View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0812_low_123 (Length: 309)

Name: NF0812_low_123
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0812_low_123
NF0812_low_123
[»] chr3 (7 HSPs)
chr3 (36-295)||(40573327-40573586)
chr3 (36-295)||(40579784-40580043)
chr3 (39-283)||(40568729-40568973)
chr3 (45-284)||(40598243-40598482)
chr3 (33-240)||(40602279-40602486)
chr3 (39-240)||(40591635-40591836)
chr3 (222-293)||(40582056-40582127)
[»] chr2 (1 HSPs)
chr2 (39-295)||(2014751-2015007)
[»] chr4 (1 HSPs)
chr4 (81-212)||(14029473-14029604)
[»] chr1 (5 HSPs)
chr1 (78-139)||(9118800-9118861)
chr1 (78-158)||(9155660-9155740)
chr1 (72-118)||(1815790-1815836)
chr1 (82-130)||(9161600-9161648)
chr1 (79-139)||(9170417-9170477)


Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 36 - 295
Target Start/End: Original strand, 40573327 - 40573586
Alignment:
Q  36 ggaacattggggtatcttgacccagaatacttccacacaagccaattaacagagaagagtgatgtttatagttttggagtagtcctagcagagctactga 135  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40573327 ggaacattagggtatcttgacccagaatacttccacacaagccaattaacagagaagagtgatgtttatagatttggagtagtcctagcagagctactga 40573426  T
Q  136 caggaaagaaagcgctatcttttgggaggcctgaggttgatagaaaccttgccgcatactttgtttcttcgatgaaacagggtcggttacttcatatttt 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40573427 caggaaagaaagcgctatcttttgggaggcctgaggttgatagaaaccttgccgcatactttgtttcttcgatgaaacagggtcggttacttcatatttt 40573526  T
Q  236 ggacaaaaatatagatgagccaaatattgagcaactaaaagaggttgcctatattgcaga 295  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  40573527 ggacaaaaatatagatgaggcaaatattgagcaactaaaagaggttgcccatattgcaga 40573586  T

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Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 36 - 295
Target Start/End: Original strand, 40579784 - 40580043
Alignment:
Q  36 ggaacattggggtatcttgacccagaatacttccacacaagccaattaacagagaagagtgatgtttatagttttggagtagtcctagcagagctactga 135  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |    
T  40579784 ggaacattagggtatcttgacccagaatacttccacacaagccaattaacagagaagagtgatgtttatagatttggagtagtcatagcagagctactaa 40579883  T
Q  136 caggaaagaaagcgctatcttttgggaggcctgaggttgatagaaaccttgccgcatactttgtttcttcgatgaaacagggtcggttacttcatatttt 235  Q
    | |||||||| || ||||||||||| ||||| ||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40579884 cgggaaagaaggcactatcttttggcaggccagaggtagatagaaacctttccgcatactttgtttcttcaatgaaacagggtcggttacttcatatttt 40579983  T
Q  236 ggacaaaaatatagatgagccaaatattgagcaactaaaagaggttgcctatattgcaga 295  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||    
T  40579984 ggacaaaaatatagatgagacaaatattgagcaacttaaagaggttgccgatattgcaga 40580043  T

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Target: chr3; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 39 - 283
Target Start/End: Original strand, 40568729 - 40568973
Alignment:
Q  39 acattggggtatcttgacccagaatacttccacacaagccaattaacagagaagagtgatgtttatagttttggagtagtcctagcagagctactgacag 138  Q
    ||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  40568729 acattagggtatcttgacccagaatacttcctcacaagccagttaacagagaagagtgatgtttatagttttggggtggtcctagcagagctactgacag 40568828  T
Q  139 gaaagaaagcgctatcttttgggaggcctgaggttgatagaaaccttgccgcatactttgtttcttcgatgaaacagggtcggttacttcatattttgga 238  Q
    ||||||| || |||||||| || ||||| ||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||    
T  40568829 gaaagaaggcactatctttgggcaggccagaggttgatagaaaccttgccgcgtactttgtttcttcaatgaaagagggtcggttacttcatattttgga 40568928  T
Q  239 caaaaatatagatgagccaaatattgagcaactaaaagaggttgc 283  Q
    ||||| ||||||| |  |  |||||||||||||||| ||||||||    
T  40568929 caaaagtatagataatgctgatattgagcaactaaaggaggttgc 40568973  T

