View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0812_high_88 (Length: 314)

Name: NF0812_high_88
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0812_high_88
NF0812_high_88
[»] chr1 (13 HSPs)
chr1 (1-285)||(23663671-23663955)
chr1 (115-261)||(23702119-23702256)
chr1 (158-286)||(23720440-23720567)
chr1 (1-99)||(25095426-25095524)
chr1 (1-100)||(9023686-9023785)
chr1 (1-100)||(48999661-48999759)
chr1 (1-99)||(48596098-48596196)
chr1 (1-99)||(21906638-21906735)
chr1 (63-99)||(33048687-33048723)
chr1 (28-99)||(8737649-8737720)
chr1 (1-99)||(26465323-26465421)
chr1 (63-100)||(9371552-9371589)
chr1 (70-99)||(32175699-32175728)
[»] chr8 (6 HSPs)
chr8 (1-99)||(16729986-16730085)
chr8 (1-99)||(40971683-40971782)
chr8 (1-99)||(7263401-7263499)
chr8 (1-99)||(7972731-7972829)
chr8 (1-99)||(1981842-1981940)
chr8 (1-99)||(45117713-45117811)
[»] chr5 (8 HSPs)
chr5 (1-98)||(5578358-5578455)
chr5 (1-100)||(42879851-42879950)
chr5 (1-99)||(2677225-2677322)
chr5 (1-96)||(6769104-6769200)
chr5 (1-43)||(8805828-8805870)
chr5 (1-95)||(9409314-9409408)
chr5 (1-99)||(23963108-23963205)
chr5 (1-100)||(13382347-13382445)
[»] chr2 (9 HSPs)
chr2 (6-99)||(22575732-22575825)
chr2 (1-99)||(19686051-19686148)
chr2 (1-99)||(7444166-7444266)
chr2 (1-99)||(27861586-27861685)
chr2 (1-99)||(41302039-41302138)
chr2 (59-100)||(38565819-38565860)
chr2 (59-100)||(44313790-44313831)
chr2 (59-99)||(30387385-30387425)
chr2 (21-94)||(33014946-33015019)
[»] chr7 (7 HSPs)
chr7 (1-99)||(20394534-20394632)
chr7 (1-99)||(8389043-8389140)
chr7 (1-99)||(18667623-18667721)
chr7 (1-99)||(31072272-31072369)
chr7 (59-99)||(8113252-8113292)
chr7 (63-99)||(15678512-15678548)
chr7 (63-99)||(12383110-12383146)
[»] chr4 (10 HSPs)
chr4 (1-100)||(10094767-10094866)
chr4 (1-100)||(39480000-39480099)
chr4 (1-99)||(28803654-28803751)
chr4 (62-99)||(10142834-10142871)
chr4 (1-94)||(7413496-7413588)
chr4 (1-94)||(7459577-7459669)
chr4 (1-94)||(24610836-24610929)
chr4 (63-100)||(49243598-49243635)
chr4 (63-99)||(14032326-14032362)
chr4 (59-99)||(23935643-23935683)
[»] chr6 (8 HSPs)
chr6 (1-42)||(1132029-1132070)
chr6 (1-99)||(1603630-1603727)
chr6 (1-48)||(13758383-13758430)
chr6 (1-99)||(1423213-1423310)
chr6 (1-99)||(20990697-20990795)
chr6 (1-99)||(34043803-34043900)
chr6 (59-99)||(3228812-3228852)
chr6 (59-100)||(22011863-22011904)
[»] chr3 (9 HSPs)
chr3 (1-99)||(10993910-10994007)
chr3 (6-99)||(40145739-40145831)
chr3 (7-99)||(25071907-25071997)
chr3 (1-99)||(52448400-52448498)
chr3 (1-43)||(16876677-16876719)
chr3 (59-99)||(1418207-1418247)
chr3 (59-99)||(27941264-27941304)
chr3 (63-99)||(36641844-36641880)
chr3 (1-41)||(44662982-44663022)
[»] scaffold0093 (1 HSPs)
scaffold0093 (1-94)||(51106-51198)
[»] scaffold0311 (1 HSPs)
scaffold0311 (63-100)||(4569-4606)


Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 23663955 - 23663671
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||       |||||||| ||||| |||||||||||||||||||||||||||    
T  23663955 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttggggaccttttttcatattatgcctaaggcccgtaaaactctaggaacggccctgc 23663856  T
Q  101 gtacattgtttgattttagcacttgaaagtttcacttggtgtgcaatcttccttagtaaattactacgattgctagaatagaagatagaggagatgttag 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23663855 gtacattgtttgattttagcacttgaaagtctcacttggtgtgcaatcttccttagtaaattactacgattgctagaatagaagatagaggagatgttag 23663756  T
Q  201 ttagtgacagttagggtagttagttcatttgttagatcgtagttagattatataataaataggataacacgattgtagaaggatg 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23663755 ttagtgacagttagggtagttagttcatttgttagatcgtagttagattatataataaataggagaacacgattgtagaaggatg 23663671  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 115 - 261
Target Start/End: Original strand, 23702119 - 23702256
Alignment:
Q  115 tttagcacttgaaagtttcacttggtgtgcaatcttccttagtaaattactacgattgctagaatagaagatagaggagatgttagttagtgacagttag 214  Q
    |||||||||||||||| |||||||||||||||  || |||||||||||         ||||| ||||||||||||||||| |||||||||||||||||||    
