View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_113 (Length: 316)
Name: NF0812_low_113
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_113 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 287
Target Start/End: Complemental strand, 14470749 - 14470478
Alignment:
| Q |
16 |
atcaactatcatctgcgtacgttcccaaacacatactacttcagctacgcgaccaagcagacaaggaagatcatgggcgtcacagctccttcaagcatat |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
14470749 |
atcaactatcatctgcgtacgttcccaaacacatactacttcagctacgcgaccaagcaaacaaggaagatcatgggcgtcacggctccttcaagcatat |
14470650 |
T |
|
| Q |
116 |
ttggagtgcatcccctgcttttcataagagtgttgcaaatgagccagtggactcatccttcagatgttcctcccccttataaaggatacaggtagggtta |
215 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14470649 |
ttggagttcatcccctgcttttcataagagtgttgcaaatgagccagtggactcatccttcagatgttcctcccccttataaaggatacaggtagggtta |
14470550 |
T |
|
| Q |
216 |
ttaaatgcaataatttttgttttcactttccctcagcaatactcaattataaactggattaagggcctatat |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14470549 |
ttaaatgcaataatttttgttttcactttccctcagcaatactcaattataaactggattaagggcctatat |
14470478 |
T |
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