View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_102 (Length: 339)
Name: NF0812_low_102
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_102 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 45518666 - 45519001
Alignment:
| Q |
1 |
cggtgccacaaggcaaacacaaaagaacagaccaaggacacacatcgaaatagacttatcaacgacaccgtttttgtcaatcagcaacgttacatcaata |
100 |
Q |
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| T |
45518666 |
cggtgccacaaggcaaacacaaaagaacagaccaaggacacacatcgaaatagacttatcaacgacaccgtttttgtcaatcagcaacgttacatcaata |
45518765 |
T |
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| Q |
101 |
tcatgcattataattgtggtagtatcataataataatgttagcatataaattaaatgttaacttaattaatttcatattttctcaccaatgcaaaagcca |
200 |
Q |
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| T |
45518766 |
tcatgcattataattgtggtagtatcataa---taatgttagcatataaattaaatgttaacttaattaatttcatattttctcaccaatgcaaaagcca |
45518862 |
T |
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| Q |
201 |
aattgggaccatgacacgacaggttcaggaccattcccggtccaagctacttggttgaaccggttttctacatccttccactccattattccaccttgat |
300 |
Q |
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| T |
45518863 |
aattgggaccatgacacgacaggttcaggaccattcccggtccaagctacttggttgaaccggttttctacatccttccactccattattccaccttgat |
45518962 |
T |
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| Q |
301 |
caccaacaatatcattgatgaatctcaatcccatcactt |
339 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |
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| T |
45518963 |
caccaacaatatcattgatgaatttcaatcccatcactt |
45519001 |
T |
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