T  23702119 tttagcacttgaaagtctcacttggtgtgcaaaatttcttagtaaatt---------gctaggatagaagatagaggagacgttagttagtgacagttag 23702209  T
Q  215 ggtagttagttcatttgttagatcgtagttagattatataataaata 261  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  23702210 ggtagttagttgatttgttagatcgtagttagattatataataaata 23702256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 158 - 286
Target Start/End: Original strand, 23720440 - 23720567
Alignment:
Q  158 aaattactacgattgctagaatagaagatagaggagatgttagttagtgacagttagggtagttagttcatttgttagatcgtagttagattatataata 257  Q
    ||||| |||||| || ||| ||||| |||| | |||| |||||||||||||| ||||||| ||||||| ||||||||||  |||||||||||||||||||    
T  23720440 aaattgctacgaatgttaggatagaggataaatgagacgttagttagtgacatttagggtggttagttgatttgttagag-gtagttagattatataata 23720538  T
Q  258 aataggataacacgattgtagaaggatgt 286  Q
    ||||||| |||||||||||||||||||||    
T  23720539 aataggagaacacgattgtagaaggatgt 23720567  T

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Target: chr1; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 25095426 - 25095524
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||       |||||||| ||||| |||||||||||||||||||| |||||    
T  25095426 aaaagcacaacagtgagctaaaaagaattatgatgtattatgttagggaccttctttcatattatgcctaaggcccgtaaaactctaggaacgaccctg 25095524  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 9023686 - 9023785
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctgc 100  Q
    |||| ||||||||||||||||||| |||||||||||||||||| ||||  |       |||||||| |||||  ||||||||||||||||||||| ||||    
T  9023686 aaaaacacaacaatgagctaaaaaaaattatgatgtattatgtaaggggtcctttctcatattatgcctaaggtccgtaaaactctaggaacggcactgc 9023785  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 48999661 - 48999759
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctgc 100  Q
    |||| ||||||||||||||||||| |||||||||| ||||||| |||| ||       |||||||| ||||| ||||||||||||||||||||| |||||    
T  48999661 aaaaacacaacaatgagctaaaaa-aattatgatgcattatgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacgggcctgc 48999759  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 48596196 - 48596098
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| |||||||||||| |||||| |||||||||| ||||| | |||| ||       |||||||| ||||||||||||||||||||||| ||| ||||    
T  48596196 aaaaacacaacaatgagataaaaaaaattatgatgcattatataagggccctttttctatattatgcctaagacccgtaaaactctaggaccgggcctg 48596098  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 21906638 - 21906735
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| ||||||||||||||||||| |||||||||| ||||||| |||| ||       |||||||| ||||| ||| ||||| ||||||||||| ||||    
T  21906638 aaaaacacaacaatgagctaaaaa-aattatgatgcattatgtaagggcccttttttcatattatgcctaaggcccataaaattctaggaacggacctg 21906735  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 33048723 - 33048687
Alignment:
Q  63 tatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| ||||||||||||||||||||||||||||||||    
T  33048723 tatgcctaagacccgtaaaactctaggaacggccctg 33048687  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 8737720 - 8737649
Alignment:
Q  28 ttatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||||||||||||||| |||| ||       |||||||| ||||| ||||||||||||||| ||||||||||    
T  8737720 ttatgatgtattatgtaagggcccttttttcatattatgcctaaggcccgtaaaactctagaaacggccctg 8737649  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 26465323 - 26465421
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnn-atattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| ||||||||||||||||||| |||||||||| ||||||| | || ||        |||||||| ||||| ||||||||||||||||||||| ||||    
T  26465323 aaaaacacaacaatgagctaaaaa-aattatgatgcattatgtaaaggccctttttttcatattatgcctaaggcccgtaaaactctaggaacgggcctg 26465421  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 9371589 - 9371552
Alignment:
Q  63 tatggctaagacccgtaaaactctaggaacggccctgc 100  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  9371589 tatgcctaagacccgtaaaactttaggaacggccctgc 9371552  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 99
Target Start/End: Complemental strand, 32175728 - 32175699
Alignment:
Q  70 aagacccgtaaaactctaggaacggccctg 99  Q
    ||||||||||||||||||||||||||||||    
T  32175728 aagacccgtaaaactctaggaacggccctg 32175699  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 16729986 - 16730085
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggacc-nnnnnnnatattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||        |||||||| ||||| |||||||||||||||||||| |||||    
T  16729986 aaaagcacaacaatgagctaaaaagaattatgatgtattatgtaagggacctttttttcatattatgcctaaggcccgtaaaactctaggaacgaccctg 16730085  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 40971683 - 40971782
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttaggga-ccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| ||||||||||||||||||| |||||| ||||||||||| ||||| ||       |||||||| ||||| |||||||||  |||||||||||||||    
T  40971683 aaaaacacaacaatgagctaaaaaaaattataatgtattatgtaagggacccttttttcatattatgcctaaggcccgtaaaatgctaggaacggccctg 40971782  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 7263499 - 7263401
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| ||||||||||| ||||||| |||||| ||||||||||| |||| ||       ||||||||  |||| |||||||||| |||||||||||||||    
T  7263499 aaaaacacaacaatgacctaaaaaaaattataatgtattatgtaagggccctatttttatattatgcataaggcccgtaaaacgctaggaacggccctg 7263401  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 7972829 - 7972731
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| |||||||||||| |||||| ||||||||| |||||||| |||  ||       |||||||| ||||| ||| ||||||||||||||||||||||    
T  7972829 aaaaacacaacaatgagttaaaaaaaattatgatctattatgtaaggacccttttttcatattatgcctaaggcccataaaactctaggaacggccctg 7972731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 1981842 - 1981940
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| |||||||||||| |||||| |||||||||| ||||| | |||  ||       |||||||| ||||| ||||||||||||||||||||| ||||    
T  1981842 aaaaacacaacaatgagataaaaaaaattatgatgcattatataaggacccttttttcatattatgtctaaggcccgtaaaactctaggaacgggcctg 1981940  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 45117713 - 45117811
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnn-atattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| ||||||||||||||||||| |||||||||| ||||||| |||| |         |||||||| ||||| ||||||||||||||||||||| ||||    
T  45117713 aaaaacacaacaatgagctaaaaa-aattatgatgcattatgtaagggccatttttttcatattatgcctaaggcccgtaaaactctaggaacgggcctg 45117811  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 5578455 - 5578358
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccct 98  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||        ||||||||  |||| |||||||||||||||||||||||||    
T  5578455 aaaagcactacaatgagctaaaaagaattatgatgtattatgtaagggactttttttcatattatgcttaaggcccgtaaaactctaggaacggccct 5578358  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 42879851 - 42879950
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctgc 100  Q
    |||| ||||||||||||||||||| ||||||||| |||||||| |||| ||       |||||||| ||||| |||||||||||||||||||||||||||    
T  42879851 aaaaacacaacaatgagctaaaaaaaattatgatctattatgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacggccctgc 42879950  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 2677225 - 2677322
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| |||||||||||| |||||| |||||||||| ||||||| |||| ||       |||||||| ||||| ||||||||||||||||||||| ||||    
T  2677225 aaaaacacaacaatgagataaaaa-aattatgatgcattatgtaagggccctttttttatattatgcctaaggcccgtaaaactctaggaacgggcctg 2677322  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 6769200 - 6769104
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgtta-gggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggcc 96  Q
    |||| ||||||||||||||||||| |||||||||||||||| | | ||||||       ||||||||  |||| || ||||||||||||||||||||    
