View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0812_high_72 (Length: 343)
Name: NF0812_high_72
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_high_72 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 314
Target Start/End: Complemental strand, 48870068 - 48869763
Alignment:
| Q |
9 |
agcagagaagaagcctcgagttgtttggtccaatgacttacaccgcaagtttcttgctgttgttaatgaattaggcattgaaagtatgttctttcgtctg |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48870068 |
agcacagaagaagcctcgagttgtttggtccaatgacttacaccgcaagtttcttgctgttgttaatgaattaggcattgaaagtacgttctttcgtctg |
48869969 |
T |
|
| Q |
109 |
tcttcaatgcgcaaaaataattgtcctcgtagcaatccaattgatatattcgtctttattttttctcattttattgagtatgtttgagtaggttatagca |
208 |
Q |
| |
|
||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48869968 |
tcttcaatgtgcaaaaatagttgtcctcatagcaatccaattgatatattcgtctttattttttctcattttattgagtatgtttgagtaggttatagca |
48869869 |
T |
|
| Q |
209 |
attcaaagttgagattaatattatgatatgaaaatgaaaattatactttgtgttatttgaaaacttcctcaaatactcttcctatgattagtctaggggt |
308 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48869868 |
attcaatgttgagattaatattatgatatgaaaatgaaaattatactttctattatttgaaaacttcctcaaatactcttcctatgattagtctaggggt |
48869769 |
T |
|
| Q |
309 |
gaatgt |
314 |
Q |
| |
|
|||||| |
|
|
| T |
48869768 |
gaatgt |
48869763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 2905126 - 2905338
Alignment:
| Q |
14 |
agaagaagcctcgagttgtttggtccaatgacttacaccgcaagtttcttgctgttgttaatgaattaggcattgaaagtatgttctttcgtctgtcttc |
113 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||| ||||||||||||| || | || ||||| |
|
|
| T |
2905126 |
agaagaagcctcgagttgtttggtcggctgacttacaccgcaagtttcttgctgctgttaaacaattaggctttgaaagtatgttgttccctcaatcttc |
2905225 |
T |
|
| Q |
114 |
aatgcgcaaaaataattgtcctcgtagcaat--ccaattgatatattcgtctttattttttctcattttattgagtatgtttgagtaggttatagcaatt |
211 |
Q |
| |
|
|||||||||||| | ||||| ||||| | | ||||| ||||||| ||||||||| ||| ||||| || || || ||||||||||||||||||||| |
|
|
| T |
2905226 |
aatgcgcaaaaacagttgtcatcgtaacttttatcaatttttatattcctctttatttgttcacatttaatcaag-atatttgagtaggttatagcaatt |
2905324 |
T |
|
| Q |
212 |
caaagttgagatta |
225 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
2905325 |
aaatgttgagatta |
2905338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 201 - 288
Target Start/End: Original strand, 2889220 - 2889307
Alignment:
| Q |
201 |
ttatagcaattcaaagttgagattaatattatgatatgaaaatgaaaattatactttgtgttatttgaaaacttcctcaaatactctt |
288 |
Q |
| |
|
|||||||||| ||| |||||||||||||| ||||||||||||| |||||| |||||||| ||||||||| ||||||||||||| |||| |
|
|
| T |
2889220 |
ttatagcaatccaatgttgagattaatatcatgatatgaaaattaaaattctactttgtattatttgaagacttcctcaaatattctt |
2889307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 2893617 - 2893728
Alignment:
| Q |
14 |
agaagaagcctcgagttgtttggtccaatgacttacaccgcaagtttcttgctgttgttaatgaattaggcattgaaagtatgttctttcgtctgtcttc |
113 |
Q |
| |
|
|||||||||||||| |||||||||| ||| ||||||||||||||| ||| || |||||| |||||||| |||| |||| |||||| | ||| ||||| |
|
|
| T |
2893617 |
agaagaagcctcgaactgtttggtccgctgatttacaccgcaagtttgttgttgcggttaatcaattaggcgttgacagtacgttcttacctctttcttc |
2893716 |
T |
|
| Q |
114 |
aatgcgcaaaaa |
125 |
Q |
| |
|
||| |||||||| |
|
|
| T |
2893717 |
aatccgcaaaaa |
2893728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 2889029 - 2889132
Alignment:
| Q |
14 |
agaagaagcctcgagttgtttggtccaatgacttacaccgcaagtttcttgctgttgttaatgaattaggcattgaaagtatgttctttcgtctgtcttc |
113 |
Q |
| |
|
|||||||||||||| ||||||||| ||| |||||| |||||||| |||||| ||||||| |||||||| |||| |||| |||||| | ||| ||||| |
|
|
| T |
2889029 |
agaagaagcctcgaactgtttggtctgctgatttacacggcaagtttgttgctgctgttaatcaattaggcgttgacagtacgttcttccctctttcttc |
2889128 |
T |
|
| Q |
114 |
aatg |
117 |
Q |
| |
|
|||| |
|
|
| T |
2889129 |
aatg |
2889132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 290
Target Start/End: Original strand, 2893811 - 2893899
Alignment:
| Q |
201 |
ttatagcaattcaaagttgagattaatattatgatatgaaaatgaaaattatactttgtgttatttgaaaacttcctcaaatactcttcc |
290 |
Q |
| |
|
|||||||||| || || ||||||||||| |||||||| |||| |||||| |||||||| ||||||||| |||| |||||||| |||||| |
|
|
| T |
2893811 |
ttatagcaatcaaatgtcgagattaatatcatgatatgcaaataaaaattctactttgtattatttgaagactt-ctcaaatattcttcc |
2893899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 49060714 - 49060627
Alignment:
| Q |
14 |
agaagaagcctcgagttgtttggtccaatgacttacaccgcaagtttcttgctgttgttaatgaattaggcattgaaagtatgttctt |
101 |
Q |
| |
|
||||||||||||| ||||||||||| || | |||||||||||| |||||| ||||||| | ||||||||||| ||||||||||| |
|
|
| T |
49060714 |
agaagaagcctcgggttgtttggtctgtggagctgcaccgcaagtttgttgctgctgttaatcagttaggcattgacagtatgttctt |
49060627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5648 times since January 2019
Visitors: 5758