View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0812_high_34 (Length: 448)

Name: NF0812_high_34
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0812_high_34
NF0812_high_34
[»] chr3 (15 HSPs)
chr3 (16-420)||(14075385-14075794)
chr3 (75-235)||(14150966-14151122)
chr3 (18-180)||(5703299-5703461)
chr3 (18-168)||(6021286-6021436)
chr3 (18-168)||(6005056-6005206)
chr3 (18-165)||(6014952-6015099)
chr3 (22-168)||(2901701-2901847)
chr3 (18-180)||(5749448-5749610)
chr3 (18-180)||(5786407-5786569)
chr3 (23-180)||(5642903-5643060)
chr3 (23-180)||(5682768-5682925)
chr3 (23-180)||(5673267-5673424)
chr3 (32-168)||(2894344-2894480)
chr3 (29-167)||(2893395-2893534)
chr3 (308-348)||(14150852-14150892)
[»] chr7 (4 HSPs)
chr7 (18-312)||(1121743-1122033)
chr7 (18-312)||(9984047-9984337)
chr7 (22-312)||(7959852-7960138)
chr7 (308-417)||(36010440-36010549)
[»] chr2 (1 HSPs)
chr2 (18-312)||(31400910-31401200)
[»] chr6 (4 HSPs)
chr6 (18-312)||(16213933-16214223)
chr6 (18-312)||(16216586-16216876)
chr6 (18-185)||(16228531-16228697)
chr6 (248-312)||(16219400-16219464)


Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 420
Target Start/End: Complemental strand, 14075794 - 14075385
Alignment:
Q  16 ataatcaagctcgggaaccccaatagccattctaattccctttgagttgtctgccctaggtacaaaatattctcgaatctcatcaaccatcccggcctca 115  Q
    ||||||||  || |||||||||||  || ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||    
T  14075794 ataatcaatttcaggaaccccaattacccttctaattccctttgagttgtctgccccagatacaaaatattctcgaatctcatcaaccatcccgacctca 14075695  T
Q  116 accatttcatcaactcttttgcctatatattgaaatagagtaggcaaagacacatctatccaaatg-----aaaagnnnnnnnntcgtattttgaaagaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||         ||||||||||||||||    
T  14075694 accatttcatcaactcttttgcctatatattgaaatagagtaggcaaagacacatctatccaaatggaaaaaaaaataaaaaaatcgtattttgaaagaa 14075595  T
Q  211 atgcaatggctgggtccttaattaannnnnnnaaataagaattggactctcttatagtaataggtagatgtccattgccatttatgagatctagggcttc 310  Q
    ||||||||||||| |||||||||||       |||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14075594 atgcaatggctggatccttaattaattttttaaaataagaattgaaccctcttatagtaataggtagatgtcctttgccatttatgagatctagggcttc 14075495  T
Q  311 aaacaaaaagtatacaaaagtgcaataaatccaatacaacaatttcaactttcaataccatgtaggttatttaatatcacaaatactgttttgtttcaag 410  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14075494 aaacaaaaagtatacaaaagtacaataaatccaatacaacaatttcaactttcaataccatgtaggttatttaatatcacaaatactgtttagtttcaag 14075395  T
Q  411 ggttgcaggt 420  Q
    ||||||||||    
T  14075394 ggttgcaggt 14075385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 75 - 235
Target Start/End: Complemental strand, 14151122 - 14150966
Alignment:
Q  75 gtacaaaatattctcgaatctcatcaaccatcccggcctcaaccatttcatcaactcttttgcctatatattgaaatagagtaggcaaagacacatctat 174  Q
    |||||||||||||| |||||||||  ||||||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||     
T  14151122 gtacaaaatattcttgaatctcatttaccatccctagctcaaccatttcatcaactcttttgcctacatattgaaatagagtaggcaaatacacatctag 14151023  T
Q  175 ccaaatgaaaagnnnnnnnntcgtattttgaaagaaatgcaatggctgggtccttaattaa 235  Q
     ||||||||||         || |||||||||||||||||||||||||| |||| ||||||    
T  14151022 tcaaatgaaaa----aataatcatattttgaaagaaatgcaatggctggatcctcaattaa 14150966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 5703461 - 5703299