T  6769200 aaaatcacaacaatgagctaaaaaaaattatgatgtattatctaaggggaccttttctcatattatgcttaaggcctgtaaaactctaggaacggcc 6769104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 8805870 - 8805828
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgt 43  Q
    |||| ||||||||||||||||||| ||||||||||||||||||    
T  8805870 aaaaacacaacaatgagctaaaaaaaattatgatgtattatgt 8805828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 9409408 - 9409314
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggc 95  Q
    |||| ||||||||| ||||||||| ||||||||| |||||||| | |  ||       |||||||| ||||||||| ||||||||||||||||||    
T  9409408 aaaaacacaacaataagctaaaaaaaattatgatctattatgtaatgacccttttttcatattatgcctaagacccataaaactctaggaacggc 9409314  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 23963108 - 23963205
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| ||||||||||||||||||| |||||||||| ||||||| |||| ||       |||||||| ||||| ||  ||||||||||||||||| ||||    
T  23963108 aaaaacacaacaatgagctaaaaa-aattatgatgcattatgtaagggcccttttttcatattatgcctaaggcctataaaactctaggaacgggcctg 23963205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 13382445 - 13382347
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctgc 100  Q
    |||| ||||||| ||||||||||| |||||||||  ||||||| |||| ||       |||||||| ||||| || |||||||||||||||||| |||||    
T  13382445 aaaaacacaacattgagctaaaaa-aattatgatccattatgtaagggcccttttttcatattatgcctaaggcctgtaaaactctaggaacgggcctgc 13382347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 22575825 - 22575732
Alignment:
Q  6 cacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    ||||||||||||||||||| ||||||||| |||||||| |||| ||       |||||||| ||||| ||||||||||||||||||||||||||    
T  22575825 cacaacaatgagctaaaaaaaattatgatctattatgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacggccctg 22575732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 19686051 - 19686148
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| ||||||||||||||||||| |||||||||| ||||||| |||| ||       |||||||| ||||| ||||||||||||||||||||| ||||    
T  19686051 aaaaacacaacaatgagctaaaaa-aattatgatgcattatgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacgggcctg 19686148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 7444166 - 7444266
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaa--ttatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccct 98  Q
    |||| ||||||||||||| |||||  |  |||||||||||||||| |||| ||       |||||||| |||||||||||||||||||||||||||||||    
T  7444166 aaaaacacaacaatgagcaaaaaaataatttatgatgtattatgtaagggcccttttttcatattatgcctaagacccgtaaaactctaggaacggccct 7444265  T
Q  99 g 99  Q
    |    
T  7444266 g 7444266  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 27861685 - 27861586
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaatt-atgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| ||||||||||| | ||||| |||| |||||||||| ||| |||| ||       |||||||| ||||| ||||||||||||||||||||||||||    
T  27861685 aaaaacacaacaatgaccaaaaaaaaatttatgatgtattttgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacggccctg 27861586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 41302138 - 41302039
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnn-atattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| |||||||||| |||||||||| |||||| ||||||| | |||| ||        |||||||| ||||| ||||||||||||||||||||||||||    
T  41302138 aaaatcacaacaatgcgctaaaaagatttatgacgtattatataaggggcccttttctcatattatgcctaaggcccgtaaaactctaggaacggccctg 41302039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 38565860 - 38565819
Alignment:
Q  59 atattatggctaagacccgtaaaactctaggaacggccctgc 100  Q
    |||||||| |||||||||||||||||||||||| | ||||||    
T  38565860 atattatgcctaagacccgtaaaactctaggaatgaccctgc 38565819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 44313831 - 44313790
Alignment:
Q  59 atattatggctaagacccgtaaaactctaggaacggccctgc 100  Q
    |||||||| ||||| ||||||||||||||||||||| |||||    
