View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0812_high_137 (Length: 236)

Name: NF0812_high_137
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0812_high_137
NF0812_high_137
[»] chr1 (21 HSPs)
chr1 (1-213)||(18324908-18325120)
chr1 (166-210)||(213246-213290)
chr1 (166-210)||(12119386-12119430)
chr1 (129-200)||(4347028-4347099)
chr1 (154-213)||(34875042-34875101)
chr1 (166-208)||(32369996-32370038)
chr1 (166-210)||(3016238-3016280)
chr1 (146-210)||(5268295-5268359)
chr1 (174-206)||(48635165-48635197)
chr1 (146-200)||(5930814-5930868)
chr1 (141-195)||(25061285-25061339)
chr1 (173-203)||(33693085-33693115)
chr1 (113-210)||(34915142-34915240)
chr1 (117-210)||(47978349-47978443)
chr1 (154-211)||(15515022-15515079)
chr1 (153-210)||(35961444-35961501)
chr1 (129-194)||(40352451-40352516)
chr1 (98-138)||(25061358-25061398)
chr1 (166-210)||(26373509-26373553)
chr1 (166-210)||(44786883-44786927)
chr1 (148-200)||(47981815-47981867)
[»] chr7 (14 HSPs)
chr7 (122-208)||(33853404-33853491)
chr7 (129-210)||(45557441-45557523)
chr7 (146-210)||(12306799-12306863)
chr7 (146-210)||(40491654-40491718)
chr7 (126-200)||(29829293-29829368)
chr7 (173-210)||(40561730-40561767)
chr7 (113-206)||(27571942-27572036)
chr7 (173-207)||(41010035-41010069)
chr7 (113-216)||(17111915-17112020)
chr7 (173-210)||(40795961-40795998)
chr7 (156-200)||(15311230-15311274)
chr7 (146-198)||(38230121-38230173)
chr7 (146-194)||(39634169-39634217)
chr7 (146-210)||(42668191-42668255)
[»] chr4 (19 HSPs)
chr4 (120-210)||(33843787-33843878)
chr4 (173-210)||(8604594-8604631)
chr4 (104-200)||(22699757-22699854)
chr4 (126-200)||(22980698-22980773)
chr4 (126-200)||(22994285-22994360)
chr4 (166-204)||(36639877-36639915)
chr4 (173-210)||(35065139-35065176)
chr4 (177-210)||(55927746-55927779)
chr4 (150-210)||(12667158-12667218)
chr4 (156-207)||(32634085-32634136)
chr4 (100-194)||(36150625-36150720)
chr4 (128-201)||(39672969-39673043)
chr4 (146-211)||(29778999-29779064)
chr4 (157-210)||(54487248-54487301)
chr4 (146-210)||(1023863-1023927)
chr4 (166-210)||(17898093-17898137)
chr4 (166-210)||(22250302-22250346)
chr4 (113-208)||(22683942-22684038)
chr4 (178-210)||(56241884-56241916)
[»] chr3 (21 HSPs)
chr3 (99-213)||(51285643-51285758)
chr3 (139-210)||(3776598-3776669)
chr3 (166-209)||(41591318-41591361)
chr3 (128-207)||(49526667-49526747)
chr3 (146-200)||(7012670-7012724)
chr3 (146-196)||(10334172-10334222)
chr3 (146-210)||(30958112-30958177)
chr3 (146-210)||(30973924-30973989)
chr3 (166-210)||(41596114-41596158)
chr3 (146-216)||(1114908-1114978)
chr3 (172-210)||(31708210-31708248)
chr3 (146-191)||(10852730-10852775)
chr3 (146-203)||(32523279-32523336)
chr3 (141-210)||(46853474-46853543)
chr3 (173-210)||(51667211-51667248)
chr3 (146-210)||(1441352-1441416)
chr3 (182-210)||(5406980-5407008)
chr3 (146-194)||(10853284-10853332)
chr3 (148-196)||(31766194-31766242)
chr3 (146-210)||(35253412-35253476)
chr3 (146-194)||(42644298-42644346)
[»] chr8 (14 HSPs)
chr8 (123-210)||(2778589-2778677)
chr8 (156-210)||(2764424-2764478)
chr8 (166-209)||(35495067-35495110)
chr8 (146-200)||(19649224-19649278)
chr8 (127-200)||(14930216-14930289)
chr8 (174-210)||(32927968-32928004)
chr8 (173-209)||(43492209-43492245)
chr8 (178-212)||(35035453-35035487)
chr8 (173-210)||(9461510-9461547)
chr8 (146-207)||(10368044-10368105)
chr8 (98-194)||(39219765-39219862)
chr8 (173-213)||(8252871-8252911)
chr8 (146-198)||(15206736-15206788)
chr8 (174-210)||(37684481-37684517)
[»] chr2 (13 HSPs)
chr2 (129-207)||(3853932-3854011)
chr2 (146-195)||(12110918-12110967)
chr2 (157-210)||(15220817-15220870)
chr2 (126-200)||(23359924-23359999)
chr2 (173-211)||(4908865-4908903)
chr2 (141-211)||(10918631-10918701)
chr2 (173-210)||(1976836-1976873)
chr2 (173-210)||(4894129-4894166)
chr2 (173-210)||(16518854-16518891)
chr2 (180-209)||(40401622-40401651)
chr2 (173-205)||(4119399-4119431)
chr2 (174-210)||(33019129-33019165)
chr2 (174-210)||(33047555-33047591)
[»] scaffold0172 (1 HSPs)
scaffold0172 (146-195)||(15274-15323)
[»] chr5 (12 HSPs)
chr5 (101-201)||(34250253-34250354)
chr5 (146-213)||(28973930-28973997)
chr5 (146-200)||(22811070-22811124)
chr5 (167-209)||(32693767-32693809)
chr5 (166-207)||(4306591-4306632)
chr5 (173-210)||(36927659-36927696)
chr5 (146-210)||(14671101-14671164)
chr5 (150-210)||(29184352-29184412)
chr5 (146-200)||(621308-621362)
chr5 (129-193)||(19784864-19784929)
chr5 (174-210)||(10860327-10860363)
chr5 (146-210)||(13253097-13253160)
[»] scaffold0361 (1 HSPs)
scaffold0361 (173-210)||(14086-14123)
[»] chr6 (12 HSPs)
chr6 (173-210)||(34620962-34620999)
chr6 (173-210)||(34748399-34748436)
chr6 (146-210)||(1499976-1500040)
chr6 (174-210)||(4910984-4911020)
chr6 (172-207)||(957594-957629)
chr6 (155-210)||(7952669-7952724)
chr6 (147-213)||(26692444-26692510)
chr6 (173-210)||(882762-882799)
chr6 (122-205)||(19601372-19601456)
chr6 (174-210)||(25195339-25195375)
chr6 (174-210)||(29338570-29338606)
chr6 (173-213)||(34063385-34063425)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 18324908 - 18325120
Alignment:
Q  1 ctctggaagattgagtagactgttttaaatcgtgtgacttttctaaatacatgacaggaagccaacttagttcttacttctagttcattaaaatttgcta 100  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18324908 ctctggaagattgagtagtctgttttaaatcttgtgacttttctaaatacattacaggaagccaacttagttcttacttctagttcattaaaatttgcta 18325007  T
