View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0812_low_129 (Length: 298)

Name: NF0812_low_129
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0812_low_129
NF0812_low_129
[»] chr1 (32 HSPs)
chr1 (13-200)||(23664087-23664274)
chr1 (28-200)||(25095118-25095290)
chr1 (50-200)||(17967303-17967453)
chr1 (28-200)||(21906332-21906504)
chr1 (28-200)||(5049408-5049580)
chr1 (28-200)||(22070456-22070628)
chr1 (50-200)||(48596331-48596481)
chr1 (53-200)||(27430769-27430916)
chr1 (28-200)||(34307425-34307597)
chr1 (28-200)||(48999356-48999526)
chr1 (56-165)||(49229351-49229460)
chr1 (53-165)||(5509869-5509980)
chr1 (51-166)||(12027763-12027878)
chr1 (50-164)||(5209695-5209809)
chr1 (55-165)||(9023193-9023303)
chr1 (50-167)||(36296668-36296785)
chr1 (61-167)||(24185677-24185782)
chr1 (50-167)||(42722203-42722320)
chr1 (50-166)||(28945832-28945948)
chr1 (56-136)||(47397570-47397650)
chr1 (116-200)||(26465116-26465202)
chr1 (50-153)||(48646129-48646232)
chr1 (50-166)||(26221650-26221766)
chr1 (50-138)||(44310430-44310518)
chr1 (64-165)||(41665592-41665692)
chr1 (50-162)||(12783987-12784098)
chr1 (100-165)||(47559565-47559629)
chr1 (100-164)||(17385407-17385470)
chr1 (264-298)||(25095358-25095392)
chr1 (264-298)||(44310837-44310871)
chr1 (264-298)||(8737770-8737804)
chr1 (264-298)||(23663988-23664022)
[»] chr5 (27 HSPs)
chr5 (28-200)||(5578587-5578759)
chr5 (53-200)||(13490368-13490515)
chr5 (27-200)||(13382579-13382752)
chr5 (28-200)||(23962803-23962975)
chr5 (28-200)||(2676918-2677089)
chr5 (54-200)||(9409531-9409677)
chr5 (54-200)||(42879574-42879720)
chr5 (50-195)||(18889043-18889188)
chr5 (52-164)||(13826235-13826347)
chr5 (28-200)||(39537378-39537540)
chr5 (52-167)||(29789522-29789637)
chr5 (59-167)||(13820881-13820989)
chr5 (67-165)||(8806333-8806430)
chr5 (58-152)||(20892294-20892388)
chr5 (50-164)||(38915730-38915843)
chr5 (56-164)||(29149634-29149741)
chr5 (50-167)||(16040198-16040315)
chr5 (50-167)||(38491012-38491129)
chr5 (50-166)||(7850280-7850396)
chr5 (53-164)||(5121205-5121316)
chr5 (50-164)||(6769378-6769489)
chr5 (55-140)||(43171438-43171523)
chr5 (100-164)||(37134753-37134817)
chr5 (80-166)||(3654677-3654762)
chr5 (264-298)||(5578489-5578523)
chr5 (51-167)||(32698734-32698849)
chr5 (264-298)||(9409441-9409475)
[»] chr2 (40 HSPs)
chr2 (50-200)||(27861800-27861950)
chr2 (50-200)||(2554031-2554181)
chr2 (50-200)||(44314022-44314172)
chr2 (50-200)||(44322201-44322351)
chr2 (28-200)||(33015172-33015344)
chr2 (50-200)||(22575963-22576113)
chr2 (50-200)||(41825943-41826093)
chr2 (28-200)||(19685746-19685916)
chr2 (51-200)||(6221362-6221511)
chr2 (50-162)||(38566216-38566328)
chr2 (50-164)||(33054748-33054862)
chr2 (50-167)||(19091195-19091312)
chr2 (50-163)||(41302463-41302576)
chr2 (28-165)||(38422950-38423087)
chr2 (57-162)||(10022892-10022997)
chr2 (50-167)||(11199297-11199414)
chr2 (50-165)||(24484451-24484566)
chr2 (50-164)||(14903999-14904113)
chr2 (50-132)||(41422922-41423004)
chr2 (50-167)||(7880371-7880488)
chr2 (64-165)||(13597889-13597989)
chr2 (56-167)||(30386835-30386945)
chr2 (50-164)||(45277506-45277620)
chr2 (50-167)||(19677994-19678111)
chr2 (50-163)||(6882973-6883088)
chr2 (55-161)||(9057380-9057484)
chr2 (50-167)||(2565587-2565704)
chr2 (52-167)||(29303144-29303259)
chr2 (107-165)||(41422863-41422921)
chr2 (57-166)||(25621421-25621529)
chr2 (53-167)||(18781194-18781308)
chr2 (102-163)||(9425217-9425278)
chr2 (123-166)||(25416074-25416117)
chr2 (28-92)||(31549172-31549236)
chr2 (56-163)||(43673290-43673397)
chr2 (264-298)||(2554245-2554279)
chr2 (264-298)||(7444111-7444145)
chr2 (264-298)||(41825845-41825879)
chr2 (53-92)||(25416124-25416163)
chr2 (264-298)||(27861707-27861741)
[»] chr8 (25 HSPs)
chr8 (28-200)||(1981549-1981721)
chr8 (28-200)||(3762650-3762822)
chr8 (28-200)||(45117419-45117591)
chr8 (28-200)||(16729683-16729855)
chr8 (28-200)||(31597475-31597647)
chr8 (50-200)||(4432051-4432201)
chr8 (53-200)||(40971420-40971567)
chr8 (54-200)||(7972960-7973106)
chr8 (54-187)||(39906226-39906359)
chr8 (50-200)||(7263611-7263761)
chr8 (50-165)||(9137509-9137625)
chr8 (53-166)||(9382238-9382351)
chr8 (50-165)||(24190359-24190474)
chr8 (56-166)||(11648767-11648876)
chr8 (50-164)||(6927561-6927675)
chr8 (50-167)||(28509226-28509343)
chr8 (63-166)||(32073246-32073349)
chr8 (50-167)||(2879229-2879346)
