View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0812_high_46 (Length: 407)

Name: NF0812_high_46
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0812_high_46
NF0812_high_46
[»] chr8 (3 HSPs)
chr8 (31-394)||(23951858-23952225)
chr8 (263-394)||(24120983-24121113)
chr8 (302-378)||(32240028-32240104)
[»] chr5 (3 HSPs)
chr5 (257-394)||(17381261-17381398)
chr5 (255-396)||(25681258-25681399)
chr5 (302-349)||(18451534-18451581)
[»] chr7 (6 HSPs)
chr7 (256-378)||(23073039-23073160)
chr7 (271-375)||(20050256-20050360)
chr7 (262-380)||(20470046-20470164)
chr7 (279-385)||(3400572-3400677)
chr7 (262-347)||(23126847-23126933)
chr7 (306-373)||(21545135-21545202)
[»] chr2 (3 HSPs)
chr2 (255-397)||(9504633-9504774)
chr2 (255-396)||(9515999-9516139)
chr2 (255-388)||(21503842-21503975)
[»] chr3 (4 HSPs)
chr3 (255-394)||(16976959-16977096)
chr3 (277-379)||(25918556-25918657)
chr3 (261-364)||(13912019-13912122)
chr3 (255-345)||(19263192-19263282)
[»] chr1 (4 HSPs)
chr1 (255-349)||(18300341-18300436)
chr1 (302-382)||(34521648-34521728)
chr1 (306-385)||(11984487-11984565)
chr1 (302-349)||(34534527-34534573)
[»] chr6 (2 HSPs)
chr6 (252-394)||(17859737-17859879)
chr6 (256-349)||(16528356-16528449)
[»] chr4 (1 HSPs)
chr4 (310-394)||(23437054-23437138)
[»] scaffold0022 (1 HSPs)
scaffold0022 (256-385)||(68803-68931)


Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 31 - 394
Target Start/End: Complemental strand, 23952225 - 23951858
Alignment:
Q  31 tgttagtgatctaacttatactttataaggaatatgtttaatctgaatatcaatgtaannnnnnnnnc----caatataattgataaatatcatttgaaa 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||              ||||||||||||||||||||||||||||    
T  23952225 tgttagtgatctaacttatactttataaggaatatgtttaatctggctatcaatgtaattttatttttttttcaatataattgataaatatcatttgaaa 23952126  T
Q  127 cttacacacaattataaggtttatagatttcgaccaagataaaactatatagcttacaatatcaacattatcaattgatatatagatcttatgaacatca 226  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23952125 cttacacacaattgtaaggtttatagatttcgaccaagataaaactatatagtttacaatatcaacattatcaattgatatatagatcttatgaacatca 23952026  T
Q  227 atgtgaagattttgttgatatataatatgttatgtttttcttgcgtccaatttaatttgtacttgcatgttcctgatgctttttcaatcaagaatccgta 326  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  23952025 atgtgaagattttgttgatatataatatgttatgtttctcttgtgtccaatttaatttgtacttgcatgttcttgatgttttttcaatcgagaatccgta 23951926  T
Q  327 tcggtaatcttgaaaattgatccatagtagattagtagaattgacaacccgaatttctttctccgttc 394  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  23951925 tcggtaatcttgaaaattgatccatagtagattagtaggatagacaacccgaatttctttctccgttc 23951858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 263 - 394
Target Start/End: Original strand, 24120983 - 24121113
Alignment:
Q  263 tttcttgcgtccaatttaatttgtacttgcatgttcctgatgctttttcaatcaagaatccgtatcggtaatcttgaaaattgatccatagtagattagt 362  Q
    ||||||| |||  ||||||||||||||||||||||| | ||| |||||||||  |||||| |||||| |||| || ||||||||||| ||||  ||||||    
T  24120983 tttcttgtgtcagatttaatttgtacttgcatgttcttaatgttttttcaattgagaatctgtatcgataat-ttaaaaattgatccgtagtttattagt 24121081  T
Q  363 agaattgacaacccgaatttctttctccgttc 394  Q
    || ||||| ||||| |  ||||||||| ||||    
T  24121082 aggattgaaaacccaatattctttctctgttc 24121113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 378