Q  101 agtgtgtgcttagttctgcgttgacaaaaattgattttaatgaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattca 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18325008 agtgtgtgcttagttctgcgttgacaaaagttgattttaatgaactgattttggctaaaagtcacttgaatataaagtgatttatgtatggatacattca 18325107  T
Q  201 tgtaaaagtgggt 213  Q
    |||||||||||||    
T  18325108 tgtaaaagtgggt 18325120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 213246 - 213290
Alignment:
Q  166 ttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||    
T  213246 ttgaatgtaaagtgatttatgtttggatacatgcatgtaaaagtg 213290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 12119430 - 12119386
Alignment:
Q  166 ttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||||||||||||||||||||||||||| || |||||||||||||    
T  12119430 ttgaatataaagtgatttatgtttggattcaatcatgtaaaagtg 12119386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 4347099 - 4347028
Alignment:
Q  129 aattgattttaatgaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattca 200  Q
    ||||||||||   ||| ||||||||| ||||||| | |||||| ||||||||||||||||||||||| ||||    
T  4347099 aattgattttgtagaattgattttggttaaaagtgagttgaatgtaaagtgatttatgtttggataccttca 4347028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 34875042 - 34875101
Alignment:
Q  154 gctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtgggt 213  Q
    ||||||||||| |||| | ||||||||||||| |||||||| ||||||| ||||||||||    
T  34875042 gctaaaagtcagttgattgtaaagtgatttatctttggataaattcatgcaaaagtgggt 34875101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 32369996 - 32370038
Alignment:
Q  166 ttgaatataaagtgatttatgtttggatacattcatgtaaaag 208  Q
    |||| ||||||||||||| ||||||||||||||||||||||||    
T  32369996 ttgattataaagtgatttgtgtttggatacattcatgtaaaag 32370038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 3016280 - 3016238
Alignment:
Q  166 ttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||||||||||||||  |||||||||||||||||||||||||||    
T  3016280 ttgaatataaagtgat--atgtttggatacattcatgtaaaagtg 3016238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 5268359 - 5268295
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||| || |||||||| | |||||| ||||||||||| |||||| ||| |||||||||||||||    
T  5268359 tgattctgcctaaaagtgagttgaatgtaaagtgatttttgtttgaatatattcatgtaaaagtg 5268295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 48635165 - 48635197
Alignment:
Q  174 aaagtgatttatgtttggatacattcatgtaaa 206  Q
    |||||||||||||||||||||||||||||||||    
T  48635165 aaagtgatttatgtttggatacattcatgtaaa 48635197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 5930868 - 5930814
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattca 200  Q
    ||||||||| ||||||| | |||||| ||||||||||||||||||| ||| ||||    
T  5930868 tgattttggttaaaagtaaattgaatgtaaagtgatttatgtttggttaccttca 5930814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 25061339 - 25061285
Alignment:
Q  141 tgaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggatac 195  Q
    |||| ||||||||| ||||||| | ||||| ||||| ||||||||||||||||||    
T  25061339 tgaattgattttggttaaaagtgagttgaacataaattgatttatgtttggatac 25061285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 203
Target Start/End: Complemental strand, 33693115 - 33693085
Alignment:
Q  173 taaagtgatttatgtttggatacattcatgt 203  Q
    |||||||||||||||||||||||||||||||    
T  33693115 taaagtgatttatgtttggatacattcatgt 33693085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 34915240 - 34915142
Alignment:
Q  113 gttctgcgttgacaaaaattgattttaa-tgaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||||| ||||| | |||||||||||| |||| | ||  || |||||||| | ||| |  |||| ||||||||||||| |||||||||||||||||||    
T  34915240 gttctgctttgactagaattgattttaagtgaatttataatgactaaaagtgagttgcaggtaaaatgatttatgtttgaatacattcatgtaaaagtg 34915142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 210
Target Start/End: Original strand, 47978349 - 47978443
Alignment:
Q  117 tgcgttgacaaaaattgattttaa-tgaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||| |||||| |||| ||||| | |||| ||||||||| ||||||| | |||||| |||||||||||||| ||||||  ||| |||| ||||||    
T  47978349 tgcggtgacaagaattcattttgagtgaattgattttgggtaaaagtgagttgaatgtaaagtgatttatggttggatgtatttatgtcaaagtg 47978443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 15515022 - 15515079
Alignment:
Q  154 gctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtgg 211  Q
    ||||||||| | |||||  ||||| |||||||| ||||||| ||||||||||||||||    
T  15515022 gctaaaagtgagttgaaggtaaagcgatttatgattggataaattcatgtaaaagtgg 15515079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 35961501 - 35961444
Alignment:
Q  153 ggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||||||||| | |||||  |||| ||||||||||||  |||||||||||||||||||    
T  35961501 ggctaaaagtgagttgaaggtaaaatgatttatgtttctatacattcatgtaaaagtg 35961444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 40352516 - 40352451
Alignment:
Q  129 aattgattttaatgaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggata 194  Q
    ||||||||||   ||| ||||||||| ||||||| | || ||| ||||||||||||||||||||||    
T  40352516 aattgattttgtggaattgattttggttaaaagtgagtttaatgtaaagtgatttatgtttggata 40352451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 25061398 - 25061358
Alignment:
Q  98 ctaagtgtgtgcttagttctgcgttgacaaaaattgatttt 138  Q
    ||||||||||| || |||||||| |||||||||||||||||    
T  25061398 ctaagtgtgtgtttggttctgcggtgacaaaaattgatttt 25061358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 26373509 - 26373553
