View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_high_122 (Length: 251)
Name: NF0812_high_122
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_high_122 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 40466328 - 40466570
Alignment:
| Q |
9 |
gaataatattaagaggaagaatgatagtcaaacaccaagtatgaatcaagacattgaaaatagtttggtgctgaatgacaggtaattaccacttttattt |
108 |
Q |
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| T |
40466328 |
gaataatattaagaggaagaatgatagtcaaacaccaagtatgaatcaagacaatgaaaatagtttggtgctgaatgacaggtaattaccactttttttt |
40466427 |
T |
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| Q |
109 |
atttatgagatattctttttatattctaggattctctttatagttctcatgctactgtttgggttagtgacaaataaataatattatttccttcctaatg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40466428 |
atttatgagatattctttttatattctaggattctcattatagttctcatgctactgtttgggttagtgacaaataaataatattatttccttcctaatt |
40466527 |
T |
|
| Q |
209 |
ttcaactttctttgcccttttgagtttgcagttcacattgtga |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40466528 |
ttcaactttctttgcccttttgagtttgcagttcacattgtga |
40466570 |
T |
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