View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_116 (Length: 314)
Name: NF0812_low_116
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_116 |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: scaffold0543 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 35 - 302
Target Start/End: Original strand, 9858 - 10124
Alignment:
| Q |
35 |
gacctataaataaaacatgcatctatgtgttggctcttgattttctttgtatgtatacccaagattaaggtagaaagataggaaaacctctggttttacc |
134 |
Q |
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| T |
9858 |
gacctataaaaaaaacatgcatctatgtgttggctcttgattttctttgtatgtatacccaagattaaggtagaaagataggaaaacctctggttttacc |
9957 |
T |
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| Q |
135 |
ctcgtaatttcaatttgcacttccaagttctaaaaaagtccaaattgacaaaatcatctttacctccttaccaaatttttaaatcttgcataaaagtgct |
234 |
Q |
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| T |
9958 |
ctcgtaatttcaatttgcacttccaagtt-tctaaaagtccaaattgacaaaatcatctttacctccttaccaaatttttaaatcttgcataaaagtgct |
10056 |
T |
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| Q |
235 |
tgtattgagtttgaataaacgaatttttctatataaagtcatttgcaattcagagcaagggttatatt |
302 |
Q |
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| T |
10057 |
tgtattgagtttgtgtaaaagaatttttctatataaagtcatttgcgattcagagcaaaggttatatt |
10124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 35 - 302
Target Start/End: Original strand, 11404 - 11670
Alignment:
| Q |
35 |
gacctataaataaaacatgcatctatgtgttggctcttgattttctttgtatgtatacccaagattaaggtagaaagataggaaaacctctggttttacc |
134 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11404 |
gacctataaaaaaaacatgcatctatgtgttggctcttgattttctttgtatgtatacccaagattaaggtagaaagataggaaaacctctggttttacc |
11503 |
T |
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| Q |
135 |
ctcgtaatttcaatttgcacttccaagttctaaaaaagtccaaattgacaaaatcatctttacctccttaccaaatttttaaatcttgcataaaagtgct |
234 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11504 |
ctcgtaatttcaatttgcacttccaagtt-tctaaaagtccaaattgacaaaatcatctttacctccttaccaaatttttaaatcttgcataaaagtgct |
11602 |
T |
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| Q |
235 |
tgtattgagtttgaataaacgaatttttctatataaagtcatttgcaattcagagcaagggttatatt |
302 |
Q |
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||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
11603 |
tgtattgagtttgtgtaaaagaatttttctatataaagtcatttgcgattcagagcaaaggttatatt |
11670 |
T |
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