Alignment:
Q  166 ttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||||| |||||||||||||  ||| |||||||||||||||||||    
T  26373509 ttgaatgtaaagtgatttatacttgtatacattcatgtaaaagtg 26373553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 44786883 - 44786927
Alignment:
Q  166 ttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||||| |||| ||||||||||| | |||||||||||||||||||    
T  44786883 ttgaatgtaaaatgatttatgttcgaatacattcatgtaaaagtg 44786927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 47981815 - 47981867
Alignment:
Q  148 attttggctaaaagtcacttgaatataaagtgatttatgtttggatacattca 200  Q
    ||||||| ||||| | | |||||| ||||||||||||||||||||||| ||||    
T  47981815 attttggttaaaattgagttgaatttaaagtgatttatgtttggataccttca 47981867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 208
Target Start/End: Original strand, 33853404 - 33853491
Alignment:
Q  122 tgacaaaaattgattttaa-tgaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaag 208  Q
    ||||||||||||||||| | |||| ||||| ||||||| ||| | |||||  ||||||||||||||||||||||||||||||||||||    
T  33853404 tgacaaaaattgatttttagtgaattgattctggctaagagtgagttgaagctaaagtgatttatgtttggatacattcatgtaaaag 33853491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 45557523 - 45557441
Alignment:
Q  129 aattgatttt-aatgaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||||||||| |||||| ||||| || |||||||| | |||||  ||||||||||| ||||||||||||||||||||||||||    
T  45557523 aattgattttgaatgaattgattctgactaaaagtgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtg 45557441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 12306863 - 12306799
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||| ||||||||||| | ||||| |||||||||||||||||||| || |||||||||||||||    
T  12306863 tgattctggctaaaagtgagttgaagataaagtgatttatgtttggctagattcatgtaaaagtg 12306799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 40491718 - 40491654
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||||||| |||||||| | |||||  ||||||||||||| ||||||||||||||||||||||||    
T  40491718 tgattttgactaaaagtgagttgaaggtaaagtgatttatttttggatacattcatgtaaaagtg 40491654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 29829293 - 29829368
Alignment:
Q  126 aaaaattgatttt-aatgaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattca 200  Q
    ||||||||||| | |||||| ||||| ||||||||| | | |||||| ||||||||||||||||||||||||||||    
T  29829293 aaaaattgattctgaatgaattgattctggctaaaaatgagttgaatgtaaagtgatttatgtttggatacattca 29829368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 40561730 - 40561767
Alignment:
Q  173 taaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40561730 taaagtgatttatgtttggatacattcatgtaaaagtg 40561767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 27572036 - 27571942
Alignment:
Q  113 gttctgcgttgacaaaaattgattttaa-tgaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaa 206  Q
    |||||| |||||||||||||||||||   |||| ||||| ||||||||||| | || ||  |||| ||||||||| ||||||||||| |||||||    
T  27572036 gttctgtgttgacaaaaattgattttgggtgaattgattatggctaaaagtgagttaaaggtaaaatgatttatggttggatacatttatgtaaa 27571942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 41010069 - 41010035
Alignment:
Q  173 taaagtgatttatgtttggatacattcatgtaaaa 207  Q
    |||||| ||||||||||||||||||||||||||||    
T  41010069 taaagtaatttatgtttggatacattcatgtaaaa 41010035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 216
Target Start/End: Complemental strand, 17112020 - 17111915
Alignment:
Q  113 gttctgcgttgacaaa-aattgattttaa-tgaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||||| ||||| || |||||||||| | |||| |||||||| |||||| | | ||| |  ||||||||||| ||||||||| ||||||||||||| ||    
T  17112020 gttctgctttgactaagaattgattttgagtgaattgattttgactaaaattgaattgtaggtaaagtgatttgtgtttggatgcattcatgtaaaaatg 17111921  T
Q  211 ggtaga 216  Q
     |||||    
T  17111920 agtaga 17111915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 40795961 - 40795998
Alignment:
Q  173 taaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  40795961 taaagtggtttatgattggatacattcatgtaaaagtg 40795998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 15311230 - 15311274
Alignment:
Q  156 taaaagtcacttgaatataaagtgatttatgtttggatacattca 200  Q
    ||||||| | |||||| || |||||||||||||||||||||||||    
T  15311230 taaaagtgagttgaatgtatagtgatttatgtttggatacattca 15311274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 38230173 - 38230121
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacatt 198  Q
    ||||||||| ||||||| | |||||| | || |||||||||||||||||||||    
T  38230173 tgattttggttaaaagtgagttgaatgtgaattgatttatgtttggatacatt 38230121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 39634169 - 39634217
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggata 194  Q
    ||||||||| ||||||| | |||||||| || |||||||||||||||||    
T  39634169 tgattttggttaaaagtgagttgaatatgaattgatttatgtttggata 39634217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 42668255 - 42668191
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||||||||||||||||  |||| |  |||||| |||||||||||||||||| |||  |||||||    
T  42668255 tgattttggctaaaagtgtcttggaggtaaagtaatttatgtttggatacatacattgaaaagtg 42668191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 120 - 210
Target Start/End: Complemental strand, 33843878 - 33843787
Alignment:
Q  120 gttgacaaaaattgattttaat-gaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||||||||||||||||| || ||| ||||| ||||||||||| | ||| || |||||||||||||||||||||| |||||||||| ||||    
