View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0812_high_26 (Length: 511)
Name: NF0812_high_26
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_high_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 98 - 504
Target Start/End: Complemental strand, 8797202 - 8796798
Alignment:
| Q |
98 |
cttctatcatgcttcaaaataaccatcaaaacactcctggtttaggttactatttcatggacaacatcaacaaccatggaagctcttcttcctcttcttc |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8797202 |
cttctatcatgcttcaaaataaccatcaaaacactcctggtttaggttactatttcatggacaacatcaacaaccatggaagctcttcttcctcttcttc |
8797103 |
T |
|
| Q |
198 |
ttctgtcaaatccaagatcatggctcatcctcactatcaccgtctcttggaagcctacatcaactgtcaaaaggtcagaacnnnnnnnngaagataatta |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8797102 |
ttctgtcaaatccaagatcatggctcatcctcactatcaccgtctcttggaagcctacatcaactgtcaaaaggtcagaa--aaaaaaagaagataatta |
8797005 |
T |
|
| Q |
298 |
ttttgaaaacgatgtgtgtgtaattaatttctttgtacnnnnnnngtttgacaagtttggatctgatgagctgtgttgtataattgtactttgaaactgt |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8797004 |
ttttgaaaacgatgtgtgtgtaattaatttctttgtactttttttgtttgacaagtttggatctgatgagctgtgttgtataattgtactttgaaactgt |
8796905 |
T |
|
| Q |
398 |
ggccttttgttttcatttccatttattactaatattgacaaactatcatgtatattattgtaagtcaaaacccttttaagcatagatgataaagacactt |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8796904 |
ggccttttgttttcatttccatttattactaatattgacaaactatcatgtatattattgtaagtcaaaacccttttaagcatatgtgataaagacactt |
8796805 |
T |
|
| Q |
498 |
catctca |
504 |
Q |
| |
|
||||||| |
|
|
| T |
8796804 |
catctca |
8796798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5017 times since January 2019
Visitors: 5753