Target Start/End: Original strand, 32240028 - 32240104
Alignment:
Q  302 atgctttttcaatcaagaatccgtatcggtaatcttgaaaattgatccatagtagattagtagaattgacaacccga 378  Q
    ||||||||| |||  |||||||||||| ||||||||||||||||||  ||||   |||||||| |||||||||||||    
T  32240028 atgcttttttaattgagaatccgtatcagtaatcttgaaaattgatatatagagaattagtaggattgacaacccga 32240104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 257 - 394
Target Start/End: Complemental strand, 17381398 - 17381261
Alignment:
Q  257 tatgtttttcttgcgtccaatttaatttgtacttgcatgttcctgatgctttttcaatcaagaatccgtatcggtaatcttgaaaattgatccatagtag 356  Q
    |||| |||||||| |||  ||||||||||||||||||||||| | ||| |||||||||  ||||| ||||| ||||| ||||||||||||||| ||||||    
T  17381398 tatgcttttcttgtgtctgatttaatttgtacttgcatgttcttaatgttttttcaattgagaattcgtattggtaaacttgaaaattgatccgtagtag 17381299  T
Q  357 attagtagaattgacaacccgaatttctttctccgttc 394  Q
    | || ||| |||||||||||||| ||||||||||||||    
T  17381298 actaataggattgacaacccgaaattctttctccgttc 17381261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 255 - 396
Target Start/End: Original strand, 25681258 - 25681399
Alignment:
Q  255 gttatgtttttcttgcgtccaatttaatttgtacttgcatgttcctgatgctttttcaatcaagaatccgtatcggtaatcttgaaaattgatccatagt 354  Q
    |||||| |||||||| || | |||| |||||||||||  ||||| | ||| | |||||||  |||||| |||||||||||||| |||||||| | || |     
T  25681258 gttatgcttttcttgtgttcgattttatttgtacttgtctgttcttaatgttgtttcaattgagaatctgtatcggtaatcttaaaaattgaacaattga 25681357  T
Q  355 agattagtagaattgacaacccgaatttctttctccgttcat 396  Q
    |||||||||| |||||||||| ||| ||||||||||||||||    
T  25681358 agattagtaggattgacaacctgaagttctttctccgttcat 25681399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 349
Target Start/End: Complemental strand, 18451581 - 18451534
Alignment:
Q  302 atgctttttcaatcaagaatccgtatcggtaatcttgaaaattgatcc 349  Q
    ||||||||||||| |||||| ||||||  |||||||||||||||||||    
T  18451581 atgctttttcaattaagaattcgtatcaataatcttgaaaattgatcc 18451534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 256 - 378
Target Start/End: Original strand, 23073039 - 23073160
Alignment:
Q  256 ttatgtttttcttgcgtccaatttaatttgtacttgcatgttcctgatgctttttcaatcaagaatccgtatcggtaatcttgaaaattgatccatagta 355  Q
    |||||||||||||| |||| |||||||| |  ||||||||| | | |||||||||||||  ||||||| ||||||||||||||||||||||| | || ||    
T  23073039 ttatgtttttcttgtgtccgatttaattcgctcttgcatgtgcttaatgctttttcaattgagaatccttatcggtaatcttgaaaattgatac-taata 23073137  T
Q  356 gattagtagaattgacaacccga 378  Q
    ||||||||| |||||||||||||    
T  23073138 gattagtaggattgacaacccga 23073160  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 271 - 375
Target Start/End: Complemental strand, 20050360 - 20050256
Alignment:
Q  271 gtccaatttaatttgtacttgcatgttcctgatgctttttcaatcaagaatccgtatcggtaatcttgaaaattgatccatagtagattagtagaattga 370  Q
    |||| ||||||||||||||||  ||||| | ||  |||||||||  | |||| |||| ||||||||||||||||||| ||||| |||||||||  |||||    
T  20050360 gtccgatttaatttgtacttgtctgttcgtaattatttttcaattgaaaatctgtataggtaatcttgaaaattgattcatagaagattagtatgattga 20050261  T
Q  371 caacc 375  Q
    |||||    
T  20050260 caacc 20050256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 380
Target Start/End: Complemental strand, 20470164 - 20470046
