View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_high_18 (Length: 537)
Name: NF0812_high_18
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 28 - 448
Target Start/End: Complemental strand, 11390663 - 11390243
Alignment:
| Q |
28 |
cagtggtttgtttgaatacaaaccattaaactcttgcattgcatgtttagtcaaaaaccaaaatagttgaatcttatcatgttagctaagtctcatttga |
127 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11390663 |
cagttgtttgtttgaatacaaaccattaaactcttgcattgcatgtttagtcaaaaagcaaaatagttgaatcttatcatgttagctaagtctcatttga |
11390564 |
T |
|
| Q |
128 |
ctattcagaaaacatgcaatggtttggtttgaaaaatcaaaatcaacaatctacttatttccattcattcattcctcgttttatttccattcaattacta |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11390563 |
ctattcagaaaacatgcaatggtttggtttgaaaaatcaaaatcaacaatctacttatttccattcattcattcctcgttttatttccattcaattacta |
11390464 |
T |
|
| Q |
228 |
acaatgtcatcatcaccaatcaacactccttctccaccaccttatgaccgtgttaaagcggtgaaagaattcgatgaaaccaaattaggtgtaaaaggcc |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11390463 |
acaatgtcatcatcaccaatcaacactccttctccaccaccttatgaccgtgttaaagcggtgaaagaattcgatgaaaccaaattaggtgtaaaaggcc |
11390364 |
T |
|
| Q |
328 |
taacagactccggaatcaaaaccatcccatcattcttcatccatccactcgaaactctatccgacctcattccacgatcagatttcccccaaccggaaat |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11390363 |
taacagactccggaatcaaaaccatcccatcattcttcatccatccacccgaaactctatccgacctcactccacgatcagatttcccccaaccggaaat |
11390264 |
T |
|
| Q |
428 |
tcccaccatcgacctctctgc |
448 |
Q |
| |
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||||||||||||||||||||| |
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| T |
11390263 |
tcccaccatcgacctctctgc |
11390243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 262 - 445
Target Start/End: Original strand, 11433750 - 11433933
Alignment:
| Q |
262 |
caccaccttatgaccgtgttaaagcggtgaaagaattcgatgaaaccaaattaggtgtaaaaggcctaacagactccggaatcaaaaccatcccatcatt |
361 |
Q |
| |
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||||||| || |||||||| ||||| ||||||||||||| ||||| |||| || ||||||||| ||| |||||||||||||||||||| ||||| || |
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| T |
11433750 |
caccaccctacgaccgtgtgaaagccttgaaagaattcgacgaaacaaaatccggcgtaaaaggcataatcgactccggaatcaaaaccattccatcttt |
11433849 |
T |
|
| Q |
362 |
cttcatccatccactcgaaactctatccgacctcattccacgatcagatttcccccaaccggaaattcccaccatcgacctctc |
445 |
Q |
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|||||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||| |||| ||||| ||||||||||| |
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| T |
11433850 |
cttcatccatccacctgaaaccctatctgacctcactccacgatcagatttcccccaaccgaaaatccccacaatcgacctctc |
11433933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 282 - 445
Target Start/End: Original strand, 11423145 - 11423308
Alignment:
| Q |
282 |
aaagcggtgaaagaattcgatgaaaccaaattaggtgtaaaaggcctaacagactccggaatcaaaaccatcccatcattcttcatccatccactcgaaa |
381 |
Q |
| |
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||||| |||||||||||||| ||||| |||| || ||||||||| ||| |||||||||||||||||||| ||||| |||||||||||||||| |||| |
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|
| T |
11423145 |
aaagccgtgaaagaattcgacgaaacaaaatccggcgtaaaaggcttaatcgactccggaatcaaaaccattccatctttcttcatccatccacctgaaa |
11423244 |
T |
|
| Q |
382 |
ctctatccgacctcattccacgatcagatttcccccaaccggaaattcccaccatcgacctctc |
445 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||| |
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|
| T |
11423245 |
tcctatctgacctcactccacgatcagatttcccccaaccggaaatccccacaatcgacctctc |
11423308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 288 - 445
Target Start/End: Original strand, 11427898 - 11428055
Alignment:
| Q |
288 |
gtgaaagaattcgatgaaaccaaattaggtgtaaaaggcctaacagactccggaatcaaaaccatcccatcattcttcatccatccactcgaaactctat |
387 |
Q |
| |
|
|||||||||||||||||||| |||| | ||||||||| ||| |||| ||||||||||||||| ||||| ||||| || || |||| ||||||||||| |
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| T |
11427898 |
gtgaaagaattcgatgaaacaaaatccgacgtaaaaggcttaatcgacttcggaatcaaaaccattccatctttctttattcacccacccgaaactctat |
11427997 |
T |
|
| Q |
388 |
ccgacctcattccacgatcagatttcccccaaccggaaattcccaccatcgacctctc |
445 |
Q |
| |
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|||| |||| |||||||||||||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
11427998 |
ccgatctcactccacgatcagatttcccccaaccagaaattcccacaatcgacctctc |
11428055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 247
Target Start/End: Original strand, 11433682 - 11433714
Alignment:
| Q |
215 |
cattcaattactaacaatgtcatcatcaccaat |
247 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |
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| T |
11433682 |
cattcaattcctaacaatgtcatcatcaccaat |
11433714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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