Alignment:
Q  18 aatcaagctcgggaaccccaatagccattctaattccctttgagttgtctgccctaggtacaaaatattctcgaatctcatcaaccatcccggcctcaac 117  Q
    |||| ||||| ||||||||||| ||| |||||||||| |||| ||| ||||| | |||||||||| | ||||  |||||||| ||||||||  || ||||    
T  5703461 aatcgagctcaggaaccccaattgcccttctaattccttttgtgttatctgctccaggtacaaaaaagtctcttatctcatctaccatccctaccgcaac 5703362  T
Q  118 catttcatcaactcttttgcctatatattgaaatagagtaggcaaagacacatctatccaaat 180  Q
    ||||||||||||||||||| | | |||| |||| ||| |||||||||||||||||| ||||||    
T  5703361 catttcatcaactcttttgtccaaatatggaaacagaataggcaaagacacatctagccaaat 5703299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 6021286 - 6021436
Alignment:
Q  18 aatcaagctcgggaaccccaatagccattctaattccctttgagttgtctgccctaggtacaaaatattctcgaatctcatcaaccatcccggcctcaac 117  Q
    |||||||||| ||||||||||||||| |||||||||| |||| ||||||||| | |||||||||| ||||||  |||||||| |||||||| || |||||    
T  6021286 aatcaagctctggaaccccaatagcccttctaattccttttgtgttgtctgctccaggtacaaaaaattctcttatctcatctaccatccctgcttcaac 6021385  T
Q  118 catttcatcaactcttttgcctatatattgaaatagagtaggcaaagacac 168  Q
    ||| ||||| ||||||||| | | |||| |||| ||| |||||| ||||||    
T  6021386 catctcatccactcttttgtccaaatatggaaagagaataggcagagacac 6021436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 6005056 - 6005206
Alignment:
Q  18 aatcaagctcgggaaccccaatagccattctaattccctttgagttgtctgccctaggtacaaaatattctcgaatctcatcaaccatcccggcctcaac 117  Q
    |||||||||| || ||||| |||||| |||||||||| |||| ||||||||| | ||| |||||| ||||||  |||||||| |||||||| ||| ||||    
T  6005056 aatcaagctctggcaccccgatagcccttctaattccttttgtgttgtctgctccaggcacaaaaaattctcttatctcatctaccatccctgccccaac 6005155  T
Q  118 catttcatcaactcttttgcctatatattgaaatagagtaggcaaagacac 168  Q
    ||| ||||||||||||||| | | |||| |||| ||| |||||||||||||    
T  6005156 catctcatcaactcttttgtccaaatatggaaacagaataggcaaagacac 6005206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 6014952 - 6015099
Alignment:
Q  18 aatcaagctcgggaaccccaatagccattctaattccctttgagttgtctgccctaggtacaaaatattctcgaatctcatcaaccatcccggcctcaac 117  Q
    |||||||||| || ||||| |||||| |||||||||| |||| ||||||||| | ||| |||||| ||||||  |||||||| |||||||| ||| ||||    
T  6014952 aatcaagctctggcaccccgatagcccttctaattccttttgtgttgtctgctccaggcacaaaaaattctcttatctcatctaccatccctgccccaac 6015051  T
Q  118 catttcatcaactcttttgcctatatattgaaatagagtaggcaaaga 165  Q
    ||| ||||||||||||||| | | |||| |||| ||| ||||||||||    
T  6015052 catctcatcaactcttttgtccaaatatggaaacagaataggcaaaga 6015099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 22 - 168
Target Start/End: Complemental strand, 2901847 - 2901701
Alignment:
Q  22 aagctcgggaaccccaatagccattctaattccctttgagttgtctgccctaggtacaaaatattctcgaatctcatcaaccatcccggcctcaaccatt 121  Q
    |||||| ||||||||||||||| |||||||||| |||| ||  ||||| | |||||||||  | ||||  |||||||| |||||||| | ||||||||||    
T  2901847 aagctcaggaaccccaatagcccttctaattccttttgtgtaatctgctccaggtacaaagaagtctcttatctcatctaccatccctgactcaaccatt 2901748  T
Q  122 tcatcaactcttttgcctatatattgaaatagagtaggcaaagacac 168  Q
    ||||||||||||||| |||  ||| || ||||| |||||||||||||    
T  2901747 tcatcaactcttttgtctaagtatggacatagaataggcaaagacac 2901701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 5749610 - 5749448
