View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_1 (Length: 868)
Name: NF0812_low_1
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 94 - 537
Target Start/End: Original strand, 44001238 - 44001682
Alignment:
| Q |
94 |
aaactaacaatactaaagtcactactagtaatgtactaaatcacaaagccagtttattcttccagcaacaagg----tatcatgattcaattagaacgag |
189 |
Q |
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| T |
44001238 |
aaactaacaatactaaagtcactactagtaatgtactaaatcacaaagccagtttattcttccagcaacaaggaaggtatcatgattcaattagaacgag |
44001337 |
T |
|
| Q |
190 |
attggtatggcttgatcaattgagtgagtgagccacttaggtgaagggacataatttcattggtggaccccatcagttgccctccaatgaacacagcagg |
289 |
Q |
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| T |
44001338 |
attggtatggcttgatcaattgagtgagtgagccacttaggtgaagggacataatttcattggtggaccccatcagttgccctccaatgaacacagcagg |
44001437 |
T |
|
| Q |
290 |
aacaggtgcagtacaacctaacctcaacaaagctttctccatttcccttccttcagggtcttgatcaatttcatgaaccataggcctaatcccaagttct |
389 |
Q |
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| T |
44001438 |
aacaggtgcagtacaacctaacctcaacaaagctttctccatttcccttccttcagggtcttgatcaatttcatgaaccataggcctaatcccaagttct |
44001537 |
T |
|
| Q |
390 |
tgaaacagaatgttaactgcatagcatagacaacatgaactctttgtgaaaatcaccacacctttttcagatgccaacctcatcactttgtccatcttga |
489 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44001538 |
tgaaacagaatgttaactgcatagcatagacaacatgaactctttgtgaaaatcaccacacctttttcagatgccaacctcatcactttgtccatct--- |
44001634 |
T |
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| Q |
490 |
tgatgatgatactgttaaaagttctagttcttgtagttgttcttctag |
537 |
Q |
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| T |
44001635 |
tgatgatgatactgttaaaagttctagttcttgtagttgttcttctag |
44001682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 584 - 862
Target Start/End: Original strand, 44001730 - 44002004
Alignment:
| Q |
584 |
gagaaagtctaagtttgagataatatttgtttagatttattaccttaattaagagttatttagaccgcccaaaccaccagatcgaatcgaaactgaattc |
683 |
Q |
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| T |
44001730 |
gagaaagtctaagtttgagataatatttgtttagatttattaccttaa----gagttatttagaccgcccaaaccaccagatcgaatcgaatctgaattc |
44001825 |
T |
|
| Q |
684 |
gatctgatggttgtattgggtttggaagtttaagtgagatagaaaattatatatgatggttgaggttattttgaaatgaaatggtggtaaatgagagtat |
783 |
Q |
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| T |
44001826 |
gatctgatggttgtattgggtttggaagtttaagtgagatagaaaattatatatgatggttgaggttattttgaaatgaaatggtggtaaatgagagtat |
44001925 |
T |
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| Q |
784 |
ttataggaactaacttaggaagcacattgaaaagagtttgtgcttttacgatactcaataagtgtgtgatattattcga |
862 |
Q |
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| T |
44001926 |
ttataggaactaacttaggaagcacattgaaaagaggttgtgcttttacgatactcaataagtgtgtgattttattcga |
44002004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 5e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 216 - 487
Target Start/End: Complemental strand, 39861749 - 39861478
Alignment:
| Q |
216 |
agtgagccacttaggtgaagggacataatttcattggtggaccccatcagttgccctccaatgaacacagcaggaacaggtgcagtacaacctaacctca |
315 |
Q |
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| T |
39861749 |
agtgaaccacttaggtgtagggacattacttcattggtggaccccacaagccttcctccaatgaatactgcagggacaggtgcattacaacccaactttg |
39861650 |
T |
|
| Q |
316 |
acaaagctttctccatttcccttccttcagggtcttgatcaatttcatgaaccataggcctaatcccaagttcttgaaacagaatgttaactgcatagca |
415 |
Q |
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| T |
39861649 |
ttatagctttctccatttcttttccttcaggatctttgtcaatttcatgaaccacagggaacactccaatttcttgaaacaaaatgttcactgcatagca |
39861550 |
T |
|
| Q |
416 |
tagacaacatgaactctttgtgaaaatcaccacacctttttcagatgccaacctcatcactttgtccatctt |
487 |
Q |
| |
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| T |
39861549 |
caaacaacaagagctcttggtgaaaatcacaacacccttttctgtagccaacctcatcaccttctccatctt |
39861478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 215 - 484
Target Start/End: Complemental strand, 39866204 - 39865935
Alignment:
| Q |
215 |
gagtgagccacttaggtgaagggacataatttcattggtggaccccatcagttgccctccaatgaacacagcaggaacaggtgcagtacaacctaacctc |
314 |
Q |
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|||||| ||||||||||| |||||||| | ||||||||||||||||| || ||||||||||| || ||||| ||||||||| ||||||| ||| | |
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| T |
39866204 |
gagtgaaccacttaggtgtagggacattacttcattggtggaccccacaagccttcctccaatgaatactgcagggacaggtgcattacaacccaacttt |
39866105 |
T |
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| Q |
315 |
aacaaagctttctccatttcccttccttcagggtcttgatcaatttcatgaaccataggcctaatcccaagttcttgaaacagaatgttaactgcatagc |
414 |
Q |
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| ||||||||||||||| | |||||||| |||| ||||||||||||| || ||| | |||| ||||||||||| |||||| |||||||||| |
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| T |
39866104 |
gttatagctttctccatttctttcccttcaggatctttgtcaatttcatgaatcacagggtacactccaatttcttgaaacaaaatgttcactgcatagc |
39866005 |
T |
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| Q |
415 |
atagacaacatgaactctttgtgaaaatcaccacacctttttcagatgccaacctcatcactttgtccat |
484 |
Q |
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|||||||||| || ||||| ||||| | ||||||||| ||||| | |||||||||||||| || ||||| |
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| T |
39866004 |
atagacaacaagagctcttggtgaataccaccacacccttttctgtagccaacctcatcaccttctccat |
39865935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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