View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_high_41 (Length: 432)
Name: NF0812_high_41
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_high_41 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 15 - 336
Target Start/End: Original strand, 40893313 - 40893634
Alignment:
| Q |
15 |
tattaaaaactccttcaaagttaactccattaatcattttaatccaaaaggtttaacatcagttaagtgtgatgatttgtcttgtaactttgctgatgtg |
114 |
Q |
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| T |
40893313 |
tattaaaaactccttcaaagttaactccattaatcattttaatccaaaaggttaaatatcagttaagtgtgatgatttgtcttgtaactttactgacgtg |
40893412 |
T |
|
| Q |
115 |
gcatctgactataaatattataatgattgattggatttttcctttgacaacttggcttttattttaattgacatttatttagaaaataaaatatcataaa |
214 |
Q |
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| T |
40893413 |
gcatctgactagaaatattataatgattgattggatttttcctttgacaacttggcttttattttaattgacatttatttagaaaataaaatatcataaa |
40893512 |
T |
|
| Q |
215 |
acatcaaaaattcataagttctaggtaacttattaaacccagaatcaaaactcaaaagtcaacactatcttctcaaataacctaaatcttcacaacctct |
314 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40893513 |
acatcaaaaattcataagttataggtaacctattaaacccaaaatcaaaactcaaaagtcaccactatcttctcaaataacctaaatcttcacaacctct |
40893612 |
T |
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| Q |
315 |
caaatgtagaatccatgacttt |
336 |
Q |
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|||| |||||||||||||||| |
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| T |
40893613 |
caaacatagaatccatgacttt |
40893634 |
T |
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