View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_high_125 (Length: 251)
Name: NF0812_high_125
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_high_125 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 50101982 - 50102221
Alignment:
| Q |
1 |
attacaaagtcgtttgattcatgtagctaattccaccagtgggattagacttggttgctgttgttgttgtaacaattaaatacattgtcgattcagattt |
100 |
Q |
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| T |
50101982 |
attacaaagtcgtttgattcatgtagctaaacccaccagtgggattagacttggttgctgttgttgttgtaacaattaaatacattgtcgattcagattt |
50102081 |
T |
|
| Q |
101 |
cgatgagcttgatatgattaaagactatcaaaaatatatgttttatgattgctctgtctgtagtaaatggcctgggaaaaagcactggagggtaaccatt |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50102082 |
agatgagcttgatatgattaaagaccatcaaaaatatatgttttatgattgctctgtctgtagtaaatggcctgggaaaaagcactggagggtaaccatt |
50102181 |
T |
|
| Q |
201 |
actatgttgatctaattgtttcttgggttatgtttttcat |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
50102182 |
actatgttgatctaattgtttcttgggttatgtttttcat |
50102221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 26299324 - 26299357
Alignment:
| Q |
38 |
agtgggattagacttggttgctgttgttgttgta |
71 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
26299324 |
agtgggataagacttggttgctgttgttgttgta |
26299357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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