View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0812_high_48 (Length: 402)

Name: NF0812_high_48
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0812_high_48
NF0812_high_48
[»] chr6 (4 HSPs)
chr6 (127-373)||(14700521-14700767)
chr6 (127-373)||(14694108-14694354)
chr6 (13-71)||(14694409-14694467)
chr6 (20-64)||(14700829-14700873)


Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 127 - 373
Target Start/End: Complemental strand, 14700767 - 14700521
Alignment:
Q  127 gttgaaaaaactccattggcctttgatatgtttcaaatgtgacattaactcagccataataaattaactcaggcgtgtgtgattttgctctttatgtact 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||    
T  14700767 gttgaaaaaactccattggcctttgatatgtttcaaatgtgacattaactcagccataataaattaactcaggcgtgtgtatttttgctctttatgtgct 14700668  T
Q  227 agtggtggaagtttcccggaggttttatgtgagtgtgtggtggccagatggttttgaagatggttttcatagataattggggagagaatcaacttgtttc 326  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||| || |||||||||||||||||||    
T  14700667 agtggtggaagttttccggaggttttatatgagtgtgtggtggccagacggttttgaagatgcttttcatagataataggagagagaatcaacttgtttc 14700568  T
Q  327 aattttttattacgtgtcttgtttttgttggttgtgactatagatga 373  Q
    ||||||||||||| ||||||||||||||||||||| |||| ||||||    
T  14700567 aattttttattacttgtcttgtttttgttggttgtcactaaagatga 14700521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 127 - 373
Target Start/End: Complemental strand, 14694354 - 14694108
Alignment:
Q  127 gttgaaaaaactccattggcctttgatatgtttcaaatgtgacattaactcagccataataaattaactcaggcgtgtgtgattttgctctttatgtact 226  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||| |||| |||||||||| |     
T  14694354 gttgaaaaaacttcattggcctttgatatgtttcaaacgtgacattaactcaaccataataaattaactcaggcatgtgtgttttttctctttatgtgca 14694255  T
Q  227 agtggtggaagtttcccggaggttttatgtgagtgtgtggtggccagatggttttgaagatggttttcatagataattggggagagaatcaacttg-ttt 325  Q
    ||||||||| |||||||| ||||||| ||||| ||||||||||||||| ||||||||||||| |||||||||||||| || ||||||||||||||| |||    
T  14694254 agtggtggatgtttcccgaaggttttctgtga-tgtgtggtggccagacggttttgaagatgattttcatagataataggagagagaatcaacttgtttt 14694156  T
Q  326 caattttttattacgtgtcttgtttttgttggttgtgactatagatga 373  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||    
T  14694155 caatttttgattacgtgtcttgtttttgttggttgtgactaaagatga 14694108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 14694467 - 14694409
Alignment:
Q  13 aatatagtctgtgatgtcaaaattgcccaaattattgctgctcaagcatgaaaaattcc 71  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  14694467 aatatagtctgtgatgtcaaaattgcccaaatcattgctgctcaagcatgaataattcc 14694409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 14700873 - 14700829
Alignment:
Q  20 tctgtgatgtcaaaattgcccaaattattgctgctcaagcatgaa 64  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  14700873 tctgtgatgtcaaaattgcccaaatcattgctgctcaagcatgaa 14700829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 5998 times since January 2019
Visitors: 5761