Alignment:
Q  18 aatcaagctcgggaaccccaatagccattctaattccctttgagttgtctgccctaggtacaaaatattctcgaatctcatcaaccatcccggcctcaac 117  Q
    ||||||| || | ||||||||||||| |||||||||| |||| ||| || || | |||||||||  | || |  |||||||| |||||||| |||| |||    
T  5749610 aatcaagttcagaaaccccaatagcccttctaattccttttgtgttatccgcaccaggtacaaagaaatcccttatctcatctaccatccctgcctgaac 5749511  T
Q  118 catttcatcaactcttttgcctatatattgaaatagagtaggcaaagacacatctatccaaat 180  Q
    ||||||||||||||||||| | | |||| |||| ||| |||||||||||||||||| ||||||    
T  5749510 catttcatcaactcttttgtccaaatatggaaaaagaataggcaaagacacatctaaccaaat 5749448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 5786569 - 5786407
Alignment:
Q  18 aatcaagctcgggaaccccaatagccattctaattccctttgagttgtctgccctaggtacaaaatattctcgaatctcatcaaccatcccggcctcaac 117  Q
    ||||||| || | ||||||||||||| |||||||||| |||| ||| || || | |||||||||  | || |  |||||||| |||||||| |||| |||    
T  5786569 aatcaagttcagaaaccccaatagcccttctaattccttttgtgttatccgcaccaggtacaaagaaatcccttatctcatctaccatccctgcctgaac 5786470  T
Q  118 catttcatcaactcttttgcctatatattgaaatagagtaggcaaagacacatctatccaaat 180  Q
    ||||||||||||||||||| | | |||| |||| ||| |||||||||||||||||| ||||||    
T  5786469 catttcatcaactcttttgtccaaatatggaaaaagaataggcaaagacacatctaaccaaat 5786407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 180
Target Start/End: Complemental strand, 5643060 - 5642903
Alignment:
Q  23 agctcgggaaccccaatagccattctaattccctttgagttgtctgccctaggtacaaaatattctcgaatctcatcaaccatcccggcctcaaccattt 122  Q
    ||||| ||||||||||| ||| |||| ||||| |||| ||| ||||| | | |||||||| | ||||  |||||||| |||||||| ||| |||||||||    
T  5643060 agctcaggaaccccaattgcccttcttattccttttgtgttatctgctccaagtacaaaaaagtctcttatctcatctaccatccctgccgcaaccattt 5642961  T
Q  123 catcaactcttttgcctatatattgaaatagagtaggcaaagacacatctatccaaat 180  Q
    |||||||||||||| | | |||| |||| | | |||| ||||||||||| | ||||||    
T  5642960 catcaactcttttgtccaaatatggaaacaaaataggtaaagacacatcgagccaaat 5642903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 180
Target Start/End: Complemental strand, 5682925 - 5682768
Alignment:
Q  23 agctcgggaaccccaatagccattctaattccctttgagttgtctgccctaggtacaaaatattctcgaatctcatcaaccatcccggcctcaaccattt 122  Q
    ||||| ||||||||||| ||| |||| ||||| ||||  || ||||| | |||||||||| | ||||  |||||||| |||||||| ||| |||||||||    
T  5682925 agctcaggaaccccaattgcccttcttattccttttgtattatctgctccaggtacaaaaaagtctcttatctcatctaccatccctgccgcaaccattt 5682826  T
Q  123 catcaactcttttgcctatatattgaaatagagtaggcaaagacacatctatccaaat 180  Q
    |||||||||||||| | | |||| |||| | | |||| ||||||||||| | ||||||    
T  5682825 catcaactcttttgtccaaatatggaaacaaaataggtaaagacacatcgagccaaat 5682768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 180
Target Start/End: Complemental strand, 5673424 - 5673267
Alignment:
Q  23 agctcgggaaccccaatagccattctaattccctttgagttgtctgccctaggtacaaaatattctcgaatctcatcaaccatcccggcctcaaccattt 122  Q
    ||||| ||||||||||| ||| |||| ||||| ||||  || ||||| | |||||||||| | ||||  |||||||| |||||||| ||| |||||||||    
T  5673424 agctcaggaaccccaattgcccttcttattccttttgtattatctgctccaggtacaaaaaagtctcttatctcatctaccatccctgccgcaaccattt 5673325  T
Q  123 catcaactcttttgcctatatattgaaatagagtaggcaaagacacatctatccaaat 180  Q
    || ||||||||||| | | |||| |||| | | |||| ||||||||||| | ||||||    
