View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_high_38 (Length: 443)
Name: NF0812_high_38
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 29 - 430
Target Start/End: Complemental strand, 43867139 - 43866738
Alignment:
| Q |
29 |
tgatatactaaaaatagtaacaaaatgagaaactataagtccaagttccatatcatccggagctaaacccataaatataatggcctccaatccaaggaca |
128 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43867139 |
tgatatactattaatagtaacaaaatgagaaactataagtccaagttccatatcatccggagctaaacccataaatataatggcctccaatccaaggaca |
43867040 |
T |
|
| Q |
129 |
aggatttacacatcaattaatattttgattagcctgagagatcatctccaccaaatccaactccttcttaacttcaacctctttctccaattgatgctca |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43867039 |
aggatttacacatcaattaatattttgattagcctgagagatcatctccaccaaatccaactccttcttaacttcaacctctttctccaattgatgctca |
43866940 |
T |
|
| Q |
229 |
tcaagattaacaacttgcatgccttccttatcacattctttttcatccatagtaggaacacttgacatatcatctagcagagaatcaataccacaccctt |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43866939 |
tcaagattaacaacttgcatgccttccttatcacattctttttcatccatagtaggaacacttgacatatcatctagcagagaatcaataccacaccctt |
43866840 |
T |
|
| Q |
329 |
cttcaaacaaattatcatccaaagaaaaatcattgaactcatagtttggcaccgagcggtcattaggaaaaaattgatttgcaatatgtggctgaggaat |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43866839 |
cttcaaacaaattatcatccaaagaaaaatcattgaactcatagtttggcaccgagcggtcattaggaaaaaattgatttgcaatatgtggctgaggaat |
43866740 |
T |
|
| Q |
429 |
ct |
430 |
Q |
| |
|
|| |
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|
| T |
43866739 |
ct |
43866738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 347
Target Start/End: Original strand, 21549314 - 21549367
Alignment:
| Q |
294 |
catatcatctagcagagaatcaataccacacccttcttcaaacaaattatcatc |
347 |
Q |
| |
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|||||||||||||||||||||||||| |||||| |||| ||||||||||||||| |
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| T |
21549314 |
catatcatctagcagagaatcaatactacacccatcttgaaacaaattatcatc |
21549367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 359
Target Start/End: Complemental strand, 34917188 - 34917123
Alignment:
| Q |
294 |
catatcatctagcagagaatcaataccacacccttcttcaaacaaattatcatccaaagaaaaatc |
359 |
Q |
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|||||||||||| ||||||||||||| |||||| | || ||||||||| ||||| ||||||||||| |
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| T |
34917188 |
catatcatctagtagagaatcaatactacacccattttgaaacaaattctcatcgaaagaaaaatc |
34917123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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