View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_high_5 (Length: 664)
Name: NF0812_high_5
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 6e-76; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 388 - 556
Target Start/End: Original strand, 49752096 - 49752264
Alignment:
| Q |
388 |
ctatatgcaagcacaagatacaatgcacaccgtcggccaaaataccaataagggaaagacaatgacagaagataacgaaatagtgataaaattgttacat |
487 |
Q |
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| T |
49752096 |
ctatatccaagcacaagatacaatgcacaccgtcggccaaaataccaataagggaaagacaatgacataagataacgaaatagtgataaaattgttacat |
49752195 |
T |
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| Q |
488 |
atcactgtcaaaaaacaaaatttcattttctgaagggaagaaacaagatttctattattttaatttcct |
556 |
Q |
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| T |
49752196 |
atcactatcaaaaaacaaaatttctttttttgaagggaagaaacaagatttctattatttgaatttcct |
49752264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 49751716 - 49751878
Alignment:
| Q |
11 |
ttatacttataataaccggtggaaacatttgttgccttgtatggatgtgtacttgtaatttttgtttcttggttggtgcttttacgggcaccatgacatt |
110 |
Q |
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| T |
49751716 |
ttatacttataataaccggtggaaacttttgttgccttgtatggatgtgtacttgtaatttttgtttcttggttggtgctcttaggggcaccatgacatt |
49751815 |
T |
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| Q |
111 |
ctaattttgtaaatttttggcggtgtttcttctttgcgcatcttgtgcgagggaaaacacctt |
173 |
Q |
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| T |
49751816 |
gtaattttgtaaatttttggcggtgtttcttctttgcgcatcttgtacgagggaaaacacctt |
49751878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 220 - 344
Target Start/End: Original strand, 49751928 - 49752052
Alignment:
| Q |
220 |
catgaactatttgtgtaaacaaaaatattgaaataggaagnnnnnnnnnnnnagcaaaaatatcgaaataggaagtttataaagtgtaaaaacattttaa |
319 |
Q |
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| T |
49751928 |
catgaactatttgtgtaaacaaaaatattgacataggaaatttttttttttgagcaaaaatatcgaaataggaagtttataaagtgtaaaaacattttaa |
49752027 |
T |
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| Q |
320 |
tcaattagtctattcttacgttttc |
344 |
Q |
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| T |
49752028 |
tcaattagtctattcttacgttttc |
49752052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 548 - 627
Target Start/End: Original strand, 49753012 - 49753091
Alignment:
| Q |
548 |
taatttccttgcttatgtaaacacttcccgatctaaaattccaatcgaatctagagcataataaaaaatcaattatctac |
627 |
Q |
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| T |
49753012 |
taatttccttgcttatgtaaacactttccgatctaaaattccaatcgaatctagagcataataaaaaatcaaatatctac |
49753091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 170
Target Start/End: Complemental strand, 8233937 - 8233816
Alignment:
| Q |
46 |
cttgtatggatgtgtacttgtaatttttgtttcttggttggtgcttttacgggcaccatgacattctaattttgtaaatttttggcggtgtttcttcttt |
145 |
Q |
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| T |
8233937 |
cttgtatgcgtgtgttcttgtaatttt-gtttcttggttggcccttcaaagggcaatctgacactgtaattttataacttt--ggtggtgtttctttttt |
8233841 |
T |
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| Q |
146 |
gcgcatcttgtgcgagggaaaacac |
170 |
Q |
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| T |
8233840 |
gcgcatcttgtgcgattgaaaacac |
8233816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 41514363 - 41514410
Alignment:
| Q |
112 |
taattttgtaaatttttggcggtgtttcttctttgcgcatcttgtgcga |
160 |
Q |
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| T |
41514363 |
taattttgtaaatttt-ggtggtgtttcctctttgcgcatcttatgcga |
41514410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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