View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0812_high_28 (Length: 486)
Name: NF0812_high_28
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_high_28 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 12 - 352
Target Start/End: Original strand, 18324530 - 18324870
Alignment:
| Q |
12 |
acagagagggtaaggattgagacaaacctgtttagtgccgccttggccatctggtagagggtggcttgaacagatgggctatagaccccttcctttggag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18324530 |
acagagagggtaaggattgagacaaacctgtttaatgctgccttcgccatctggtagagggtggcttgaactgatgggctatagaccccttcctttggag |
18324629 |
T |
|
| Q |
112 |
agccaaaaaatgtgtcaagcaaaactcttttcacatccaggtacttttctgtaaaataaagaggcttcttggggacgctatataacgattcatatgaata |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18324630 |
agccaaaaaatgtgtcaagcaaaactcttttcacatccaggtacttttctgtaaaataaagaggcttcttggggacgctatataacgattcatatgaata |
18324729 |
T |
|
| Q |
212 |
cctacaaccgcattcaatttagaagaatgaattctattctactagttaaatagaacacatgtccaatgatttccttagttggaggatgtgctacaaattt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18324730 |
cctacaaccgcattcaatttagaagaatgaattctattctactagttaaatagaacacatgtacaatgatttccttagttggaggatgtgctacaaattt |
18324829 |
T |
|
| Q |
312 |
ccaccaaataatgaatgaaaagaaaattttctagaaattgt |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18324830 |
ccaccaaataatgaatgaaaagaaaattttctagaaattgt |
18324870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 349 - 472
Target Start/End: Original strand, 45047814 - 45047937
Alignment:
| Q |
349 |
ttgtgtgcaatttctcgagcttaatcaaagacgaattgaatgaagcccgtatgaatcttagtagacaatattctcatgaatattggccacccaaaattct |
448 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||| |
|
|
| T |
45047814 |
ttgtttgcaatttctcgagcttgatcaaagacgaattgaatgaagcccgtatgaatcttagtaggcaatattctaatgaatattggccagccaaaattct |
45047913 |
T |
|
| Q |
449 |
agccactatgacacttttggattc |
472 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
45047914 |
atccactatgacacttttggattc |
45047937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 6172 times since January 2019
Visitors: 5762