T  44313831 atattatgtctaaggcccgtaaaactctaggaacgggcctgc 44313790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 30387385 - 30387425
Alignment:
Q  59 atattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||||||| |||||||||| ||||||||||||||| |||||    
T  30387385 atattatgcctaagacccgaaaaactctaggaacgaccctg 30387425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 33015019 - 33014946
Alignment:
Q  21 aaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacgg 94  Q
    |||| |||||||||| ||||||| |||| ||       ||||||||  ||||||||||||||||||||||||||    
T  33015019 aaaaaaattatgatgcattatgtaagggcccttttttcatattatgcataagacccgtaaaactctaggaacgg 33014946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 20394632 - 20394534
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| ||||||||||||||||||||| |||||||||||||||| |||||||       ||||||||  |||| ||||||||||| || |||||||||||    
T  20394632 aaaaacacaacaatgagctaaaaagatttatgatgtattatgtaagggacctttttttatattatgcataaggcccgtaaaactttaagaacggccctg 20394534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 8389140 - 8389043
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| |||||||||||| |||||| |||||||||| ||||||| |||| ||       |||||||| ||||| ||||||||||||||||||||| ||||    
T  8389140 aaaaacacaacaatgagataaaaa-aattatgatgcattatgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacgggcctg 8389043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 18667623 - 18667721
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| |||| |||||| ||||||| |||||| ||||||||||| || | ||       |||||||| ||||| |||||||||| |||||||||||||||    
T  18667623 aaaaacacagcaatgaactaaaaaaaattataatgtattatgtaagagccctatttttatattatgcctaaggcccgtaaaacactaggaacggccctg 18667721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 31072369 - 31072272
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| |||||||||| |||||||| |||||||||| ||||||| |||| ||       |||||||| ||||| ||| ||||||||||||||||| ||||    
T  31072369 aaaaacacaacaatgcgctaaaaa-aattatgatgcattatgtaagggcccttttttcatattatgcctaaggcccataaaactctaggaacgggcctg 31072272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 8113292 - 8113252
Alignment:
Q  59 atattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||||||| ||||||||| ||||||||||||||||||||||    
T  8113292 atattatgtctaagacccctaaaactctaggaacggccctg 8113252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 15678548 - 15678512
Alignment:
Q  63 tatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| ||||||||||||||||||||||||||||||||    
T  15678548 tatgcctaagacccgtaaaactctaggaacggccctg 15678512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 12383110 - 12383146
Alignment:
Q  63 tatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  12383110 tatgcctaaggcccgtaaaactctaggaacggccctg 12383146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 10094866 - 10094767
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctgc 100  Q
    |||| |||||||||||| |||||| |||||||||| ||||| | |||| ||       |||||||| ||||| ||||||||||||||||||||| |||||    
T  10094866 aaaaacacaacaatgagataaaaaaaattatgatgcattatataagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacgggcctgc 10094767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 39480099 - 39480000
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctgc 100  Q
    |||| ||||||||||||||||||| ||||||||| |||||||| |||  ||       |||||||| ||||| ||| |||||||||||||||| ||||||    
T  39480099 aaaaacacaacaatgagctaaaaaaaattatgatctattatgtaaggacccttttttcatattatgcctaaggcccataaaactctaggaacgaccctgc 39480000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 28803751 - 28803654
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| ||||||||||||||||||| |||||||||| ||||||| |||| |        |||||||| ||||| ||||||||||||||||||||| ||||    
T  28803751 aaaaacacaacaatgagctaaaaa-aattatgatgcattatgtaagggccattttttcatattatgcctaaggcccgtaaaactctaggaacgggcctg 28803654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 10142834 - 10142871
Alignment:
Q  62 ttatggctaagacccgtaaaactctaggaacggccctg 99  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  10142834 ttatggctaagacccctaaaactctaggaacggccctg 10142871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 7413588 - 7413496
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacgg 94  Q
    |||| ||||||||||||||||||| || ||||||| ||||||| |||| ||       ||||||||  |||| |||||||||||||||||||||    
T  7413588 aaaaacacaacaatgagctaaaaa-aactatgatgcattatgtaagggcccttttttcatattatgcgtaaggcccgtaaaactctaggaacgg 7413496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 7459669 - 7459577
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacgg 94  Q
    |||| ||||||||||||||||||| || ||||||| ||||||| |||| ||       ||||||||  |||| |||||||||||||||||||||    
T  7459669 aaaaacacaacaatgagctaaaaa-aactatgatgcattatgtaagggcccttttttcatattatgcgtaaggcccgtaaaactctaggaacgg 7459577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 24610929 - 24610836
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacgg 94  Q
    |||| ||||||||||||||||||| | ||| |||||||||||| |||| ||       |||||||| |||| ||| |||||||||| |||||||    
T  24610929 aaaaacacaacaatgagctaaaaaaagttacgatgtattatgtaagggcccttttctcatattatgcctaaaacctgtaaaactctcggaacgg 24610836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 49243598 - 49243635
Alignment:
Q  63 tatggctaagacccgtaaaactctaggaacggccctgc 100  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  49243598 tatgcctaaggcccgtaaaactctaggaacggccctgc 49243635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 14032362 - 14032326
Alignment:
Q  63 tatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  14032362 tatgcctaaggcccgtaaaactctaggaacggccctg 14032326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 23935683 - 23935643
Alignment:
Q  59 atattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||||||| ||||| ||||||||||||||||||||| ||||    
T  23935683 atattatgtctaaggcccgtaaaactctaggaacggtcctg 23935643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1132029 - 1132070
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatg 42  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  1132029 aaaaccacaacaatgagctaaaaagaattatgatgtattatg 1132070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 1603630 - 1603727
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| |||||||||||| |||||| |||||||||| ||||||| |||| ||       |||||||| ||||| ||||||||||||||||||||| ||||    
T  1603630 aaaaacacaacaatgagataaaaa-aattatgatgcattatgtaagggccctttttttatattatgcctaaggcccgtaaaactctaggaacgggcctg 1603727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 13758430 - 13758383
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttaggg 48  Q
    |||| ||||||||||||||||||| |||||||||||||||||| ||||    
T  13758430 aaaaacacaacaatgagctaaaaaaaattatgatgtattatgtaaggg 13758383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 1423213 - 1423310
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| |||||||||||| |||||  | |||||||||||||||| |||| ||       |||||||| ||||| | ||||||||||||||||||||||||    
T  1423213 aaaaacacaacaatgagttaaaattagttatgatgtattatgtaaggg-ccctttttcatattatgcctaaggctcgtaaaactctaggaacggccctg 1423310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 20990697 - 20990795
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| |||| |||||  ||||||| |||||| ||||||||||| |||| ||       |||||||| ||||| |||||||||| |||||||||||||||    
T  20990697 aaaaacacagcaatggcctaaaaaaaattataatgtattatgtaagggccctatttttatattatgcctaaggcccgtaaaacgctaggaacggccctg 20990795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 34043803 - 34043900
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| |||||||||||| |||||| |||||||||| ||||||| |||| ||       ||||||||  |||| ||||||||||||||||||||| ||||    
T  34043803 aaaaacacaacaatgagataaaaa-aattatgatgcattatgtaagggcccttttttcatattatgcgtaaggcccgtaaaactctaggaacgggcctg 34043900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 3228852 - 3228812
Alignment:
Q  59 atattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||||||  ||||||||||||||||||||||||||||||||    
T  3228852 atattatatctaagacccgtaaaactctaggaacggccctg 3228812  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 22011904 - 22011863
Alignment:
Q  59 atattatggctaagacccgtaaaactctaggaacggccctgc 100  Q
    |||||||| ||||| ||||||||||||||||||||| |||||    
T  22011904 atattatgtctaaggcccgtaaaactctaggaacgggcctgc 22011863  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 10994007 - 10993910
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| ||||||||||||||||||| |||||||||| ||||||| |||| |        |||||||| ||||| ||||||||||||||||||||| ||||    
T  10994007 aaaaacacaacaatgagctaaaaa-aattatgatgcattatgtaagggccattttttcatattatgcctaaggcccgtaaaactctaggaacgggcctg 10993910  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 40145739 - 40145831
Alignment:
Q  6 cacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||| |        |||||||| |||||||| |||||||||||||||| ||||||    
T  40145739 cacaacaatgatctaaaaaaaattatgatgtattatg-tagggccattttctcatattatgcctaagacctgtaaaactctaggaacagccctg 40145831  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 25071907 - 25071997
Alignment:
Q  7 acaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||||||||||||||||| |||||||||| ||||||| ||| |||       |||||||| ||||| ||||||||||||||||||||| ||||    
T  25071907 acaacaatgagctaaaaa-aattatgatgcattatgtaagg-accttttttcatattatgcctaaggcccgtaaaactctaggaacgggcctg 25071997  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 52448400 - 52448498
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| ||||||||||| ||||||| || ||| ||||||||||| |||| ||       |||||||| ||||| ||||||| || |||||||||||||||    
T  52448400 aaaaacacaacaatgacctaaaaaaaaatataatgtattatgtaagggccctatttttatattatgcctaaggcccgtaatacgctaggaacggccctg 52448498  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 16876719 - 16876677
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgt 43  Q
    |||| ||||||||||| ||||||| ||||||||||||||||||    
T  16876719 aaaatcacaacaatgaactaaaaaaaattatgatgtattatgt 16876677  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 1418247 - 1418207
Alignment:
Q  59 atattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||||||| ||||| || |||||||||||||||||||||||    
T  1418247 atattatgcctaaggcctgtaaaactctaggaacggccctg 1418207  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 27941304 - 27941264
Alignment:
Q  59 atattatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||||||| ||||| ||||||||||||||||||||| ||||    
T  27941304 atattatgcctaaggcccgtaaaactctaggaacgggcctg 27941264  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 36641844 - 36641880
Alignment:
Q  63 tatggctaagacccgtaaaactctaggaacggccctg 99  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  36641844 tatgcctaaggcccgtaaaactctaggaacggccctg 36641880  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 44663022 - 44662982
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattat 41  Q
    |||| ||||||||||||||||||| ||||| ||||||||||    
T  44663022 aaaatcacaacaatgagctaaaaaaaattacgatgtattat 44662982  T

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Target: scaffold0093 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 51106 - 51198
Alignment:
Q  1 aaaagcacaacaatgagctaaaaagaattatgatgtattatgttagggaccnnnnnnnatattatggctaagacccgtaaaactctaggaacgg 94  Q
    |||| ||||||||||||||||||| || ||||||| ||||||| |||| ||       |||||||| ||||| |||||||||||||||||||||    
T  51106 aaaaacacaacaatgagctaaaaa-aactatgatgcattatgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacgg 51198  T

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Target: scaffold0311 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 4606 - 4569
Alignment:
Q  63 tatggctaagacccgtaaaactctaggaacggccctgc 100  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  4606 tatgcctaaggcccgtaaaactctaggaacggccctgc 4569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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