chr8 (51-166)||(2807702-2807817)
chr8 (54-164)||(24682594-24682704)
chr8 (54-165)||(28374579-28374688)
chr8 (50-91)||(602275-602316)
chr8 (264-298)||(7972862-7972896)
chr8 (52-165)||(23232238-23232351)
chr8 (264-294)||(40971616-40971646)
[»] chr4 (32 HSPs)
chr4 (28-200)||(10095001-10095173)
chr4 (50-200)||(7413723-7413872)
chr4 (50-200)||(7459804-7459953)
chr4 (54-200)||(39480230-39480376)
chr4 (54-168)||(6261592-6261706)
chr4 (50-167)||(52458991-52459108)
chr4 (50-167)||(52460248-52460365)
chr4 (53-167)||(10142121-10142235)
chr4 (50-165)||(1843172-1843287)
chr4 (50-164)||(13957225-13957339)
chr4 (53-165)||(9921865-9921977)
chr4 (54-200)||(36213712-36213857)
chr4 (66-165)||(42512245-42512344)
chr4 (52-165)||(3665477-3665589)
chr4 (50-167)||(51337617-51337734)
chr4 (100-164)||(24611366-24611430)
chr4 (50-166)||(28143468-28143584)
chr4 (50-161)||(29283029-29283139)
chr4 (55-166)||(10373385-10373495)
chr4 (62-164)||(41509209-41509310)
chr4 (50-167)||(14192335-14192452)
chr4 (53-128)||(23935828-23935903)
chr4 (54-167)||(21319991-21320104)
chr4 (104-164)||(25201039-25201099)
chr4 (54-165)||(9900076-9900187)
chr4 (103-164)||(51890447-51890508)
chr4 (103-164)||(51890721-51890782)
chr4 (54-165)||(56366889-56366999)
chr4 (264-298)||(6261489-6261523)
chr4 (50-112)||(24612043-24612105)
chr4 (264-298)||(36213921-36213955)
chr4 (53-86)||(51890934-51890967)
[»] chr3 (29 HSPs)
chr3 (28-200)||(10994128-10994300)
chr3 (50-200)||(27941495-27941645)
chr3 (50-200)||(53076947-53077097)
chr3 (28-200)||(25071596-25071768)
chr3 (50-200)||(19157068-19157218)
chr3 (50-200)||(52448118-52448268)
chr3 (54-197)||(15760838-15760981)
chr3 (50-165)||(29713781-29713896)
chr3 (28-166)||(47184918-47185056)
chr3 (54-164)||(1698398-1698508)
chr3 (51-165)||(10993086-10993200)
chr3 (57-165)||(44663338-44663446)
chr3 (54-166)||(11640005-11640117)
chr3 (50-164)||(30191185-30191298)
chr3 (76-164)||(3918145-3918234)
chr3 (50-167)||(23044908-23045025)
chr3 (50-167)||(31884968-31885085)
chr3 (60-166)||(12893035-12893141)
chr3 (50-116)||(24927913-24927979)
chr3 (102-165)||(53472148-53472211)
chr3 (53-164)||(1424675-1424782)
chr3 (50-164)||(40145441-40145552)
chr3 (50-167)||(6024777-6024894)
chr3 (65-154)||(17147208-17147296)
chr3 (53-164)||(16876891-16876999)
chr3 (100-164)||(4127549-4127612)
chr3 (54-165)||(6583948-6584059)
chr3 (56-90)||(4127314-4127348)
chr3 (264-298)||(52448332-52448366)
[»] scaffold0016 (4 HSPs)
scaffold0016 (50-194)||(87618-87762)
scaffold0016 (50-194)||(89044-89188)
scaffold0016 (50-190)||(88096-88236)
scaffold0016 (50-190)||(88572-88712)
[»] chr6 (24 HSPs)
chr6 (28-197)||(18675306-18675475)
chr6 (28-200)||(34043497-34043669)
chr6 (50-200)||(22012095-22012245)
chr6 (28-197)||(1422908-1423077)
chr6 (28-200)||(1603323-1603494)
chr6 (50-196)||(1131749-1131895)
chr6 (50-200)||(20990412-20990564)
chr6 (50-165)||(11680871-11680986)
chr6 (100-200)||(21442662-21442762)
chr6 (50-165)||(31129720-31129834)
chr6 (50-164)||(15060141-15060255)
chr6 (53-164)||(26817336-26817445)
chr6 (50-165)||(19107911-19108026)
chr6 (50-167)||(33516638-33516755)
chr6 (57-165)||(4065601-4065709)
chr6 (60-164)||(3229212-3229315)
chr6 (50-164)||(12269374-12269487)
chr6 (64-136)||(26212906-26212978)
chr6 (64-163)||(4090808-4090907)
chr6 (100-140)||(22524751-22524791)
chr6 (265-298)||(1131962-1131995)
chr6 (28-130)||(13758826-13758928)
chr6 (264-298)||(1423144-1423178)
chr6 (107-167)||(14677761-14677821)
[»] chr7 (35 HSPs)
chr7 (28-197)||(8389281-8389450)
chr7 (28-200)||(20394764-20394936)
chr7 (50-200)||(13754090-13754240)
chr7 (50-200)||(31072503-31072653)
chr7 (50-200)||(35477956-35478106)
chr7 (50-200)||(18667343-18667493)
chr7 (28-200)||(4539819-4539986)
chr7 (57-166)||(21863581-21863690)
chr7 (82-200)||(1623572-1623689)
chr7 (50-167)||(39038903-39039020)
chr7 (54-165)||(24441941-24442052)
chr7 (55-166)||(41822148-41822259)
chr7 (53-166)||(29636904-29637017)
chr7 (51-167)||(40934025-40934140)
chr7 (55-165)||(43179439-43179548)
chr7 (50-167)||(48636668-48636785)
chr7 (50-167)||(6189415-6189532)
chr7 (50-126)||(5770852-5770928)
chr7 (58-165)||(44733619-44733725)
chr7 (50-167)||(48238426-48238542)
chr7 (58-164)||(8604612-8604718)
chr7 (50-167)||(8069546-8069663)
chr7 (68-164)||(8113930-8114024)
chr7 (102-165)||(9420482-9420545)
chr7 (50-120)||(47522415-47522485)
chr7 (76-167)||(28460255-28460345)