Alignment:
Q  262 ttttcttgcgtccaatttaatttgtacttgcatgttcctgatgctttttcaatcaagaatccgtatcggtaatcttgaaaattgatccatagtagattag 361  Q
    |||||||| || | |||||||| || ||||| ||| | | ||||||||||||   |||||||||||||||||||||||||||||||   |||   |||||    
T  20470164 ttttcttgtgttcgatttaattcgttcttgcttgtgcttaatgctttttcaactgagaatccgtatcggtaatcttgaaaattgatatgtagagaattag 20470065  T
Q  362 tagaattgacaacccgaat 380  Q
    | | |||||||||||||||    
T  20470064 ttggattgacaacccgaat 20470046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 385
Target Start/End: Original strand, 3400572 - 3400677
Alignment:
Q  279 taatttgtacttgcatgttcctgatgctttttcaatcaagaatccgtatcggtaatcttgaaaattgatccatagtagattagtagaattgacaacccga 378  Q
    |||||||| ||||||||| | | | |||||||| ||  ||||||| ||| ||||||||||||||||||||| || || |||||||  ||||||||| |||    
T  3400572 taatttgttcttgcatgtgcttaacgctttttcgattgagaatccatattggtaatcttgaaaattgatccgta-tatattagtaagattgacaactcga 3400670  T
Q  379 atttctt 385  Q
    | |||||    
T  3400671 aattctt 3400677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 347
Target Start/End: Original strand, 23126847 - 23126933
Alignment:
Q  262 ttttcttgcgtccaatttaattt-gtacttgcatgttcctgatgctttttcaatcaagaatccgtatcggtaatcttgaaaattgat 347  Q
    |||||||| ||||||||||| || |||||||  ||||| | |||||||||||||  | |||||| |||| |||||||||||||||||    
T  23126847 ttttcttgtgtccaatttaaattcgtacttgtttgttcttaatgctttttcaattgaaaatccgcatcgctaatcttgaaaattgat 23126933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 373
Target Start/End: Complemental strand, 21545202 - 21545135
Alignment:
Q  306 tttttcaatcaagaatccgtatcggtaatcttgaaaattgatccatagtag-attagtagaattgacaa 373  Q
    ||||||||| ||||||  ||  ||||||||||||||||||||||||| ||| |||||||| ||||||||    
T  21545202 tttttcaattaagaatttgttccggtaatcttgaaaattgatccata-tagaattagtaggattgacaa 21545135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 255 - 397
Target Start/End: Original strand, 9504633 - 9504774
Alignment:
Q  255 gttatgtttttcttgcgtccaatttaatttgtacttgcatgttcctgatgctttttcaatcaagaatccgtatcggtaatcttgaaaattgatccatagt 354  Q
    ||||||||||||||| |||| |||||||||||  |||||||| | | |||||||||||||  ||||||||| ||||||||||| ||||||| |   || |    
T  9504633 gttatgtttttcttgtgtccgatttaatttgtttttgcatgtacttaatgctttttcaattgagaatccgtgtcggtaatctttaaaattggtttgta-t 9504731  T
Q  355 agattagtagaattgacaacccgaatttctttctccgttcata 397  Q
    |||||||||  ||||||||||| || |||||  ||||||||||    
T  9504732 agattagtaagattgacaaccctaaattcttcttccgttcata 9504774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 396
Target Start/End: Original strand, 9515999 - 9516139
Alignment:
Q  255 gttatgtttttcttgcgtccaatttaatttgtacttgcatgttcctgatgctttttcaatcaagaatccgtatcggtaatcttgaaaattgatccatagt 354  Q
    ||||||||||||||| |||| |||||||||||  |||||||| | | |||||||||||||  ||||||||| ||||||||||| ||||||| |   || |    
T  9515999 gttatgtttttcttgtgtccgatttaatttgtttttgcatgtacttaatgctttttcaattgagaatccgtgtcggtaatctttaaaattggtttgta-t 9516097  T
Q  355 agattagtagaattgacaacccgaatttctttctccgttcat 396  Q
    |||||||||  ||||||||||| || |||||  |||||||||    
T  9516098 agattagtaagattgacaaccctaaattcttcttccgttcat 9516139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 255 - 388
Target Start/End: Complemental strand, 21503975 - 21503842
Alignment:
