View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0812_high_120 (Length: 252)
Name: NF0812_high_120
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_high_120 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 25737203 - 25737426
Alignment:
| Q |
1 |
tttgagaacattctagatgttttagagtgagttgttcatggtatggagaaggctttgtaattttgatttgattcattctaattcacnnnnnnncttaata |
100 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25737203 |
tttgagaatattctagaggttttagagtgagttgttcatggtttgaagaaggctttgtaattttgatttgattcattctaattcactttttttcttaata |
25737302 |
T |
|
| Q |
101 |
gacaaggtcataggtgttttgaatctcgtatgctactaatcatgtaattggaaaaagacagacacctcatagaagttatggaagctaaagagtcatctat |
200 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25737303 |
gacaaggtcatgggtgttttgaatctctgatgctacaaatcatgtaattgggaaaagacagacacctcatagaagttatggaagctaaagagtcatctat |
25737402 |
T |
|
| Q |
201 |
gattgatgctaacttgagataagt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
25737403 |
gattgatgctaacttgagataagt |
25737426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 37081799 - 37081848
Alignment:
| Q |
138 |
aatcatgtaattggaaaaagacagacacctcatagaagttatggaagcta |
187 |
Q |
| |
|
|||||||||||| || |||| ||||||||||| |||||||||||||||| |
|
|
| T |
37081799 |
aatcatgtaattcgacaaagcaagacacctcatggaagttatggaagcta |
37081848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5953 times since January 2019
Visitors: 5761