chr7 (53-167)||(135632-135746)
chr7 (82-155)||(3124281-3124354)
chr7 (76-164)||(35118263-35118348)
chr7 (50-163)||(36628434-36628547)
chr7 (80-164)||(45446083-45446166)
chr7 (264-298)||(20394666-20394700)
chr7 (54-165)||(10015747-10015857)
chr7 (265-298)||(13754305-13754338)
chr7 (63-132)||(23381092-23381161)
[»] scaffold1266 (1 HSPs)
scaffold1266 (51-165)||(1289-1403)
[»] scaffold0093 (1 HSPs)
scaffold0093 (28-155)||(50881-51008)
[»] scaffold0263 (1 HSPs)
scaffold0263 (54-165)||(18613-18724)
[»] scaffold0178 (1 HSPs)
scaffold0178 (53-165)||(2443-2555)
[»] scaffold0160 (1 HSPs)
scaffold0160 (54-164)||(25097-25207)
[»] scaffold0116 (1 HSPs)
scaffold0116 (56-165)||(40797-40906)
[»] scaffold0743 (1 HSPs)
scaffold0743 (50-164)||(3318-3432)
[»] scaffold1364 (1 HSPs)
scaffold1364 (104-165)||(873-934)
[»] scaffold0137 (1 HSPs)
scaffold0137 (76-164)||(21455-21544)
[»] scaffold0002 (1 HSPs)
scaffold0002 (104-165)||(98364-98425)
[»] scaffold0064 (1 HSPs)
scaffold0064 (100-166)||(60538-60606)


Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 23664274 - 23664087
Alignment:
Q  13 aatatgctcgaaaataagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatcc 112  Q
    |||||||||||||||||||||||| |||||       |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23664274 aatatgctcgaaaataagaaattgatgatatttttttgggccctttgttcctaataatgtgtttcactaatattaaaaatgttgaccatatttattatcc 23664175  T
Q  113 aagaaattgggataattttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23664174 aagaaattgggataattttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 23664087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 25095118 - 25095290
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||    
T  25095118 aagaaattggtgatatttttttgggccctttgttcctaataatgtgcttcactaatattaaaaatattgacggtatttattatccaagaaattgggataa 25095217  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  25095218 ttttcataacaaagcaaattctattttagttgaaaatgaggtgttaaaatttcagtctacttcgcatgtgcta 25095290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 17967453 - 17967303
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17967453 gggccctttgttcctaataatgtgcttcactaatattaaaaatatcgacgatatttattatccaagaaattgggataattttcgtaacaaagcaaattct 17967354  T
Q  150 attttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||||||||||||| |||||  |||||||||||||||||| |||||||||    
T  17967353 attttagttgaaaatagggtgctaaaatttcagtctacttcacatgtgcta 17967303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 21906332 - 21906504
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       |||||||||| |||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  21906332 aagaaattggtgatatttttttgggccctttgctcctaataatgtgcttcactaatattaaaaatatcgacaatatttattatccaagaaattgggataa 21906431  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||| ||||||||||||||||||||||||||||||| |||||  |||||||||||||||||| |||||||||    
T  21906432 ttttcgtaacaaagcaaattctattttagttgaaaatagggtgctaaaatttcagtctacttcacatgtgcta 21906504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 5049408 - 5049580
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       |||||||||| |||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  5049408 aagaaattggtgatatttttttgggccctttgctcctaataatgtacttcactaatattaaaaatatcgacgatatttattatccaagaaattgggataa 5049507  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||| ||||||||||||||||||||||||||||||| |||||  |||||||||||||||||| |||||||||    
T  5049508 ttttcgtaacaaagcaaattctattttagttgaaaatagggtgctaaaatttcagtctacttcacatgtgcta 5049580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 22070456 - 22070628
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||||| |||||    
T  22070456 aagaaattggtgatatttttttgggccctttgttcctaataatgtgcttcactaatattaaaaatatcgacgatatttattatccaaaaaattgagataa 22070555  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||||||||| ||||||||||||||||||||||||| |||||  | ||||||||||||||||||||||||||    
T  22070556 ttttcataacagagcaaattctattttagttgaaaatagggtgctagaatttcagtctacttcgcatgtgcta 22070628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 48596481 - 48596331
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  48596481 gggccctttgttcctaataatgtgcttcattaatattaaaaatatcgacgatatttattatccaagaaattaggataattttcataacaaagcaaattct 48596382  T
Q  150 attttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||||||||||||| | |||  |||||||||||||||||| |||||||||    
