View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_105 (Length: 332)
Name: NF0812_low_105
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_105 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 11 - 303
Target Start/End: Complemental strand, 46935142 - 46934850
Alignment:
| Q |
11 |
cagagagaatgttgtacaaaactaaggacaaatttaatcttgaatacaagaatttaaatattgatggttaaattcaagaaattggtttcttttcagtgaa |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
46935142 |
cagaaagaatgttgtacaaaactaaggacaaatttaatcttgactacaagaatttaaatattgatggttaaattcaagaaattgttttcttttcagtgaa |
46935043 |
T |
|
| Q |
111 |
aaattaagatactttatctgcaaaaactaaatatatggaaaggacttcttaattttaaatattacaacaggattccttatcatgcatgattacaataaca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46935042 |
aaattaagatactttatctgcaaaaactaaatatatggaaaggacttcttaattttaaatattacaacaggattccttatcatgcatgattacaataaca |
46934943 |
T |
|
| Q |
211 |
nnnnnnnactgataacgaatataacttttatttatgtttatcgacaatgttgtactgtatgaagaagtttatagcagtaacatttgtcacatg |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46934942 |
tttttttactgataacgaatataacttttatttatgtttatcgacaatgttgtactgtatgaagaagtttatagcggtaacatttgtcacatg |
46934850 |
T |
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