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Target: chr3; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 45 - 284
Target Start/End: Original strand, 40598243 - 40598482
Alignment:
Q  45 gggtatcttgacccagaatacttccacacaagccaattaacagagaagagtgatgtttatagttttggagtagtcctagcagagctactgacaggaaaga 144  Q
    |||||||||||||| || ||||||||||||||||| ||||||||||||||||| || ||||| || ||||| ||||||||||||||||| |||||| | |    
T  40598243 gggtatcttgaccctgagtacttccacacaagccagttaacagagaagagtgacgtctatagcttcggagttgtcctagcagagctactaacaggagaaa 40598342  T
Q  145 aagcgctatcttttgggaggcctgaggttgatagaaaccttgccgcatactttgtttcttcgatgaaacagggtcggttacttcatattttggacaaaaa 244  Q
    | ||  |||||||||| ||||| ||||| ||||||||||||||    |||||||| |||| ||| ||| ||| ||  |||||||||||| | ||||||||    
T  40598343 aggcattatcttttggcaggccagaggtagatagaaaccttgcaatgtactttgtgtcttggattaaagaggatcaattacttcatattctagacaaaaa 40598442  T
Q  245 tatagatgagccaaatattgagcaactaaaagaggttgcc 284  Q
    ||||||||||  ||||||||| || ||||| || ||||||    
T  40598443 tatagatgagaaaaatattgaacatctaaaggaagttgcc 40598482  T

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Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 33 - 240
Target Start/End: Original strand, 40602279 - 40602486
Alignment:
Q  33 cagggaacattggggtatcttgacccagaatacttccacacaagccaattaacagagaagagtgatgtttatagttttggagtagtcctagcagagctac 132  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||   ||||| |||||||||||||||||||| ||||| || || ||||||||||||     
T  40602279 caggggacattggggtatcttgacccagaatacttccagacaagcatgttaactgagaagagtgatgtttatagctttggggttgttctagcagagctat 40602378  T
Q  133 tgacaggaaagaaagcgctatcttttgggaggcctgaggttgatagaaaccttgccgcatactttgtttcttcgatgaaacagggtcggttacttcatat 232  Q
    |||||||||||||||| |||| |||| | ||||| || || || |||| ||||||     | ||||||||||| |||||| | | || ||| ||||||||    
T  40602379 tgacaggaaagaaagcactatgttttagcaggccagatgtagaaagaagccttgcaatgcattttgtttcttcaatgaaagaagatcagttgcttcatat 40602478  T
Q  233 tttggaca 240  Q
    | ||||||    
T  40602479 tctggaca 40602486  T

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Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 39 - 240
Target Start/End: Original strand, 40591635 - 40591836
Alignment:
Q  39 acattggggtatcttgacccagaatacttccacacaagccaattaacagagaagagtgatgtttatagttttggagtagtcctagcagagctactgacag 138  Q
    |||||||||||||| |||||||||||||| || || |||   ||||| |||||||||||||| || || ||||| || ||||||||||||||||||||||    
T  40591635 acattggggtatctcgacccagaatacttgcaaactagcgtgttaacggagaagagtgatgtctacagctttggggttgtcctagcagagctactgacag 40591734  T
Q  139 gaaagaaagcgctatcttttgggaggcctgaggttgatagaaaccttgccgcatactttgtttcttcgatgaaacagggtcggttacttcatattttgga 238  Q
    |||||||||| |||| || | | || || | ||| || |||| ||||||    |||||||||||||| |||||| | | ||||||| |||||||| ||||    
T  40591735 gaaagaaagcactatgttatagcagaccagtggtagaaagaagccttgcgatgtactttgtttcttcaatgaaagaagatcggttagttcatattctgga 40591834  T
Q  239 ca 240  Q
    ||    
T  40591835 ca 40591836  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 293
Target Start/End: Original strand, 40582056 - 40582127
Alignment:
Q  222 ttacttcatattttggacaaaaatatagatgagccaaatattgagcaactaaaagaggttgcctatattgca 293  Q
    ||||||||| || || |||||||||||||||||  ||||||||||| |||||| || ||| || ||||||||    
T  40582056 ttacttcatgttatgaacaaaaatatagatgaggaaaatattgagccactaaaggaagtttcccatattgca 40582127  T