Q  255 gttatgtttttcttgcgtccaatttaatttgtacttgcatgttcctgatgctttttcaatcaagaatccgtatcggtaatcttgaaaattgatccatagt 354  Q
    |||||| |||||||| |||| ||||||||||||||||  || || | ||| | ||||||   ||||||  |||  |||||||||||||||||||| ||||    
T  21503975 gttatgcttttcttgtgtccgatttaatttgtacttgtctgatcttaatgatgtttcaactgagaatctatattagtaatcttgaaaattgatccgtagt 21503876  T
Q  355 agattagtagaattgacaacccgaatttctttct 388  Q
    |||||||||| ||| ||||||| || ||||||||    
T  21503875 agattagtaggattaacaacccaaaattctttct 21503842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 255 - 394
Target Start/End: Original strand, 16976959 - 16977096
Alignment:
Q  255 gttatgtttttcttgcgtccaatttaatttgtacttgcatgttcctgatgctttttcaatcaagaatccgtatcggtaatcttgaaaattgatccatagt 354  Q
    ||||||||||||||| |||  ||||||||||||||||  ||||| | || ||||||||||  ||||||  |||||| ||||| |||||||||||  ||||    
T  16976959 gttatgtttttcttgtgtcttatttaatttgtacttgtctgttcataattctttttcaattgagaatc--tatcggaaatctggaaaattgatctgtagt 16977056  T
Q  355 agattagtagaattgacaacccgaatttctttctccgttc 394  Q
    |||||||||| ||| ||||||| |  ||||||| ||||||    
T  16977057 agattagtagtatttacaacccaagattctttccccgttc 16977096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 379
Target Start/End: Complemental strand, 25918657 - 25918556
Alignment:
Q  277 tttaatttgtacttgcatgttcctgatgctttttcaatcaagaatccgtatcggtaatcttgaaaattgatccatagtagattagtagaattgacaaccc 376  Q
    ||||||| || ||||| ||| | | |||||||||||||  ||||||||||||||||||||||||||||||||| || ||||||||| | || ||||||||    
T  25918657 tttaattcgttcttgcctgtgcttaatgctttttcaattgagaatccgtatcggtaatcttgaaaattgatccgta-tagattagtcggatagacaaccc 25918559  T
Q  377 gaa 379  Q
    |||    
T  25918558 gaa 25918556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 261 - 364
Target Start/End: Original strand, 13912019 - 13912122
Alignment:
Q  261 tttttcttgcgtccaatttaatttgtacttgcatgttcctgatgctttttcaatcaagaatccgtatcggtaatcttgaaaattgatccatagtagatta 360  Q
    ||||| ||| ||||||||||||||||||| |  ||||  | ||| |||||||||  |||||||||||||| ||||| |||||||||||  ||| ||||||    
T  13912019 ttttttttgtgtccaatttaatttgtactagtctgtttttaatggtttttcaatttagaatccgtatcgggaatctcgaaaattgatctgtagaagatta 13912118  T
Q  361 gtag 364  Q
    ||||    
T  13912119 gtag 13912122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 345
Target Start/End: Complemental strand, 19263282 - 19263192
Alignment:
Q  255 gttatgtttttcttgcgtccaatttaatttgtacttgcatgttcctgatgctttttcaatcaagaatccgtatcggtaatcttgaaaattg 345  Q
    |||||| |||||||| |||| |||||||| || ||||  ||| | | |||||||||||||| ||||||||||||||||||| | |||||||    
T  19263282 gttatgcttttcttgtgtccgatttaattcgttcttgtctgtgcttaatgctttttcaatcgagaatccgtatcggtaatcataaaaattg 19263192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 255 - 349
Target Start/End: Complemental strand, 18300436 - 18300341
Alignment:
Q  255 gttatgtttttcttgcgtccaatttaattt-gtacttgcatgttcctgatgctttttcaatcaagaatccgtatcggtaatcttgaaaattgatcc 349  Q
    ||||||||||||||| ||||||||||| || ||||||| |||||| | |||||||||||||  |||||| | |||| |||||||||||||||||||    
T  18300436 gttatgtttttcttgggtccaatttaaattcgtacttgtatgttcttaatgctttttcaatttagaatctgcatcgataatcttgaaaattgatcc 18300341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 382
Target Start/End: Original strand, 34521648 - 34521728
Alignment:
