View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_high_25 (Length: 512)
Name: NF0812_high_25
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 98 - 505
Target Start/End: Complemental strand, 8797202 - 8796798
Alignment:
| Q |
98 |
cttctatcatgcttcaaaataaccatcaaaacactcctggtttaggttactatttcatggacaacatcaacaaccatggaagctcttcttcctcttcttc |
197 |
Q |
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| T |
8797202 |
cttctatcatgcttcaaaataaccatcaaaacactcctggtttaggttactatttcatggacaacatcaacaaccatggaagctcttcttcctcttcttc |
8797103 |
T |
|
| Q |
198 |
ttctgtcaaatccaagatcatggctcatcctcactatcaccgtctcttggaagcctacatcaactgtcaaaaggtcagaacnnnnnnnnngaagataatt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8797102 |
ttctgtcaaatccaagatcatggctcatcctcactatcaccgtctcttggaagcctacatcaactgtcaaaaggtcagaa---aaaaaaagaagataatt |
8797006 |
T |
|
| Q |
298 |
attttgaaaacgatgtgtgtgtaattaatttctttgtacnnnnnnngtttgacaagtttggatctgatgagctgtgttgtataattgtactttgaaactg |
397 |
Q |
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| T |
8797005 |
attttgaaaacgatgtgtgtgtaattaatttctttgtactttttttgtttgacaagtttggatctgatgagctgtgttgtataattgtactttgaaactg |
8796906 |
T |
|
| Q |
398 |
tggccttttgttttcatttccatttattactaatattgacaaactatcatgtatattattgtaagtcaaaacccttttaagcatagatgataaagacact |
497 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8796905 |
tggccttttgttttcatttccatttattactaatattgacaaactatcatgtatattattgtaagtcaaaacccttttaagcatatgtgataaagacact |
8796806 |
T |
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| Q |
498 |
tcatctca |
505 |
Q |
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| T |
8796805 |
tcatctca |
8796798 |
T |
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