T  48596381 attttagttgaaaatagtgtgctaaaatttcagtctacttcacatgtgcta 48596331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 53 - 200
Target Start/End: Complemental strand, 27430916 - 27430769
Alignment:
Q  53 ccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatt 152  Q
    ||||||| |||||||||||| ||||||||||| ||||||| | ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27430916 ccctttgctcctaataatgtacttcactaatactaaaaatatcgacgatatttattatccaagaaattgggataattttcgtaacaaagcaaattctatt 27430817  T
Q  153 ttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    |||||||||||| |||||  |||||||||||||||||| |||||||||    
T  27430816 ttagttgaaaatagggtgctaaaatttcagtctacttcacatgtgcta 27430769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 28 - 200
Target Start/End: Complemental strand, 34307597 - 34307425
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       |||||||||  |||||||||||||||||||||||||||||||| | ||| ||||||||||| ||||||||||||||||    
T  34307597 aagaaattggtgatatttttttgggccctttactcctaataatgtgcttcactaatattaaaaatatcgacgatatttattattcaagaaattgggataa 34307498  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||| ||||||||||||||||||||||||||||||| |||||  ||||||||| |||||||| |||||||||    
T  34307497 ttttcgtaacaaagcaaattctattttagttgaaaatagggtgccaaaatttcattctacttcacatgtgcta 34307425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 48999356 - 48999526
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       |||||||||| ||||||||||||||||||||||||||||| || | ||| ||||||||||||||||||||||||||||    
T  48999356 aagaaattggtgatatttttttgggccctttgctcctaataatgtgcttcactaatattaaacatatcgacgatatttattatccaagaaattgggataa 48999455  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||| ||||  ||||||||||||||||||||||||| | |||  |||||||||||||||||| |||||||||    
T  48999456 ttttcgtaac--agcaaattctattttagttgaaaatagagtgctaaaatttcagtctacttcacatgtgcta 48999526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 56 - 165
Target Start/End: Complemental strand, 49229460 - 49229351
Alignment:
Q  56 tttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatttta 155  Q
    ||||||| |||||||||| |||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||  ||||| |||||||    
T  49229460 tttgttcttaataatgtgtttcactaatattaaaaatattgatgatatttattatccaagaaattgggataattttcataacaaaataaattatatttta 49229361  T
Q  156 gttgaaaatg 165  Q
    ||||||||||    
T  49229360 gttgaaaatg 49229351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 53 - 165
Target Start/End: Complemental strand, 5509980 - 5509869
Alignment:
Q  53 ccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatt 152  Q
    |||||||||| ||| ||||||||   |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  5509980 ccctttgttcttaaaaatgtgctag-ctaatattaaaaatattggccatatttattatccaagaaattgggataattttcataacaaaataaattctatt 5509882  T
Q  153 ttagttgaaaatg 165  Q
    |||| ||||||||    
T  5509881 ttagatgaaaatg 5509869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 51 - 166
Target Start/End: Original strand, 12027763 - 12027878
Alignment:
Q  51 ggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattcta 150  Q
    |||||||||||||||||||||||||||||||||||||||||| |||   ||||||||| || || |||||  ||| |||||||||||||| ||||||  |    
T  12027763 ggccctttgttcctaataatgtgcttcactaatattaaaaatattggtgatatttattttcgaataaattttgatgattttcataacaaaacaaattaga 12027862  T
Q  151 ttttagttgaaaatgg 166  Q
    ||||||||||||||||    
T  12027863 ttttagttgaaaatgg 12027878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 164
Target Start/End: Complemental strand, 5209809 - 5209695
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||| ||||||||| ||||| | |||||||| ||||||| || |||   ||||||||||||||| ||||||||||||||||||||||||| |||||| |    
T  5209809 gggccatttgttcctgataattttcttcactactattaaacatattggtgatatttattatccaataaattgggataattttcataacaaaacaaattat 5209710  T
Q  150 attttagttgaaaat 164  Q
    |||||||||||||||    
T  5209709 attttagttgaaaat 5209695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 165
Target Start/End: Original strand, 9023193 - 9023303
Alignment:
Q  55 ctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatttt 154  Q
    |||| ||| ||||||||||| ||||||||||||||||| | ||  |||||||||||||||  |||||||||| |||| |||||||| |||||||||||||    
T  9023193 ctttattcataataatgtgcctcactaatattaaaaatatcgatgatatttattatccaaataattgggatagttttaataacaaaacaaattctatttt 9023292  T