Q  302 atgctttttcaatcaagaatccgtatcggtaatcttgaaaattgatccatagtagattagtagaattgacaacccgaattt 382  Q
    ||||||||||||   ||||||||||||| ||||||||||||||||||| ||   || |||| | |||||||| ||||||||    
T  34521648 atgctttttcaagtgagaatccgtatcgataatcttgaaaattgatccgtataggaatagtgggattgacaaaccgaattt 34521728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 385
Target Start/End: Complemental strand, 11984565 - 11984487
Alignment:
Q  306 tttttcaatcaagaatccgtatcggtaatcttgaaaattgatccatagtagattagtagaattgacaacccgaatttctt 385  Q
    |||||||||  | ||| ||||||| ||||||||||||||| ||  || ||||||||||| |||||||||||||| |||||    
T  11984565 tttttcaattgaaaattcgtatcgataatcttgaaaattggtctgta-tagattagtaggattgacaacccgaaattctt 11984487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 349
Target Start/End: Original strand, 34534527 - 34534573
Alignment:
Q  302 atgctttttcaatcaagaatccgtatcggtaatcttgaaaattgatcc 349  Q
    ||||||||||||  |||||||||||| |||||||||||||||||||||    
T  34534527 atgctttttcaactaagaatccgtat-ggtaatcttgaaaattgatcc 34534573  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 252 - 394
Target Start/End: Complemental strand, 17859879 - 17859737
Alignment:
Q  252 tatgttatgtttttcttgcgtccaatttaatttgtacttgcatgttcctgatgctttttcaatcaagaatccgtatcggtaatcttgaaaattgatccat 351  Q
    |||||| || |||||||| |||| ||||||||||||||||  ||||    ||| |||||||||  |||||| | |||||||||||||||||||| |||||    
T  17859879 tatgttttgcttttcttgtgtccgatttaatttgtacttgtttgttttgaatgatttttcaattgagaatctgcatcggtaatcttgaaaattgttccat 17859780  T
Q  352 agtagattagtagaattgacaacccgaatttctttctccgttc 394  Q
       |||||||||| |||||||||| | | |||||||| |||||    
T  17859779 gaaagattagtaggattgacaacctggagttctttcttcgttc 17859737  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 349
Target Start/End: Original strand, 16528356 - 16528449
Alignment:
Q  256 ttatgtttttcttgcgtccaatttaatttgtacttgcatgttcctgatgctttttcaatcaagaatccgtatcggtaatcttgaaaattgatcc 349  Q
    |||||||||||||| |||  ||||||||||| ||||| ||| | | ||| |||||||||    ||||| ||||||||| |||||||||||||||    
T  16528356 ttatgtttttcttgtgtctgatttaatttgttcttgcctgtgcttaatggtttttcaattggtaatccatatcggtaaccttgaaaattgatcc 16528449  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 394
Target Start/End: Original strand, 23437054 - 23437138
Alignment:
Q  310 tcaatcaagaatccgtatcggtaatcttgaaaattgatccatagtagattagtagaattgacaacccgaatttctttctccgttc 394  Q
    ||||| ||||||  |||||| ||||||||||||||||||| ||||| |||||||  ||||||||||| || ||||||||||||||    
T  23437054 tcaattaagaatttgtatcgataatcttgaaaattgatccgtagtatattagtaagattgacaacccaaaattctttctccgttc 23437138  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 385
Target Start/End: Complemental strand, 68931 - 68803
Alignment:
Q  256 ttatgtttttcttgcgtccaatttaatttgtacttgcatgttcctgatgctttttcaatcaagaatccgtatcggtaatcttgaaaattgatccatagta 355  Q
    ||||| |||||||| |||| |||||||| || ||||  | | | | |||| ||||||||  |||||| |||||||| ||| ||||||||||||  || ||    
T  68931 ttatgattttcttgtgtccgatttaattcgttcttgtctatgcttaatgccttttcaattgagaatctgtatcggtgatcgtgaaaattgatctgta-ta 68833  T
Q  356 gattagtagaattgacaacccgaatttctt 385  Q
    | ||||||| |||||||||| | |||||||    
T  68832 ggttagtaggattgacaacctggatttctt 68803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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