgccacc |
10819900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 18785191 - 18785430
Alignment:
| Q |
14 |
gctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcataatattgtcat |
113 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||| |
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| T |
18785191 |
gctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccaacataatgttatcat |
18785290 |
T |
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| Q |
114 |
tatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagc |
213 |
Q |
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| ||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18785291 |
tgtgaaccgcaacctcaatgttctctttataaacacctttcttcacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttagagcagc |
18785390 |
T |
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| Q |
214 |
ttgcacagtcttgtactgaccagaaccatcttttgccacc |
253 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |
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| T |
18785391 |
ttgcacagtcttgtactgtccagaaccatcttttgccacc |
18785430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 216
Target Start/End: Original strand, 12803497 - 12803590
Alignment:
| Q |
123 |
caacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagcttg |
216 |
Q |
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||||| |||| ||||||||||||||||||||||| ||| |||| ||||| ||||| ||| | ||||| | |||||||||||| |||| |||| |
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| T |
12803497 |
caaccacaatattctctctataaacacctttcttcacacgtataacaaatcttgttttaaaccttctcctcccagcagcatttatagcatcttg |
12803590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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