View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_10 (Length: 639)
Name: NF0812_low_10
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 377 - 629
Target Start/End: Complemental strand, 14771474 - 14771218
Alignment:
| Q |
377 |
attataatcataaacggtcttgctctcataaaaaagaacaactataaaattcacataatgaacaaataaaactgtgactccagtcaacaatattaattct |
476 |
Q |
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| T |
14771474 |
attataatcataaactgtcttgctctcataaaaaagaacaactataaaattcagataatgagcaaataaaactgtgactccagtcaacaatattaattct |
14771375 |
T |
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| Q |
477 |
tctttgtagcttttctttgatcctttctttgtgaagtagttgaaatatcttact-----tgcaatttcaacacaattgagttattagtttagtgcgtcta |
571 |
Q |
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| T |
14771374 |
tctttgtagcttttctttgaacctttctttgtgaagtagttgaaatatcttacttgacctgcaatttcaacacaattgagttattagtttagtgcgtctt |
14771275 |
T |
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| Q |
572 |
tttctctccaattaatgaatgaaacagcaacnnnnnnncaagtatcatctagcctatg |
629 |
Q |
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| T |
14771274 |
tttctctacaattaatgaatgaaacagcaac-aaaaaacaagtatcatctagcctatg |
14771218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 80 - 282
Target Start/End: Complemental strand, 14771774 - 14771572
Alignment:
| Q |
80 |
acgccatctattctagagtttagcacaaatccccatagcagtatcgtgaaaaattggattggattgctgccgattctcattatagaggaaaaaataatta |
179 |
Q |
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| T |
14771774 |
acgccatctattctagagtttagcacaaacccccatagcagtatcgtgaaaaattggattggattgctgccgattctcattatagaggaaaaaataatta |
14771675 |
T |
|
| Q |
180 |
agaattatgttgtgattgatgattgagattggtgagnnnnnnnncgcatgccttcgttcttgacagtaaaccatttaacacttgtgtcaacgaatcctga |
279 |
Q |
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| T |
14771674 |
agaattatgttgtgattgatgattgagattggcgaggaaaaaaacacatgccttcgttcttggcagtaaaccgtttaacacttgtgtcaacgaatcctga |
14771575 |
T |
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| Q |
280 |
ctt |
282 |
Q |
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| T |
14771574 |
ctt |
14771572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 472 - 520
Target Start/End: Original strand, 47648566 - 47648614
Alignment:
| Q |
472 |
attcttctttgtagcttttctttgatcctttctttgtgaagtagttgaa |
520 |
Q |
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|||||| |||||||||||| ||||| |||||||||||||| ||||||| |
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| T |
47648566 |
attcttttttgtagcttttgtttgaatctttctttgtgaagcagttgaa |
47648614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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