View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_high_74 (Length: 342)
Name: NF0812_high_74
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_high_74 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 30 - 333
Target Start/End: Complemental strand, 48159181 - 48158866
Alignment:
| Q |
30 |
gttaaggtccgaaaccatgacatgtgacttccactttatgggaaaatatgctaagtaatcaagttagatccacaagatttgtttattcc-atacattttg |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
48159181 |
gttaaggtccgaaaccatgacatgtgacttccactttatgggaaaatatgctaagtaatcaagttagatccacaagatttgtttattcccatacattttg |
48159082 |
T |
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| Q |
129 |
agacagagacg------------acagaattaaaatggaatggagtataggcattaagtctgtttatatacacaatttatagtcaaccactaatcaaaag |
216 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||| |
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| T |
48159081 |
agacagagacgggggtattcacgacagaattaaaatggaatggagtataggcattaagtctgtttatatacataatttataatcaaccactaataaaaag |
48158982 |
T |
|
| Q |
217 |
tccctggtattcaactcaaccaccagatgtcaaatccattaaagcttaatggaattcatttggtggtagtttctataaaatgacatttcttcataagctt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||| |
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| T |
48158981 |
tccctggtattcaactcaaccaccagatgtcaaatccattaaagcttaatggaattcatttggtggtag-ttatataaaatgacatttcttggtaagctt |
48158883 |
T |
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| Q |
317 |
acttctaaaagtataat |
333 |
Q |
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||||||||||||||||| |
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| T |
48158882 |
acttctaaaagtataat |
48158866 |
T |
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