View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_high_31 (Length: 456)
Name: NF0812_high_31
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 336
Target Start/End: Original strand, 4721166 - 4721488
Alignment:
| Q |
14 |
atataagtgtgactcagcatcatgatcaaggtacaatctcattcacccatattttgcacacaatccacctctcgcacatacagacttgagggtgcacaat |
113 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4721166 |
atataagtgtgactcaacatcatgatcaaagtacaatctcattcacccattttttgcacacaatccacctctcgcacatacagacttgagggtgcacaat |
4721265 |
T |
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| Q |
114 |
tctcctctactacggaagctgcttagcactgcgaaccaccgcaatagcagtcatcctcaccagagaaccaccagcatgtttcttcaatcttcaacgaaca |
213 |
Q |
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||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4721266 |
tctcctctactactgaagctgcttagcactgtgaaccactgcaatagcagtcatcctcaccagagaaccaccagcatgtttcttcaatcttcaactaaca |
4721365 |
T |
|
| Q |
214 |
aatcaaaagtaaatgtcgaataataaaatggcacaacatgagaagatccagattaaagagtatgcaccatgacgacaaatggaatatcatggcgataacc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4721366 |
aatcaaaagtaaatgtcgaataataaaatggcacaacatgagaagatccagattaaagagtatgcaccatgacgacaaatggaatatcatggcgataacc |
4721465 |
T |
|
| Q |
314 |
caacataaccacctaccaaattc |
336 |
Q |
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|||||||| ||||||||| |||| |
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| T |
4721466 |
caacataaacacctaccatattc |
4721488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 10597478 - 10597406
Alignment:
| Q |
14 |
atataagtgtgactcagcatcatgatcaaggtacaatctcattcacccatattttgcacacaatccacctctc |
86 |
Q |
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| T |
10597478 |
atataagcgtgactcagcgtcacgctcaaggtacactttcattcacccaaatttcgcacacaatccacctctc |
10597406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 21923728 - 21923668
Alignment:
| Q |
41 |
aaggtacaatctcattcacccatattttgcacacaatccacctctcgcacatacagacttga |
102 |
Q |
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| T |
21923728 |
aaggtacaatctgattcacccat-ttttgcaaacaatccacctctttcatataccgacttga |
21923668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 5678015 - 5678075
Alignment:
| Q |
22 |
gtgactcagcatcatgatcaaggtacaatctcattcaccca-tattttgcacacaatccac |
81 |
Q |
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|||||||||| ||| |||||||||||||||||||||| | | ||||||||||||||||| |
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|
| T |
5678015 |
gtgactcagcgtcacagtcaaggtacaatctcattcaccaatttttttgcacacaatccac |
5678075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 5703067 - 5703127
Alignment:
| Q |
22 |
gtgactcagcatcatgatcaaggtacaatctcattcaccca-tattttgcacacaatccac |
81 |
Q |
| |
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|||||||||| ||| |||||||||||||||||||||| | | ||||||||||||||||| |
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| T |
5703067 |
gtgactcagcgtcacagtcaaggtacaatctcattcaccaatttttttgcacacaatccac |
5703127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 30808587 - 30808676
Alignment:
| Q |
14 |
atataagtgtgactcagcatcatgatcaaggtacaatctcattcacccatattttgcacacaatccacctctcgcacatacagacttgag |
103 |
Q |
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||||||| ||||||||||||| | ||||| |||| | | ||||||||| ||| |||||||||||||||| ||||||| |||||||| |
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| T |
30808587 |
atataagcatgactcagcatcacgctcaagatacacttttattcacccagttttcacacacaatccacctctttcacataccgacttgag |
30808676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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