View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_high_40 (Length: 436)
Name: NF0812_high_40
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_high_40 |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 30 - 426
Target Start/End: Complemental strand, 1904216 - 1903810
Alignment:
| Q |
30 |
gtgggatctttgtatatttgcttcctaatgtttcatttcaagcaaa--------------aaattcaattaaccataccttccaacatgaagagtatcac |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
1904216 |
gtgggatctttgtatatttgcttcctaatgtttcatttcaagcaaagaatcaaaagcaaaaaattcaaataaccataccttccaacatgaagagtatcac |
1904117 |
T |
|
| Q |
116 |
caaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgttacatagactgccccctttaaccgaacagaccaggcacaaac |
215 |
Q |
| |
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||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1904116 |
caaggaatataacacccaagccagcagaaataacaatttgaagtggcttgaatgaggttacatagactgccccctttaaccgaacagaccaggcacaaac |
1904017 |
T |
|
| Q |
216 |
tgtattgcctatcaactttccgaaaattgcctggggtgagaaatgtgtcatcaataaattacgattacgaggtgtaaattgtttagaaatgatagatatt |
315 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||| |||||| |
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| T |
1904016 |
tgtattgcctatcaactttccgaaaattgcctggggtgagaaatttgtcatcaataaattacgattacgaggtgcaaactgtttagaaat----gatatt |
1903921 |
T |
|
| Q |
316 |
tcaacacaaaattgatatcaaaaatcaacaaccactaagatgacacacaatccaaataagtgcttaattacgtccagtgactgatttgtcaagtgtcaca |
415 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1903920 |
tcaacacaaaattgatatcaaaagtcaacaaccaccaagatgacacacaattcaaataagtgtttaattacgtccagtgactgatttgtcaagtgtcaca |
1903821 |
T |
|
| Q |
416 |
actcattcatc |
426 |
Q |
| |
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||||||||||| |
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| T |
1903820 |
actcattcatc |
1903810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 30 - 426
Target Start/End: Complemental strand, 1908449 - 1908043
Alignment:
| Q |
30 |
gtgggatctttgtatatttgcttcctaatgtttcatttcaagcaaa--------------aaattcaattaaccataccttccaacatgaagagtatcac |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
1908449 |
gtgggatctttgtatatttgcttcctaatgtttcatttcaagcaaagaatcaaaagcaaaaaattcaaataaccataccttccaacatgaagagtatcac |
1908350 |
T |
|
| Q |
116 |
caaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgttacatagactgccccctttaaccgaacagaccaggcacaaac |
215 |
Q |
| |
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||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1908349 |
caaggaatataacacccaagccagcagaaataacaatttgaagtggcttgaatgaggttacatagactgccccctttaaccgaacagaccaggcacaaac |
1908250 |
T |
|
| Q |
216 |
tgtattgcctatcaactttccgaaaattgcctggggtgagaaatgtgtcatcaataaattacgattacgaggtgtaaattgtttagaaatgatagatatt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||| |||||| |
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| T |
1908249 |
tgtattgcctatcaactttccgaaaattgcctggggtgagaaatttgtcatcaataaattacgattacgaggtgcaaactgtttagaaat----gatatt |
1908154 |
T |
|
| Q |
316 |
tcaacacaaaattgatatcaaaaatcaacaaccactaagatgacacacaatccaaataagtgcttaattacgtccagtgactgatttgtcaagtgtcaca |
415 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1908153 |
tcaacacaaaattgatatcaaaagtcaacaaccaccaagatgacacacaattcaaataagtgtttaattacgtccagtgactgatttgtcaagtgtcaca |
1908054 |
T |
|
| Q |
416 |
actcattcatc |
426 |
Q |
| |
|
||||||||||| |
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|
| T |
1908053 |
actcattcatc |
1908043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 74 - 247
Target Start/End: Complemental strand, 1898953 - 1898780
Alignment:
| Q |
74 |
aaaaattcaattaaccataccttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgt |
173 |
Q |
| |
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||||||| |||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1898953 |
aaaaattgaatttactataccttccaacatgaagagtatcaccaagaaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgaggt |
1898854 |
T |
|
| Q |
174 |
tacatagactgccccctttaaccgaacagaccaggcacaaactgtattgcctatcaactttccgaaaattgcct |
