View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0812_high_20 (Length: 531)

Name: NF0812_high_20
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0812_high_20
NF0812_high_20
[»] chr8 (3 HSPs)
chr8 (113-521)||(34519369-34519777)
chr8 (163-334)||(30739609-30739778)
chr8 (402-500)||(30739863-30739961)


Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 113 - 521
Target Start/End: Original strand, 34519369 - 34519777
Alignment:
Q  113 tcacggatgatcaaaaccaaaaccatgatatcaatatcacattattttcgcttttcacattgtttccccttctcctatgtttttatgtcttccatatttt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34519369 tcacggatgatcaaaaccaaaaccatgatatcaatatcacattattttcgcttttcacattgtttccccttctcctatgtttttatgtcttccatatttt 34519468  T
Q  213 aaagaagttgtaattatgataagatatcttttgattacgaaccgaaatctcaccaattgcatcataaacaaaccgattaaagaaaatgtgtttgaactac 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34519469 aaagaagttgtaattatgataagatatcttttgattacgaaccgaaatctcaccaattgcatcataaacaaaccgattaaagaaaatgtgtttgaactac 34519568  T
Q  313 ttgccgtatcaatatgttttgtatagaagatagattaaaatcctaataaacaagcattgaacattgatggaagattgatataatgtctctctattttaca 412  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34519569 ttgccatatcaatatgttttgtatagaagatagattaaaatcctaataaacaagcattgaacattgatggaagattgatataatgtctctctattttaca 34519668  T
Q  413 gggatcattagcccatgaaggtctgggccctgtttcttggtggtgatgaattcattccctggttttattcattttcaagattatgcttttagaagaaatt 512  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34519669 gggatcattagctcatgaaggtctgggccctgtttcttggtggtgatgaattcattccctggttttattcattttcaagattgtgcttttagaagaaatt 34519768  T
Q  513 ggtcctttg 521  Q
    |||||||||    
T  34519769 ggtcctttg 34519777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 163 - 334
Target Start/End: Original strand, 30739609 - 30739778
Alignment:
Q  163 cttttcacattgtttccccttctcctatgtttttatgtcttccatattttaaagaagttgtaattatgataagatatcttttgattacgaaccgaaatct 262  Q
    |||||||||| |||||| ||||||||||||||||||||||  |||||||||||| |||  ||||||| ||   |||| ||  ||||| ||||||||||||    
T  30739609 cttttcacatcgtttcctcttctcctatgtttttatgtctctcatattttaaagcagtcataattataatcttatatgtt--gattatgaaccgaaatct 30739706  T
Q  263 caccaattgcatcataaacaaaccgattaaagaaaatgtgtttgaactacttgccgtatcaatatgttttgt 334  Q
    ||   ||||||||||||| ||||| ||| ||||||  |||| |||| |||||||| ||||||||| ||||||    
T  30739707 cattgattgcatcataaaaaaaccaattcaagaaatcgtgtatgaattacttgccatatcaatatcttttgt 30739778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 402 - 500
Target Start/End: Original strand, 30739863 - 30739961
Alignment:
Q  402 tctattttacagggatcattagcccatgaaggtctgggccctgtttcttggtggtgatgaattcattccctggttttattcattttcaagattatgctt 500  Q
    |||||||||||||||||||||   ||||||||| |||| |||||||||||||||  |||||||||||||| | ||||||||||||||||||||| ||||    
T  30739863 tctattttacagggatcattatatcatgaaggtttgggacctgtttcttggtggcaatgaattcattcccagcttttattcattttcaagattacgctt 30739961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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