T  5673324 caccaactcttttgtccaaatatggaaacaaaataggtaaagacacatcgagccaaat 5673267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 168
Target Start/End: Complemental strand, 2894480 - 2894344
Alignment:
Q  32 accccaatagccattctaattccctttgagttgtctgccctaggtacaaaatattctcgaatctcatcaaccatcccggcctcaaccatttcatcaactc 131  Q
    |||||||||| | |||||||||| |||| ||  ||||| | ||||| |||  | ||||  |||||||| |||||||| | ||||||||||||||||||||    
T  2894480 accccaatagtccttctaattccttttgtgtaatctgctccaggtataaataagtctcttatctcatctaccatccctgactcaaccatttcatcaactc 2894381  T
Q  132 ttttgcctatatattgaaatagagtaggcaaagacac 168  Q
    ||||| |||  ||| || | ||| |||||||||||||    
T  2894380 ttttgtctaagtatggacacagaataggcaaagacac 2894344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 167
Target Start/End: Complemental strand, 2893534 - 2893395
Alignment:
Q  29 ggaaccccaatagccattctaattccctttgagttgtctgccctaggtacaaaatat-tctcgaatctcatcaaccatcccggcctcaaccatttcatca 127  Q
    ||||||||||||||| |||||||||| |||  ||  ||||| | |||||||||| |  ||||  |||||||  |||||||| | ||||||||||||||||    
T  2893534 ggaaccccaatagcccttctaattccttttctgtaatctgctccaggtacaaaaaaagtctcttatctcatataccatccctgactcaaccatttcatca 2893435  T
Q  128 actcttttgcctatatattgaaatagagtaggcaaagaca 167  Q
    ||||||||| ||| |||| || || || |||| |||||||    
T  2893434 actcttttgtctaaatatagacattgaataggtaaagaca 2893395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 14150892 - 14150852
Alignment:
Q  308 ttcaaacaaaaagtatacaaaagtgcaataaatccaataca 348  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  14150892 ttcaaacaaaaagtatacaaaagttcaataaatccaataca 14150852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 1121743 - 1122033
Alignment:
Q  18 aatcaagctcgggaaccccaatagccattctaattccctttgagttgtctgccctaggtacaaaatattctcgaatctcatcaaccatcccggcctcaac 117  Q
    |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| | || |||    
T  1121743 aatcaagctcaggaaccccaatagcccttctaattccctttgtgttgtctgccccaggtacaaaatattctcgaatctcatcaatcatccctgtctgaac 1121842  T
Q  118 catttcatcaactcttttgcctatatattgaaatagagtaggcaaagacacatctatccaaatgaaaagnnnnnnnntcgtattttgaaagaaatgcaat 217  Q
    |||||||||||||||||| |||| ||||||| ||||||||||||||||||| |||| ||||||||||          || |||||||||||||||| |||    
T  1121843 catttcatcaactctttttcctacatattgatatagagtaggcaaagacacgtctacccaaatgaaa----caacattcatattttgaaagaaatgaaat 1121938  T
Q  218 ggctgggtccttaattaannnnnnnaaataagaattggactctcttatagtaataggtagatgtccattgccatttatgagatctagggcttcaa 312  Q
    ||||||||||| || |||       | ||||||||||||| ||| || | |||||||||| |||||||||||| ||||||||||||||| |||||    
T  1121939 ggctgggtcctcaactaatttttttagataagaattggaccctcctacaataataggtaggtgtccattgccaattatgagatctagggattcaa 1122033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 9984337 - 9984047
Alignment:
Q  18 aatcaagctcgggaaccccaatagccattctaattccctttgagttgtctgccctaggtacaaaatattctcgaatctcatcaaccatcccggcctcaac 117  Q
    |||| ||||| ||||||||||||||| ||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||| ||||  ||    
T  9984337 aatcgagctcaggaaccccaatagcccttctaattccctttgtgttatctgccccaggtacaaaatattctcgaatctcatcaaccatccctgcctggac 9984238  T
Q  118 catttcatcaactcttttgcctatatattgaaatagagtaggcaaagacacatctatccaaatgaaaagnnnnnnnntcgtattttgaaagaaatgcaat 217  Q
