View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0812_low_128 (Length: 298)
Name: NF0812_low_128
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0812_low_128 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 65 - 256
Target Start/End: Complemental strand, 1624924 - 1624734
Alignment:
| Q |
65 |
caatatgcattttctgaaacataacaaaggtattaaaaatgattttannnnnnnnctatttaaaattaagtattgtactgctaaaaaattattcattaac |
164 |
Q |
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| T |
1624924 |
caatatgcattttctgaaacataacaaaggtattaacaatgattttattttttt-ctatttaaaattaagtattgtactgctaaaaaattattcaataac |
1624826 |
T |
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| Q |
165 |
tttatttgggaataattaaatgaaagataaattattgaatgtttattttgtgacatacatagagtaatataaatatgatagggttaaaaatg |
256 |
Q |
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| T |
1624825 |
tttatttaggaagaattaaatgaaagataaattattgaatgtttattttgtgacatacatagagtaatataaatatgatagggttaaaaatg |
1624734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 65 - 256
Target Start/End: Complemental strand, 1607917 - 1607726
Alignment:
| Q |
65 |
caatatgcattttctgaaacataacaaaggtattaaaaatgattttannnnnnnnctatttaaaatt-aagtattgtactgctaaaaaattattcattaa |
163 |
Q |
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| T |
1607917 |
caatatgcatttcctgaaacatagcaaaggtactaacaatgattttatattttt-ctatttaaaatttaagtattgtgctgctaaaaagttattcaataa |
1607819 |
T |
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| Q |
164 |
ctttatttgggaataattaaatgaaagataaattattgaatgtttattttgtgacatacatagagtaatataaatatgatagggttaaaaatg |
256 |
Q |
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| T |
1607818 |
ctttatttaggaagaattaaatgaaagataaattatggaatgtttattttgtgacatacatagagtaatataaatatgatagggttgaaaatg |
1607726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 130 - 256
Target Start/End: Complemental strand, 1630845 - 1630719
Alignment:
| Q |
130 |
ttaagtattgtactgctaaaaaattattcattaactttatttgggaataattaaatgaaagataaattattgaatgtttattttgtgacatacatagagt |
229 |
Q |
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| T |
1630845 |
ttaagtattgtactgctaaaaggttattcaataactttattcaggaagaattaaatgaaagataaattattgagtgtttattttgtgacatacatagagt |
1630746 |
T |
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| Q |
230 |
aatataaatatgatagggttaaaaatg |
256 |
Q |
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| T |
1630745 |
aatataaatatgatagggttgaaaatg |
1630719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 1607678 - 1607639
Alignment:
| Q |
259 |
taatttgtagatcttcaagtatcttcaatattttaggtat |
298 |
Q |
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| T |
1607678 |
taatttgtagatgttcaagtatcttcaatattttaggtat |
1607639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 1624688 - 1624649
Alignment:
| Q |
259 |
taatttgtagatcttcaagtatcttcaatattttaggtat |
298 |
Q |
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| T |
1624688 |
taatttgtagatgttcaagtatcttcaatattttaggtat |
1624649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 158
Target Start/End: Original strand, 10819135 - 10819227
Alignment:
| Q |
65 |
caatatgcattttctgaaacataacaaaggtattaaaaatgattttannnnnnnnctatttaaaattaagtattgtactgctaaaaaattattc |
158 |
Q |
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| T |
10819135 |
caatatgcatttcctgaatcataaaacaggtactaacaatgattttattttttt-ctatttaaaagtaagtattgtagtgctaaaaaattattc |
10819227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 1631407 - 1631361
Alignment:
| Q |
65 |
caatatgcattttctgaaacataacaaaggtattaaaaatgatttta |
111 |
Q |
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| T |
1631407 |
caatatgcatttcctgaaacatagcaaaggtactaacaatgatttta |
1631361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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