Q  155 agttgaaaatg 165  Q
    |||||||||||    
T  9023293 agttgaaaatg 9023303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 50 - 167
Target Start/End: Original strand, 36296668 - 36296785
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||||  | ||||||||||||||| |     ||||||||||||||| ||||||||| |||||||||||| || |||||| |    
T  36296668 gggccctttgttcctaataatgtgtcttactaatattaaaaatatatgtgatatttattatccaaaaaattgggagaattttcataaccaaacaaattat 36296767  T
Q  150 attttagttgaaaatggg 167  Q
    ||||||||||||||||||    
T  36296768 attttagttgaaaatggg 36296785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 24185782 - 24185677
Alignment:
Q  61 tcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattttagttga 160  Q
    |||||||||||||  |||||| |||||||||| |||   ||||||||| |||||||||||||||||||||| |||||||| |||||| ||||||||||||    
T  24185782 tcctaataatgtgtctcactattattaaaaatattggtgatatttattgtccaagaaattgggataatttt-ataacaaaacaaattatattttagttga 24185684  T
Q  161 aaatggg 167  Q
    |||||||    
T  24185683 aaatggg 24185677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 167
Target Start/End: Original strand, 42722203 - 42722320
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||||  | |||||||||||||||       ||||||||||||||| ||||||||| |||||||||||| || |||||| |    
T  42722203 gggccctttgttcctaataatgtgtcttactaatattaaaaatacatgtgatatttattatccaaaaaattgggagaattttcataaccaaacaaattat 42722302  T
Q  150 attttagttgaaaatggg 167  Q
    ||||||||||||||||||    
T  42722303 attttagttgaaaatggg 42722320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 50 - 166
Target Start/End: Complemental strand, 28945948 - 28945832
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||||  | ||||||||||||||| |     ||||||||||||||  ||||||||| |||| |||||||||| |||||| |    
T  28945948 gggccctttgttcctaataatgtgtcttactaatattaaaaatatatgtgatatttattatccagaaaattgggagaattctcataacaaaacaaattat 28945849  T
Q  150 attttagttgaaaatgg 166  Q
    |||||||||||||||||    
T  28945848 attttagttgaaaatgg 28945832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 56 - 136
Target Start/End: Complemental strand, 47397650 - 47397570
Alignment:
Q  56 tttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataa 136  Q
    ||||||||||||||||||| ||||||||||||||||| | ||  ||||||||||||||||||||| |||||||||||||||    
T  47397650 tttgttcctaataatgtgcatcactaatattaaaaatatcgatgatatttattatccaagaaattcggataattttcataa 47397570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 26465116 - 26465202
Alignment:
Q  116 aaattgggataattttcataacaaa--gcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    |||| ||||||||||| ||||||||  |||||||||||||||||||||||| |||||  |||||||||||||||||| |||||||||    
T  26465116 aaatagggataatttttataacaaaaagcaaattctattttagttgaaaatagggtgctaaaatttcagtctacttcacatgtgcta 26465202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 50 - 153
Target Start/End: Original strand, 48646129 - 48646232
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    |||||||| |||  ||||||||||| ||||| ||||||||||| |||   ||||||||||||||| |||||||||||||||||| |||||| |||||| |    
T  48646129 gggcccttagtttataataatgtgcctcactgatattaaaaatattggtgatatttattatccaataaattgggataattttcaaaacaaaacaaattat 48646228  T
Q  150 attt 153  Q
    ||||    
T  48646229 attt 48646232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 50 - 166
Target Start/End: Original strand, 26221650 - 26221766
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    |||||||||||||||||||||||   | ||||||||||||||| |     ||||||||||||||| ||||||||| ||| ||||||||||| |||||  |    
T  26221650 gggccctttgttcctaataatgtatcttactaatattaaaaatatatgtgatatttattatccaaaaaattgggagaatcttcataacaaaacaaataat 26221749  T
Q  150 attttagttgaaaatgg 166  Q
    |||||||| ||||||||    
T  26221750 attttagtagaaaatgg 26221766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 44310430 - 44310518
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataaca 138  Q
    ||||| ||||||||||||||||||| ||||||||||| ||||| |||   ||||| |||||||| ||||||| ||||||||||||||||    
T  44310430 gggccgtttgttcctaataatgtgcctcactaatattgaaaatattggtgatattaattatccatgaaattgagataattttcataaca 44310518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 165
Target Start/End: Original strand, 41665592 - 41665692
Alignment:
Q  64 taataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaa 163  Q
    ||||||||||| ||||||||| ||||||  ||||  |||||||||||| |||||||||| | || |||| |||||||| ||||| |||||||||||||||    