247 |
Q |
| |
|
||||||||||||||||||||| ||||| | ||| |||||||||| | ||||||| |||||||| ||||| |||| |
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|
| T |
1898853 |
tacatagactgccccctttaagcgaactgtccaagcacaaactgcaatgcctataaactttccaaaaatagcct |
1898780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 74 - 243
Target Start/End: Complemental strand, 1888391 - 1888222
Alignment:
| Q |
74 |
aaaaattcaattaaccataccttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgt |
173 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| ||| || |||||||||||||||| ||||||||||||||||| |
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| T |
1888391 |
aaaaattgaattaactataccttccaacatgaagagtatcaccaaggaatataacactcaaggcaacagaaataacaatttggagtggcttgaatgatgt |
1888292 |
T |
|
| Q |
174 |
tacatagactgccccctttaaccgaacagaccaggcacaaactgtattgcctatcaactttccgaaaatt |
243 |
Q |
| |
|
||||||||| || |||||||| || | ||||| ||| ||||| |||| ||||| || ||||| |||||| |
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|
| T |
1888291 |
tacatagacagctccctttaaacgcattgaccatgcataaactatattccctattaattttcccaaaatt |
1888222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 76 - 191
Target Start/End: Complemental strand, 1893239 - 1893124
Alignment:
| Q |
76 |
aaattcaattaaccataccttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgtta |
175 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||| ||||||||||||| ||||| ||||||||| |||||||||||||||| || ||||||||||| |||| |
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| T |
1893239 |
aaattaaattaaccataccttccaatatgaagaatatcaccaaggaatataactcctaagccaacagaaataacaatttgtagaggcttgaatgaggtta |
1893140 |
T |
|
| Q |
176 |
catagactgccccctt |
191 |
Q |
| |
|
||||||| |||||||| |
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|
| T |
1893139 |
catagacagccccctt |
1893124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 75 - 194
Target Start/End: Complemental strand, 1881090 - 1880971
Alignment:
| Q |
75 |
aaaattcaattaaccataccttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgtt |
174 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||| |||||| | ||| || |||||| |||||||| |||||||||||||||||| |
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|
| T |
1881090 |
aaaattgaataaaccataccttccaacatgaagagtatcaccaaggaatataacagccaaggcaacagaaaacacaatttggagtggcttgaatgatgtt |
1880991 |
T |
|
| Q |
175 |
acatagactgccccctttaa |
194 |
Q |
| |
|
|||||||| || |||||||| |
|
|
| T |
1880990 |
acatagacagctccctttaa |
1880971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 75 - 194
Target Start/End: Complemental strand, 1914270 - 1914151
Alignment:
| Q |
75 |
aaaattcaattaaccataccttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgtt |
174 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||| ||||| || || | | |||| ||||||||||| |||||||||||||| ||| |
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|
| T |
1914270 |
aaaattgaattaaccataccttccaagatgaagagtatcaccaaggaatataactcccaaccaaacagagataacaatttgcagtggcttgaatgaggtt |
1914171 |
T |
|
| Q |
175 |
acatagactgccccctttaa |
194 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
1914170 |
acatagacagccccctttaa |
1914151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 412
Target Start/End: Complemental strand, 1898657 - 1898605
Alignment:
| Q |
360 |
acacaatccaaataagtgcttaattacgtccagtgactgatttgtcaagtgtc |
412 |
Q |
| |
|
||||||| |||||| |||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
1898657 |
acacaattcaaatatgtgcttaattacgtcccgtgactgatttatcaagtgtc |
1898605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 1919239 - 1919164
Alignment:
| Q |
92 |
accttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaa |
167 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| || ||| | || ||| |||||||||| |||||||||||| |
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|
| T |
1919239 |
accttccaatatgaagagtatcaccaaggaacaaaatacccatagcaacagcaataacaattgaaagtggcttgaa |
1919164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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