View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_119 (Length: 309)
Name: NF0812_low_119
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_119 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 53 - 223
Target Start/End: Complemental strand, 37035174 - 37035004
Alignment:
| Q |
53 |
tttatgattctaaaaaaccaaagtaatgtcaagggaatatttgttttcaaaaggaaaaaatgtttaatcatttaggaacattcccgatgtagagaaaaac |
152 |
Q |
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| T |
37035174 |
tttatgattctaagaaaccaaagtaatgtcaagggaatatttgtttttaaaaggaaaaaatgtttaatcatttaggaacattcccggtgtagagaaaaac |
37035075 |
T |
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| Q |
153 |
aatgttgagtctcgtaaggcctagtataaccaaccgataataccaatatcgttaggttggatatcctctgt |
223 |
Q |
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|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37035074 |
aatgttgagtttcgtaaggcctaatataaccaaccgataataccaatatcgttaggttggatatcctctgt |
37035004 |
T |
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