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Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 39 - 295
Target Start/End: Complemental strand, 2015007 - 2014751
Alignment:
Q  39 acattggggtatcttgacccagaatacttccacacaagccaattaacagagaagagtgatgtttatagttttggagtagtcctagcagagctactgacag 138  Q
    |||| |||||| |||||||| ||||| ||||||||||||||||| |||||||||||||| || ||||| |||||||| || ||||||||||||||| |||    
T  2015007 acatgggggtaccttgacccggaatatttccacacaagccaattgacagagaagagtgacgtctatagctttggagttgtactagcagagctactggcag 2014908  T
Q  139 gaaagaaagcgctatcttttgggaggcctgaggttgatagaaaccttgccgcatactttgtttcttcgatgaaacagggtcggttacttcatattttgga 238  Q
    ||||||| || ||||||||| | ||||| ||| | ||||||||||||||    |||||||||||||| |||||| | |||| ||||||||||||||||||    
T  2014907 gaaagaaggcactatcttttagcaggccagagttggatagaaaccttgcattgtactttgtttcttcaatgaaagatggtcagttacttcatattttgga 2014808  T
Q  239 caaaaatatagatgagccaaatattgagcaactaaaagaggttgcctatattgcaga 295  Q
    ||||||||| || ||| | || |||||||||||||| |||||||||  |||||||||    
T  2014807 caaaaatattgacgaggcgaacattgagcaactaaaggaggttgcccttattgcaga 2014751  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 81 - 212
Target Start/End: Complemental strand, 14029604 - 14029473
Alignment:
Q  81 ttaacagagaagagtgatgtttatagttttggagtagtcctagcagagctactgacaggaaagaaagcgctatcttttgggaggcctgaggttgatagaa 180  Q
    |||||||||||| ||||||| ||||||||||| || ||||||||||||||||| ||| |||| ||| | | ||||||| | ||| | | ||| || ||||    
T  14029604 ttaacagagaagggtgatgtctatagttttggggttgtcctagcagagctactcacacgaaataaaacaccatctttttgtaggtcagtggtagaaagaa 14029505  T
Q  181 accttgccgcatactttgtttcttcgatgaaa 212  Q
    |||||||    |||||||||||||| ||||||    
T  14029504 accttgcaatgtactttgtttcttcaatgaaa 14029473  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 9118800 - 9118861
Alignment:
Q  78 caattaacagagaagagtgatgtttatagttttggagtagtcctagcagagctactgacagg 139  Q
    |||||||| ||||| |||||||||||||| ||||||||||| || |||||||| || |||||    
T  9118800 caattaaccgagaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacagg 9118861  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 9155740 - 9155660
Alignment:
Q  78 caattaacagagaagagtgatgtttatagttttggagtagtcctagcagagctactgacaggaaagaaagcgctatctttt 158  Q
    |||||||| ||||| |||||||| ||||| ||||||||||| || || ||||| ||||||||| | ||| | |||||||||    
T  9155740 caattaaccgagaaaagtgatgtctatagctttggagtagtgcttgcggagcttctgacaggagataaacctctatctttt 9155660  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 1815836 - 1815790
Alignment:
Q  72 acaagccaattaacagagaagagtgatgtttatagttttggagtagt 118  Q
    |||||||||||||| ||||| |||||||| ||||| |||||||||||    
T  1815836 acaagccaattaactgagaaaagtgatgtatatagctttggagtagt 1815790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 9161648 - 9161600
Alignment:
Q  82 taacagagaagagtgatgtttatagttttggagtagtcctagcagagct 130  Q
    |||||||||| |||||||||||||| ||||| ||||| || ||||||||    
T  9161648 taacagagaaaagtgatgtttatagctttggtgtagttcttgcagagct 9161600  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 9170477 - 9170417
Alignment:
Q  79 aattaacagagaagagtgatgtttatagttttggagtagtcctagcagagctactgacagg 139  Q
    ||||||| || || |||||||||||||| ||||||||||| || |||||||| || |||||    
T  9170477 aattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacagg 9170417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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