    ||||||||||||||||||||||| ||||||| | ||||||||||||||||| |||| ||||||||||          || |||||||||||||||| |||    
T  9984237 catttcatcaactcttttgcctacatattgatagagagtaggcaaagacacgtctacccaaatgaaa----caacaatcatattttgaaagaaatgaaat 9984142  T
Q  218 ggctgggtccttaattaannnnnnnaaataagaattggactctcttatagtaataggtagatgtccattgccatttatgagatctagggcttcaa 312  Q
    ||||||||||| || |||       | ||||||||||||| ||| || | |||||||||| ||||| |||||| |||| ||||||| || |||||    
T  9984141 ggctgggtcctcaactaatttttttagataagaattggaccctcctacaataataggtaggtgtcctttgccagttatcagatctaaggattcaa 9984047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 22 - 312
Target Start/End: Original strand, 7959852 - 7960138
Alignment:
Q  22 aagctcgggaaccccaatagccattctaattccctttgagttgtctgccctaggtacaaaatattctcgaatctcatcaaccatcccggcctcaaccatt 121  Q
    |||||| ||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||||    
T  7959852 aagctcaggaaccccaatagcccttctaattccctttgtgttgtccgccctaggtacaaaatattctcgaatctcatcgaccatccctgcctctaccatt 7959951  T
Q  122 tcatcaactcttttgcctatatattgaaatagagtaggcaaagacacatctatccaaatgaaaagnnnnnnnntcgtattttgaaagaaatgcaatggct 221  Q
    ||||| ||||||||||||| ||||||||| ||||||||||||||||| || |||||||||||           || |||||||||| ||||||||||| |    
T  7959952 tcatcgactcttttgcctacatattgaaacagagtaggcaaagacacgtcgatccaaatgaa----gcaacaatcatattttgaaaaaaatgcaatggat 7960047  T
Q  222 gggtccttaattaannnnnnnaaataagaattggactctcttatagtaataggtagatgtccattgccatttatgagatctagggcttcaa 312  Q
    ||||||| || |||       | ||||||||||||| ||| || | |||||||||| ||  |||||||| |||| |||||||||| |||||    
T  7960048 gggtcctcaactaattttttaagataagaattggaccctcctacaataataggtaggtgctcattgccaattatcagatctagggattcaa 7960138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 308 - 417
Target Start/End: Original strand, 36010440 - 36010549
Alignment:
Q  308 ttcaaacaaaaagtatacaaaagtgcaataaatccaatacaacaatttcaactttcaataccatgtaggttatttaatatcacaaatactgttttgtttc 407  Q
    |||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||  ||| |||||| ||||| |||||   ||||||||||||||    
T  36010440 ttcaaacaaaaagtatacaaaagttcaataaatctaatacagcaatttcaactttcaatgacatctaggttgtttaacatcaccggtactgttttgtttc 36010539  T
Q  408 aagggttgca 417  Q
    ||||| ||||    
T  36010540 aagggctgca 36010549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 31400910 - 31401200
Alignment:
Q  18 aatcaagctcgggaaccccaatagccattctaattccctttgagttgtctgccctaggtacaaaatattctcgaatctcatcaaccatcccggcctcaac 117  Q
    |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||    
T  31400910 aatcaagctcaggaaccccaatagcccttctaattccctttgtgttgtctgccccaggtacaaaatattctcgaatctcatcaaccatcccaccctcaac 31401009  T
Q  118 catttcatcaactcttttgcctatatattgaaatagagtaggcaaagacacatctatccaaatgaaaagnnnnnnnntcgtattttgaaagaaatgcaat 217  Q
    ||||||||| ||||||||||||| ||||| ||| |||||||||||||||||||||| ||| ||||||          || ||||||||||||||||||||    
T  31401010 catttcatccactcttttgcctacatatttaaacagagtaggcaaagacacatctacccagatgaaa----caacaatcatattttgaaagaaatgcaat 31401105  T
Q  218 ggctgggtccttaattaannnnnnnaaataagaattggactctcttatagtaataggtagatgtccattgccatttatgagatctagggcttcaa 312  Q
    || |||||||| || |||       | ||||||||||||| ||| || | |||||||||| |||||||||||| |||| ||||||| || |||||    
T  31401106 ggttgggtcctcaactaattttcttagataagaattggaccctcctacaataataggtaggtgtccattgccaattattagatctaaggattcaa 31401200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 16213933 - 16214223