T  33843878 gttgacaaaaattgattttgattgaattgattctggctaaaagtgagttggatgtaaagtgatttatgtttggatatattcatgtaatagtg 33843787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 8604594 - 8604631
Alignment:
Q  173 taaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8604594 taaagtgatttatgtttggatacattcatgtaaaagtg 8604631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 200
Target Start/End: Complemental strand, 22699854 - 22699757
Alignment:
Q  104 gtgtgcttagttctgcgttgacaaaaattgattttaat-gaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattca 200  Q
    ||||| || ||| |||| ||| |||||||||||||  | ||| ||||||||| ||||||| | |||||| ||||||||||||||||||||||| ||||    
T  22699854 gtgtgtttggttgtgcggtgaaaaaaattgattttggtagaattgattttggttaaaagtaagttgaatgtaaagtgatttatgtttggataccttca 22699757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 22980698 - 22980773
Alignment:
Q  126 aaaaattgattttaat-gaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattca 200  Q
    |||||||||||||  | ||| ||||||||| ||||||| | |||||| ||||||||||||||||||||||| ||||    
T  22980698 aaaaattgattttggtagaattgattttggttaaaagtaagttgaatgtaaagtgatttatgtttggataccttca 22980773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 22994285 - 22994360
Alignment:
Q  126 aaaaattgattttaat-gaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattca 200  Q
    |||||||||||||  | ||| ||||||||| ||||||| | |||||| ||||||||||||||||||||||| ||||    
T  22994285 aaaaattgattttggtagaattgattttggttaaaagtaagttgaatgtaaagtgatttatgtttggataccttca 22994360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 36639915 - 36639877
Alignment:
Q  166 ttgaatataaagtgatttatgtttggatacattcatgta 204  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  36639915 ttgaagataaagtgatttatgtttggatacattcatgta 36639877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 35065176 - 35065139
Alignment:
Q  173 taaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  35065176 taaagtgatttgtgtttggatacattcatgtaaaagtg 35065139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 210
Target Start/End: Original strand, 55927746 - 55927779
Alignment:
Q  177 gtgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||||||||||||||||||||||||||||||||    
T  55927746 gtgatttatgtttggatacattcatgtaaaagtg 55927779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 12667158 - 12667218
Alignment:
Q  150 tttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||| |||||||| | |||||| ||||||||||||  ||||||||||||||||| ||||||    
T  12667158 tttgactaaaagtgatttgaatgtaaagtgatttacctttggatacattcatgtgaaagtg 12667218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 32634136 - 32634085
Alignment:
Q  156 taaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaa 207  Q
    ||||||| |||||||| ||| |||||||||||||| || |||||||||||||    
T  32634136 taaaagtgacttgaatgtaatgtgatttatgtttgaatgcattcatgtaaaa 32634085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 194
Target Start/End: Complemental strand, 36150720 - 36150625
Alignment:
Q  100 aagtgtgtgcttagttctgcgttgacaaaaattgattttaatg-aactgattttggctaaaagtcacttgaatataaagtgatttatgtttggata 194  Q
    ||||||||| || ||| |||| |||| | |||||||||| ||  || ||||||||  ||||||| | |||||| ||||||||||||||||||||||    
T  36150720 aagtgtgtgtttggttgtgcggtgacgagaattgattttgatataattgattttgattaaaagtgagttgaatgtaaagtgatttatgtttggata 36150625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 39673043 - 39672969
Alignment:
Q  128 aaattgattttaat-gaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcat 201  Q
    ||||||||||| || ||||||||||| | ||||| | | ||||||||| |||||||||||||  |||||||||||    
T  39673043 aaattgattttgattgaactgattttagttaaaacttagttgaatatagagtgatttatgttaagatacattcat 39672969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 29778999 - 29779064
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtgg 211  Q
    ||||| ||| ||||||| | |||||||||||||||||||| |||||||  |||  |||||||||||    
T  29778999 tgattatggataaaagtgagttgaatataaagtgatttatctttggatgtatttgtgtaaaagtgg 29779064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 54487248 - 54487301
Alignment:
Q  157 aaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||||| | |||||| |||| ||||||||||||||||||||| |||| ||||||    
T  54487248 aaaagtgagttgaatgtaaattgatttatgtttggatacattgatgtgaaagtg 54487301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 1023863 - 1023927
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||||| ||||||||| | |||||  ||||||||||| |||||||||| ||| |||| ||||||    
T  1023863 tgattttagctaaaagtgagttgaaggtaaagtgatttttgtttggatatattgatgtgaaagtg 1023927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 17898093 - 17898137
Alignment:
Q  166 ttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||||| |||||||||||||||||||||| ||| | |||||||||    
T  17898093 ttgaatgtaaagtgatttatgtttggatatatttaggtaaaagtg 17898137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 22250346 - 22250302
Alignment:
Q  166 ttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||||| | ||||||||||  ||||||||||||||||||||||||    
T  22250346 ttgaatgtgaagtgatttacatttggatacattcatgtaaaagtg 22250302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 208
Target Start/End: Complemental strand, 22684038 - 22683942
Alignment:
Q  113 gttctgcgttgacaaaaattgatttta-atgaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaag 208  Q