T  41665592 taataatgtgcctcactaatactaaaaaa-ttgatgatatttattatctaagaaattggaaaaactttcctaacaaagtaaattatattttagttgaaaa 41665690  T
Q  164 tg 165  Q
    ||    
T  41665691 tg 41665692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 162
Target Start/End: Complemental strand, 12784098 - 12783987
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||| ||||| |||| |||||| ||||||||||||||||| |||    |||||||||||||| |||||| ||||||||| ||| |||| |||||| |    
T  12784098 gggccctatgttcttaattatgtgcctcactaatattaaaaatattggtagtatttattatccaaaaaattgcgataatttt-atagcaaaacaaattat 12784000  T
Q  150 attttagttgaaa 162  Q
    |||| ||| ||||    
T  12783999 atttaagtcgaaa 12783987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 47559629 - 47559565
Alignment:
Q  100 atatttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaatg 165  Q
    |||||||||||| || |||||||||||||||| |||||||| |||||| |||||||||| ||||||    
T  47559629 atatttattatcaaaaaaattgggataatttt-ataacaaaacaaattatattttagttaaaaatg 47559565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 17385470 - 17385407
Alignment:
Q  100 atatttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaat 164  Q
    |||||||||||| | ||||||| || ||||||||||||||| ||||||||||||| |||||||||    
T  17385470 atatttattatcta-gaaattgagacaattttcataacaaaacaaattctatttttgttgaaaat 17385407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 298
Target Start/End: Original strand, 25095358 - 25095392
Alignment:
Q  264 cagatgttgtctaaaaaacatttatttggtagtga 298  Q
    |||||||||||||||||||||||||||||||||||    
T  25095358 cagatgttgtctaaaaaacatttatttggtagtga 25095392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 298
Target Start/End: Original strand, 44310837 - 44310871
Alignment:
Q  264 cagatgttgtctaaaaaacatttatttggtagtga 298  Q
    |||||||||||||||||||||||||||||||||||    
T  44310837 cagatgttgtctaaaaaacatttatttggtagtga 44310871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 298
Target Start/End: Complemental strand, 8737804 - 8737770
Alignment:
Q  264 cagatgttgtctaaaaaacatttatttggtagtga 298  Q
    |||| ||||||||||||||||||||||||||||||    
T  8737804 cagaagttgtctaaaaaacatttatttggtagtga 8737770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 298
Target Start/End: Complemental strand, 23664022 - 23663988
Alignment:
Q  264 cagatgttgtctaaaaaacatttatttggtagtga 298  Q
    |||||||||||||||||| ||||||||||||||||    
T  23664022 cagatgttgtctaaaaaatatttatttggtagtga 23663988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 8e-64; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 28 - 200
Target Start/End: Complemental strand, 5578759 - 5578587
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  5578759 aagaaattggtgatatttttttgggccctttgttcctaataatgtgcttcactaatattaaaaatatcgacgatatttattatccaagaaattgggataa 5578660  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||| |||||    
T  5578659 ttttcataacaaagcaaattctattttagttgaaaatggggtgctaaaatttcagtctactttgcatatgcta 5578587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 53 - 200
Target Start/End: Original strand, 13490368 - 13490515
Alignment:
Q  53 ccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatt 152  Q
    |||||||||||||||||||| ||||||||||||||||||| | ||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  13490368 ccctttgttcctaataatgtacttcactaatattaaaaatatcgacaatatttattatccaagaaattgagatgattttcataacaaagcaaattctatt 13490467  T
Q  153 ttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||    
T  13490468 ttagttgaaaatggggtgctaaaatttcagtctacttcgcatgtgcta 13490515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 27 - 200
Target Start/End: Complemental strand, 13382752 - 13382579
Alignment:
Q  27 taagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggata 126  Q
    ||||||||||||||||       |||||||||  |||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||    
T  13382752 taagaaattggtgatatttttttgggccctttactcctaataatgtgcttcactaatattaaaaatatcgacgatatttattatccaagaaattgggata 13382653  T
Q  127 attttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    |||||| ||||||||||||||||||||||||||||||| |||||  ||||||||| |||||||| |||||||||    
T  13382652 attttcgtaacaaagcaaattctattttagttgaaaatagggtgccaaaatttcattctacttcacatgtgcta 13382579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 23962803 - 23962975
