View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_high_147 (Length: 204)
Name: NF0812_high_147
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_high_147 |
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Alignment Details
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 32881123 - 32881210
Alignment:
| Q |
101 |
ctaataaaaaattaaagactgttagcacgatccagataaaaccaaaggtacagtgcaccattcattctcatcgtgttattcaaagttt |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
32881123 |
ctaataaaaaattaaagactgttagcacgatccagataaaaccaaaggtacagtgcaaccttcattctcatcgtgttattcaaagttt |
32881210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 32881036 - 32881084
Alignment:
| Q |
13 |
aagaatatcaaaatctatcaatagtaaagccaaaaacaacaaacctagc |
61 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32881036 |
aagaaaatcaaaatctatcaatagtaaagccaaaaacaacaaacctagc |
32881084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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