    |||||||  |||||||||| ||||||| ||||| |||||||   ||||||| | |||||  |||| || |||||||||||| ||||| |||||||||    
T  22684038 gttctgcagtgacaaaaatagattttagatgaattgattttacttaaaagtgagttgaaagtaaaatggtttatgtttggacacatttatgtaaaag 22683942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 56241884 - 56241916
Alignment:
Q  178 tgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||||||||||||||||||| |||||||||||    
T  56241884 tgatttatgtttggatacattaatgtaaaagtg 56241916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 51285758 - 51285643
Alignment:
Q  99 taagtgtgtgcttagttctgcgttgacaaaaattgattttaa-tgaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacat 197  Q
    |||||||||| || ||| |||| ||| ||||||||||||| | |||| | ||| ||||||||||| | |||||| |||||| ||| ||| ||||||||||    
T  51285758 taagtgtgtgtttggttttgcggtgagaaaaattgattttgagtgaatttattatggctaaaagtgagttgaatgtaaagtaattcatgcttggatacat 51285659  T
Q  198 tcatgtaaaagtgggt 213  Q
    ||||||||||| ||||    
T  51285658 tcatgtaaaagcgggt 51285643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 3776669 - 3776598
Alignment:
Q  139 aatgaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||||| ||||| ||||||||| | | |||||| |||||||||||||| ||||||||||| |||||||||||    
T  3776669 aatgaattgattctggctaaaattgagttgaatgtaaagtgatttatgcttggatacattgatgtaaaagtg 3776598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 41591318 - 41591361
Alignment:
Q  166 ttgaatataaagtgatttatgtttggatacattcatgtaaaagt 209  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  41591318 ttgaatttaaagtgatttatgtttggatacattcatgtaaaagt 41591361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 207
Target Start/End: Original strand, 49526667 - 49526747
Alignment:
Q  128 aaattgattttaat-gaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaa 207  Q
    ||||||||||| || ||| ||||||||  ||||||| | |||| | |||| ||||||||||||||||||||||||||||||    
T  49526667 aaattgattttgatagaattgattttgattaaaagtgaattgattgtaaattgatttatgtttggatacattcatgtaaaa 49526747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 7012724 - 7012670
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattca 200  Q
    ||||||||| ||||||| | |||||| ||||||||||||||||||||||| ||||    
T  7012724 tgattttggttaaaagtgagttgaatgtaaagtgatttatgtttggataccttca 7012670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 10334222 - 10334172
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggataca 196  Q
    ||||||||| ||||||||| |||||||| || |||||||||||||||||||    
T  10334222 tgattttggttaaaagtcagttgaatatgaattgatttatgtttggataca 10334172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 30958177 - 30958112
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtg-atttatgtttggatacattcatgtaaaagtg 210  Q
    |||||||||||||| || | |||||| ||||||  ||||||||||||||| |||||||||||||||    
T  30958177 tgattttggctaaatgtgagttgaatgtaaagtttatttatgtttggatatattcatgtaaaagtg 30958112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 30973989 - 30973924
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtg-atttatgtttggatacattcatgtaaaagtg 210  Q
    |||||||||||||| || | |||||| ||||||  ||||||||||||||| |||||||||||||||    
T  30973989 tgattttggctaaatgtgagttgaatgtaaagtttatttatgtttggatatattcatgtaaaagtg 30973924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 41596114 - 41596158
Alignment:
Q  166 ttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||||| ||||||||||| |||||||||||||||||| |||||||    
T  41596114 ttgaatgtaaagtgatttctgtttggatacattcatggaaaagtg 41596158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 1114978 - 1114908
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtgggtaga 216  Q
    ||||||| ||||||| | | |||||||||||||||||| |||||  ||| |||||||| |||||| |||||    
T  1114978 tgattttcgctaaaaataagttgaatataaagtgatttgtgtttatatatattcatgttaaagtgagtaga 1114908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 31708210 - 31708248
Alignment:
Q  172 ataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  31708210 ataaagtggtttgtgtttggatacattcatgtaaaagtg 31708248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 10852730 - 10852775
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttgg 191  Q
    ||||||||| ||||||| | |||||| |||||||||||||||||||    
T  10852730 tgattttggttaaaagtgagttgaatgtaaagtgatttatgtttgg 10852775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 32523279 - 32523336
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgt 203  Q
    ||||||||  ||||||| | ||||| |||||||||||| ||||||||| |||||||||    
T  32523279 tgattttgattaaaagttagttgaagataaagtgatttgtgtttggatgcattcatgt 32523336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 46853474 - 46853543
Alignment:
Q  141 tgaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||| |||||||||||| |||| | |||||  |||||||||||||||  ||||| ||| |||||||||||    
T  46853474 tgaattgattttggctacaagtaagttgaaggtaaagtgatttatgtcaggatatatttatgtaaaagtg 46853543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 51667248 - 51667211
Alignment:
Q  173 taaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||||||||||||||||| || |||||||||||||||    
T  51667248 taaagtgatttatgtttgggtagattcatgtaaaagtg 51667211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 1441352 - 1441416
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||| || |||||||| | |||||  ||||||||||| ||||| |||||||||| |||||||||    
T  1441352 tgattctgtctaaaagtgagttgaacgtaaagtgatttgtgtttagatacattcacgtaaaagtg 1441416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 5407008 - 5406980