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       |||||||||||||||||||| |||||||| ||||||||||||| |  || |||||||||||||||||||||| |||||    
T  23962803 aagaaattggtgatatttttttgggccctttgttcctaataacgtgcttcattaatattaaaaatatcaacgatatttattatccaagaaattgagataa 23962902  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||| |||||||||    
T  23962903 ttttcataacaaagcaaattctattttagttgaaaatagggtgctaaaatttcagtctacttcacatgtgcta 23962975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 2676918 - 2677089
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       ||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||||||||||  ||||||    
T  2676918 aagaaattggtgatatttttttgggccctttgttcctaataatgtgcttcattaatattaaaaatatcgacgatatttattatccaagaaatgaggataa 2677017  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||||||||||||||||||||| |||||||||||||  ||||  |||||||||||||||||| |||||||||    
T  2677018 ttttcataacaaagcaaattcta-tttagttgaaaatatggtgctaaaatttcagtctacttcacatgtgcta 2677089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 54 - 200
Target Start/End: Complemental strand, 9409677 - 9409531
Alignment:
Q  54 cctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattt 153  Q
    ||||| ||||||||||||||||||||||||||||||||| | ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9409677 ccttttttcctaataatgtgcttcactaatattaaaaatatcgacgatattttttatccaagaaattgggataattttcataacaaagcaaattctattt 9409578  T
Q  154 tagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    |||||||||||||||||  ||||||| ||| |||   ||||||||||    
T  9409577 tagttgaaaatggggtgctaaaattttagtttaccatgcatgtgcta 9409531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 42879574 - 42879720
Alignment:
Q  54 cctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattt 153  Q
    ||||| |||||||||||||| |||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  42879574 cctttattcctaataatgtgtttcactaatattaaaaatattgacgatattttttatccaagaaattgggataatttttataacaaagcaaattctattt 42879673  T
Q  154 tagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    |||||||||||||||||  ||||||| ||| ||||  ||||||||||    
T  42879674 tagttgaaaatggggtgctaaaattttagtttactatgcatgtgcta 42879720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 50 - 195
Target Start/End: Original strand, 18889043 - 18889188
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    |||||||||| |||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||||| || ||| |||    
T  18889043 gggccctttgctcctaataatgtgcttcactaatattaaaaatatcgacgatatttattatccaagaaattgagataattttcataacagagaaaactct 18889142  T
Q  150 attttagttgaaaatggggtgtgaaaatttcagtctacttcgcatg 195  Q
    | ||||||||||||| |||||  |||||||||||||||||||||||    
T  18889143 agtttagttgaaaatagggtgctaaaatttcagtctacttcgcatg 18889188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 52 - 164
Target Start/End: Complemental strand, 13826347 - 13826235
Alignment:
Q  52 gccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctat 151  Q
    ||||||||||||||||||||||  ||||||||||||||||| | ||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13826347 gccctttgttcctaataatgtgtctcactaatattaaaaatatcgatgatatttattatccaagaaattgggataattttcataacaaaacaaattctat 13826248  T
Q  152 tttagttgaaaat 164  Q
    |||||||||||||    
T  13826247 tttagttgaaaat 13826235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 28 - 200
Target Start/End: Complemental strand, 39537540 - 39537378
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||| ||||||||||| | |||  ||||||||||| ||          |||    
T  39537540 aagaaattggtgatatttttttgggccctttgttcctaataatgtgcttcactgatattaaaaatatcgacgctatttattatcgaa----------taa 39537451  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||  ||||||||||| ||||||||||||||||    
T  39537450 ttttcataacaaagcaaattttattttagttgaaaatggggtgctaaaatttcagtttacttcgcatgtgcta 39537378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 52 - 167
Target Start/End: Original strand, 29789522 - 29789637
Alignment:
Q  52 gccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctat 151  Q
    ||||||||||||||| ||||||| ||||| |||| |||||| | |   ||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  29789522 gccctttgttcctaaaaatgtgcctcactgatataaaaaatatcggtgatatttattatccaagaaattggaataattttcataacaaaacaaattctat 29789621  T
Q  152 tttagttgaaaatggg 167  Q
    ||||||||||||||||    
T  29789622 tttagttgaaaatggg 29789637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 59 - 167