Alignment:
Q  18 aatcaagctcgggaaccccaatagccattctaattccctttgagttgtctgccctaggtacaaaatattctcgaatctcatcaaccatcccggcctcaac 117  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||| | ||||||    
T  16213933 aatcaagctcaggaaccccaatagcccttctaattccctttgagttgtctgccccaggtgcataatattctcgaatctcatcaaccatccctgactcaac 16214032  T
Q  118 catttcatcaactcttttgcctatatattgaaatagagtaggcaaagacacatctatccaaatgaaaagnnnnnnnntcgtattttgaaagaaatgcaat 217  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||         || |||||||||||||| |||||    
T  16214033 catttcatcaactcttttccctacatattgaaatagagtaggcaaagacacatctacccaaatgaaaa----aacagtcatattttgaaagaaaagcaat 16214128  T
Q  218 ggctgggtccttaattaannnnnnnaaataagaattggactctcttatagtaataggtagatgtccattgccatttatgagatctagggcttcaa 312  Q
    || ||| || | ||  ||       | ||||||||||||| ||| || | ||||||||||  ||||||||||| |||||||||||| || |||||    
T  16214129 ggttggctcttcaaccaatttttttatataagaattggaccctcctacaataataggtaggcgtccattgccaattatgagatctatggattcaa 16214223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 16216586 - 16216876
Alignment:
Q  18 aatcaagctcgggaaccccaatagccattctaattccctttgagttgtctgccctaggtacaaaatattctcgaatctcatcaaccatcccggcctcaac 117  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||| | ||||||    
T  16216586 aatcaagctcaggaaccccaatagcccttctaattccctttgagttgtctgccccaggtgcataatattctcgaatctcatcaaccatccctgactcaac 16216685  T
Q  118 catttcatcaactcttttgcctatatattgaaatagagtaggcaaagacacatctatccaaatgaaaagnnnnnnnntcgtattttgaaagaaatgcaat 217  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||         || |||||||||||||| |||||    
T  16216686 catttcatcaactcttttccctacatattgaaatagagtaggcaaagacacatctacccaaatgaaaa----aacagtcatattttgaaagaaaagcaat 16216781  T
Q  218 ggctgggtccttaattaannnnnnnaaataagaattggactctcttatagtaataggtagatgtccattgccatttatgagatctagggcttcaa 312  Q
    || ||| || | ||  ||       | ||||||||||||| ||| || | ||||||||||  ||||||||||| |||||||||||| || |||||    
T  16216782 ggttggctcttcaaccaatttttttatataagaattggaccctcctacaataataggtaggcgtccattgccaattatgagatctatggattcaa 16216876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 16228531 - 16228697
Alignment:
Q  18 aatcaagctcgggaaccccaatagccattctaattccctttgagttgtctgccctaggtacaaaatattctcgaatctcatcaaccatcccggcctcaac 117  Q
    |||||||||| |||||| |||||||| ||||||||||||| ||||||||||||| |||| || ||||||||||||||||||||||||| || | ||||||    
T  16228531 aatcaagctcaggaaccgcaatagcccttctaattcccttcgagttgtctgccc-aggtgcataatattctcgaatctcatcaaccatacctgactcaac 16228629  T
Q  118 catttcatcaactcttttgcctatatattgaaatagagtaggcaaagacacatctatccaaatgaaaa 185  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||    
T  16228630 catttcatcaactcttttccctacatattgaaatagagtaggcaaagacacatctacccaaatgaaaa 16228697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 312
Target Start/End: Original strand, 16219400 - 16219464
Alignment:
Q  248 agaattggactctcttatagtaataggtagatgtccattgccatttatgagatctagggcttcaa 312  Q
    |||||||||| ||| || | ||||||||||  ||||||||||| |||||||||||| || |||||    
T  16219400 agaattggaccctcctacaataataggtaggcgtccattgccaattatgagatctatggattcaa 16219464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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