Alignment:
Q  182 ttatgtttggatacattcatgtaaaagtg 210  Q
    |||||||||||||||||||||||||||||    
T  5407008 ttatgtttggatacattcatgtaaaagtg 5406980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 10853284 - 10853332
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggata 194  Q
    ||||||||| ||||||| | || |||||||| |||||||||||||||||    
T  10853284 tgattttggttaaaagtgagtttaatataaattgatttatgtttggata 10853332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 31766194 - 31766242
Alignment:
Q  148 attttggctaaaagtcacttgaatataaagtgatttatgtttggataca 196  Q
    ||||||| ||||||| | |||||  ||||||||||||||||||||||||    
T  31766194 attttggataaaagtgagttgaagttaaagtgatttatgtttggataca 31766242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 35253412 - 35253476
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||||||||||||| | | || ||  ||||||||||||| |||||| ||| |||||||||||||    
T  35253412 tgattttggctaaaattgagtttaaggtaaagtgatttatatttggaaacaatcatgtaaaagtg 35253476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 42644346 - 42644298
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggata 194  Q
    ||||||| | ||||||| | |||||| ||||||||||||||||||||||    
T  42644346 tgattttagttaaaagtgagttgaatgtaaagtgatttatgtttggata 42644298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 210
Target Start/End: Complemental strand, 2778677 - 2778589
Alignment:
Q  123 gacaaaaattgattttaa-tgaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||||||||||||||||  |||||||||| | ||||||||| | ||||| |||||||||||||| |||||||| ||| ||| |||||||    
T  2778677 gacaaaaattgattttatgtgaactgattctagctaaaagtgagttgaagataaagtgatttatttttggataaatttatgcaaaagtg 2778589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 2764424 - 2764478
Alignment:
Q  156 taaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||||| | |||||||||||||||||||| |||||||||||||| |||||||||    
T  2764424 taaaagtaagttgaatataaagtgatttatatttggatacattcacgtaaaagtg 2764478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 35495110 - 35495067
Alignment:
Q  166 ttgaatataaagtgatttatgtttggatacattcatgtaaaagt 209  Q
    |||||||||||||||||| |||||||||| ||||||||||||||    
T  35495110 ttgaatataaagtgatttgtgtttggatatattcatgtaaaagt 35495067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 19649278 - 19649224
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattca 200  Q
    ||||||||| ||||||| | |||||| ||||||||||||||||||||||| ||||    
T  19649278 tgattttggttaaaagtgagttgaatgtaaagtgatttatgtttggataccttca 19649224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 14930289 - 14930216
Alignment:
Q  127 aaaattgattttaatgaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattca 200  Q
    ||||||||||| |||||| |||||| || ||||||| | |||||| ||||||||| |||| ||||||| |||||    
T  14930289 aaaattgatttaaatgaattgatttaggttaaaagtaagttgaatgtaaagtgatctatgattggatatattca 14930216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 32928004 - 32927968
Alignment:
Q  174 aaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||||||||| ||||||||||||||||||||||||||    
T  32928004 aaagtgatttgtgtttggatacattcatgtaaaagtg 32927968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 43492209 - 43492245
Alignment:
Q  173 taaagtgatttatgtttggatacattcatgtaaaagt 209  Q
    |||| ||||||||||||||||||||||||||||||||    
T  43492209 taaaatgatttatgtttggatacattcatgtaaaagt 43492245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 35035453 - 35035487
Alignment:
Q  178 tgatttatgtttggatacattcatgtaaaagtggg 212  Q
    ||||||||||||| |||||||||||||||||||||    
T  35035453 tgatttatgtttgaatacattcatgtaaaagtggg 35035487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 9461510 - 9461547
Alignment:
Q  173 taaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  9461510 taaagtgatttgtgtttggatacattcatataaaagtg 9461547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 10368105 - 10368044
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaa 207  Q
    ||||||||  ||||||| | |||||  ||||||||||| ||||| |||||||||||||||||    
T  10368105 tgattttgagtaaaagtgagttgaaggtaaagtgatttgtgtttagatacattcatgtaaaa 10368044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 194
Target Start/End: Complemental strand, 39219862 - 39219765
Alignment:
Q  98 ctaagtgtgtgcttagttctgcgttgacaaaaattgattttaat-gaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggata 194  Q
    ||||||||||| || ||| |||| ||  ||||||| ||||| || ||| ||||||| | ||||||| | || ||||| ||||||||||||||||||||    
T  39219862 ctaagtgtgtgtttggttgtgcggtggaaaaaattaattttgatagaattgattttcgttaaaagtgagtttaatatgaagtgatttatgtttggata 39219765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 8252911 - 8252871
Alignment:
Q  173 taaagtgatttatgtttggatacattcatgtaaaagtgggt 213  Q
    ||||||| ||||||||| ||||||| |||||||||||||||    
T  8252911 taaagtggtttatgtttagatacatgcatgtaaaagtgggt 8252871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 15206788 - 15206736
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacatt 198  Q
    ||||||||| ||||||| | |||||| | || |||||||||||||||||||||    
T  15206788 tgattttgggtaaaagtgagttgaatgtgaattgatttatgtttggatacatt 15206736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 37684517 - 37684481
Alignment:
Q  174 aaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||||||||| |||||||||||||| |||||||||||    
T  37684517 aaagtgatttgtgtttggatacatttatgtaaaagtg 37684481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 3854011 - 3853932
Alignment:
Q  129 aattgattttaat-gaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaa 207  Q
    |||||||||| || ||| ||||||||  ||||||| | |||||| |||| ||||||||||||||||||||||||||||||    
T  3854011 aattgattttgatagaattgattttgattaaaagtgagttgaatgtaaattgatttatgtttggatacattcatgtaaaa 3853932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 12110967 - 12110918
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggatac 195  Q
    ||||||||| ||||||| | ||||||||||||||||||||||||||||||    
T  12110967 tgattttggttaaaagtgagttgaatataaagtgatttatgtttggatac 12110918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 15220817 - 15220870
Alignment:
Q  157 aaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||||| | |||||| ||||||||||||||||||||||||||||||| ||||||    
T  15220817 aaaagtgagttgaatgtaaagtgatttatgtttggatacattcatgttaaagtg 15220870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 23359924 - 23359999
Alignment:
Q  126 aaaaattgattttaat-gaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattca 200  Q
    |||||||||||||  | ||| ||||||||| ||||||| | |||||| ||||||||||||||||||||||| ||||    
T  23359924 aaaaattgattttggtagaattgattttggttaaaagtgagttgaatgtaaagtgatttatgtttggataccttca 23359999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 4908903 - 4908865
Alignment:
Q  173 taaagtgatttatgtttggatacattcatgtaaaagtgg 211  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  4908903 taaagtgatttatgtttggatacattcatgttaaagtgg 4908865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 10918701 - 10918631
Alignment:
Q  141 tgaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtgg 211  Q
    |||| ||||||||| ||||||| | |||||| |||||||||||||||||||||  |||  |||||||||||    
T  10918701 tgaattgattttggataaaagtgagttgaatgtaaagtgatttatgtttggatgtatttgtgtaaaagtgg 10918631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 1976836 - 1976873
Alignment:
Q  173 taaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||| || |||||||||||||||||||||||||||||    
T  1976836 taaagcgacttatgtttggatacattcatgtaaaagtg 1976873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 4894129 - 4894166
Alignment:
Q  173 taaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  4894129 taaagtgatttatgtttagatacattcatttaaaagtg 4894166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 16518891 - 16518854
Alignment:
Q  173 taaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  16518891 taaaatgatttgtgtttggatacattcatgtaaaagtg 16518854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 209
Target Start/End: Original strand, 40401622 - 40401651
Alignment:
Q  180 atttatgtttggatacattcatgtaaaagt 209  Q
    ||||||||||||||||||||||||||||||    
T  40401622 atttatgtttggatacattcatgtaaaagt 40401651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 4119399 - 4119431
Alignment:
Q  173 taaagtgatttatgtttggatacattcatgtaa 205  Q
    |||||||||||||||||| ||||||||||||||    
T  4119399 taaagtgatttatgtttgaatacattcatgtaa 4119431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 33019129 - 33019165
Alignment:
Q  174 aaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  33019129 aaagtgatttgtgtttggatgcattcatgtaaaagtg 33019165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 33047555 - 33047591
Alignment:
Q  174 aaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||||||||| |||||||||||||| |||||||||||    
T  33047555 aaagtgatttgtgtttggatacatttatgtaaaagtg 33047591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 15274 - 15323
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggatac 195  Q
    ||||||||| ||||||| | ||||||||||||||||||||||||||||||    
T  15274 tgattttggttaaaagtgagttgaatataaagtgatttatgtttggatac 15323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 201
Target Start/End: Original strand, 34250253 - 34250354
Alignment:
Q  101 agtgtgtgcttagttctgcgttgacaaaaattgattttaa-tgaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattc 199  Q
    |||||||| |||||||| || ||| ||||||||||||| | |||| |||||||| ||| || | | |||||  |||||||||||||||||||| ||||||    
T  34250253 agtgtgtgtttagttctacggtgagaaaaattgattttgagtgaattgattttgactataattgagttgaagctaaagtgatttatgtttggaaacattc 34250352  T
Q  200 at 201  Q
    ||    
T  34250353 at 34250354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 28973997 - 28973930
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtgggt 213  Q
    ||||| |||| |||||| | |||||||||| |||||||||||||| ||||| | ||||||||||||||    
T  28973997 tgattctggccaaaagtgagttgaatataatgtgatttatgtttgaatacactgatgtaaaagtgggt 28973930  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 22811124 - 22811070
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattca 200  Q
    ||||||||| ||||||| | |||||| ||||||||||||||||||||||| ||||    
T  22811124 tgattttggttaaaagtgagttgaatgtaaagtgatttatgtttggataccttca 22811070  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 32693809 - 32693767
Alignment:
Q  167 tgaatataaagtgatttatgtttggatacattcatgtaaaagt 209  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  32693809 tgaatataaagtgatttatatttggatacattcatgcaaaagt 32693767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 4306632 - 4306591
Alignment:
Q  166 ttgaatataaagtgatttatgtttggatacattcatgtaaaa 207  Q
    |||||| |||| ||||||||||||||||||||||||||||||    
T  4306632 ttgaatgtaaaatgatttatgtttggatacattcatgtaaaa 4306591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 36927659 - 36927696
Alignment:
