View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_high_119 (Length: 252)
Name: NF0812_high_119
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_high_119 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 243
Target Start/End: Original strand, 14471140 - 14471375
Alignment:
| Q |
8 |
aatctgaagtgtaggtgttacatagcttagcattcaaaatttgctaaatggagataactctctggtttttaactagatattatatttaattaatatgaac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
14471140 |
aatctgaagtgtaggtgttacatagcttagcattcaaaatttgctaaatggaaataactctctggtttttaactagatattatattcaattaacatgaac |
14471239 |
T |
|
| Q |
108 |
aaacaatggagattttggccttaattatcatgttgcttgctgaaaagctcgtaaaattcagctgaagnnnnnnnngtagataatctgcccaaattacaaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14471240 |
aaacaatggagattttggccttaattatcatgttgcttgctgaaaagcttgtaaaattcagctgaagaaaaaaaggtagataatctgcccaaattacaaa |
14471339 |
T |
|
| Q |
208 |
tttttatcttttactattccctttttctgcctatga |
243 |
Q |
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|||||||||||||| ||||||||||||||||||||| |
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| T |
14471340 |
tttttatcttttaccattccctttttctgcctatga |
14471375 |
T |
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