Q  173 taaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  36927659 taaagtgatttatgtttggatacattcctgtaaaagtg 36927696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 14671164 - 14671101
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||| ||||||||||| | |||||| | |||| |||||||||||||| ||||||||||||||||    
T  14671164 tgattatggctaaaagtgaattgaatgtgaagt-atttatgtttggatgcattcatgtaaaagtg 14671101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 29184352 - 29184412
Alignment:
Q  150 tttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||| |||||||| | |||||| ||||||||||||  ||||||||||||||||| ||||||    
T  29184352 tttgactaaaagtgatttgaatgtaaagtgatttacctttggatacattcatgtgaaagtg 29184412  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 621308 - 621362
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattca 200  Q
    ||||||||| ||||| ||| |||||| |||||||||||||| |||||||| ||||    
T  621308 tgattttggttaaaattcagttgaatttaaagtgatttatgattggataccttca 621362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 19784929 - 19784864
Alignment:
Q  129 aattgattttaat-gaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggat 193  Q
    ||||||||||| | ||| ||||||||| ||||||| | |||||| ||||||| |||||||||||||    
T  19784929 aattgattttatttgaattgattttggttaaaagtgagttgaatgtaaagtggtttatgtttggat 19784864  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 10860327 - 10860363
Alignment:
Q  174 aaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  10860327 aaagtgatttatgttcggatacattcatgtgaaagtg 10860363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 13253097 - 13253160
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||||||| ||||||| | |||||||| || ||||| ||||||||||||| |||| ||||||||    
T  13253097 tgattttggttaaaagtgagttgaatatgaattgatt-atgtttggatacactcatttaaaagtg 13253160  T

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Target: scaffold0361 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 14086 - 14123
Alignment:
Q  173 taaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  14086 taaagtgatttatgtttggatacattcatgtgaaagtg 14123  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 34620999 - 34620962
Alignment:
Q  173 taaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||||||||||||||||||||||||| |||||||||||    
T  34620999 taaagtgatttatgtttggatacatttatgtaaaagtg 34620962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 34748436 - 34748399
Alignment:
Q  173 taaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||||||||||||||||||||||||| |||||||||||    
T  34748436 taaagtgatttatgtttggatacatttatgtaaaagtg 34748399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 1500040 - 1499976
Alignment:
Q  146 tgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||||||||||||||  | |||| | |||| ||||||||||||| ||||||| |||||||||||    
T  1500040 tgattttggctaaaagcgagttgagtgtaaattgatttatgtttgaatacatttatgtaaaagtg 1499976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 4911020 - 4910984
Alignment:
Q  174 aaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||||||||||||||||||||||| |||||||||||    
T  4911020 aaagtgatttatgtttggatacatttatgtaaaagtg 4910984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 957594 - 957629
Alignment:
Q  172 ataaagtgatttatgtttggatacattcatgtaaaa 207  Q
    ||||| ||||||||||||||||||||||||||||||    
T  957594 ataaaatgatttatgtttggatacattcatgtaaaa 957629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 7952669 - 7952724
Alignment:
Q  155 ctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||||||| | |||||||||||||||| ||| |||||||| ||||||| |||||||    
T  7952669 ctaaaagtgagttgaatataaagtgatgtatatttggatatattcatgcaaaagtg 7952724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 26692444 - 26692510
Alignment:
Q  147 gattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaaaagtgggt 213  Q
    ||||||||| |||||| | ||||||||||| || ||||||| | ||||||||||| |||| ||||||    
T  26692444 gattttggcaaaaagtgagttgaatataaactggtttatgtgtagatacattcatataaacgtgggt 26692510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 882799 - 882762
Alignment:
Q  173 taaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  882799 taaaatgatttatgtttggatacattcatgcaaaagtg 882762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 205
Target Start/End: Original strand, 19601372 - 19601456
Alignment:
Q  122 tgacaaaaattgattttaat-gaactgattttggctaaaagtcacttgaatataaagtgatttatgtttggatacattcatgtaa 205  Q
    ||||||||||||||||| || ||| |||||||  |||| ||| | ||||| ||||||| |||| | ||||| |||||||||||||    
T  19601372 tgacaaaaattgattttgattgaattgattttaactaatagtgagttgaagataaagtaatttgtatttggttacattcatgtaa 19601456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 25195339 - 25195375
Alignment:
Q  174 aaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    |||||||||| |||||||||||||| |||||||||||    
T  25195339 aaagtgatttgtgtttggatacatttatgtaaaagtg 25195375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 29338570 - 29338606
Alignment:
Q  174 aaagtgatttatgtttggatacattcatgtaaaagtg 210  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  29338570 aaagtgatttatgtttggatatatttatgtaaaagtg 29338606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 34063425 - 34063385
Alignment:
Q  173 taaagtgatttatgtttggatacattcatgtaaaagtgggt 213  Q
    ||||||||||||||||||| || ||| ||||||||||||||    
T  34063425 taaagtgatttatgtttggttatatttatgtaaaagtgggt 34063385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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