Target Start/End: Complemental strand, 13820989 - 13820881
Alignment:
Q  59 gttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattttagtt 158  Q
    |||||||||||||||  ||||||| ||||||||| |||  |||||||||||| ||||||||| ||||||||||||||||||| |||| ||||||||||||    
T  13820989 gttcctaataatgtgtctcactaacattaaaaatattggtcatatttattattcaagaaatttggataattttcataacaaaacaaaatctattttagtt 13820890  T
Q  159 gaaaatggg 167  Q
    |||||||||    
T  13820889 gaaaatggg 13820881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 67 - 165
Target Start/End: Complemental strand, 8806430 - 8806333
Alignment:
Q  67 taatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaatg 165  Q
    |||||||| ||||||||||||||||| ||   ||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||    
T  8806430 taatgtgcctcactaatattaaaaatatttgtcatatttattatccaagaaattgggataatttt-ataacaaaacaaattatattttagttgaaaatg 8806333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 20892388 - 20892294
Alignment:
Q  58 tgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatt 152  Q
    ||||||||||||||||| ||||||||||||||||| ||||  ||||||||| |||||||| ||||||||||||||| |||||| |||||||||||    
T  20892388 tgttcctaataatgtgcctcactaatattaaaaatattgatgatatttattttccaagaatttgggataattttcaaaacaaaacaaattctatt 20892294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 164
Target Start/End: Complemental strand, 38915843 - 38915730
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||||| |||||||||||||| || ||   ||||||||||||||||||||||||||||||||| ||||||||  ||  | |    
T  38915843 gggccctttgttcctaataatgtgcctcactaatattaaatatattagtcatatttattatccaagaaattgggataatttt-ataacaaaaaaatatat 38915745  T
Q  150 attttagttgaaaat 164  Q
    |||||||||||||||    
T  38915744 attttagttgaaaat 38915730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 29149634 - 29149741
Alignment:
Q  56 tttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatttta 155  Q
    ||||||||||||||||||| ||| ||||||||||||| ||    ||||||||||||||| |||||| ||||||||||||||| ||||||||| |||||||    
T  29149634 tttgttcctaataatgtgcctcattaatattaaaaatatttgtgatatttattatccaaaaaattgagataattttcataac-aagcaaattttatttta 29149732  T
Q  156 gttgaaaat 164  Q
    |||||||||    
T  29149733 gttgaaaat 29149741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 167
Target Start/End: Complemental strand, 16040315 - 16040198
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||||  |||||||| | |||||| |||   |||||| ||||| ||||||||| |||||||||||||||||| |||||  |    
T  16040315 gggccctttgttcctaataatgtgtctcactaatttaaaaaatattggtgatattttttatcaaagaaattgagataattttcataacaaaacaaatctt 16040216  T
Q  150 attttagttgaaaatggg 167  Q
    |||||| |||||||||||    
T  16040215 attttaattgaaaatggg 16040198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 167
Target Start/End: Original strand, 38491012 - 38491129
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||||  | ||||||||||||||| |     ||||||||||||||  ||||| ||| ||||||||||||||| |||||| |    
T  38491012 gggccctttgttcctaataatgtgtcttactaatattaaaaatatatgtgatatttattatccagaaaattaggagaattttcataacaaaacaaattat 38491111  T
Q  150 attttagttgaaaatggg 167  Q
    ||||||||||||||||||    
T  38491112 attttagttgaaaatggg 38491129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 50 - 166
Target Start/End: Original strand, 7850280 - 7850396
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||||  | ||||||||||||||| |     ||||||||||||||  |||||| || ||||||||||||||| |||||| |    
T  7850280 gggccctttgttcctaataatgtgtcttactaatattaaaaatatatgtgatatttattatccagaaaattgagagaattttcataacaaaacaaattat 7850379  T
Q  150 attttagttgaaaatgg 166  Q
    |||||||||||||||||    
T  7850380 attttagttgaaaatgg 7850396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 164
Target Start/End: Complemental strand, 5121316 - 5121205
Alignment:
Q  53 ccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatt 152  Q
    |||||||||||||||||||||  ||| ||||||||||||| |||   ||||||||||||||| ||||||  ||||||||||||| ||| |||||| ||||    
T  5121316 ccctttgttcctaataatgtggctcaataatattaaaaatattggtgatatttattatccaaaaaattgaaataattttcataataaaacaaattttatt 5121217  T
Q  153 ttagttgaaaat 164  Q
    ||| ||||||||    
T  5121216 ttaattgaaaat 5121205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 50 - 164
Target Start/End: Complemental strand, 6769489 - 6769378
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    |||||||||||| |||||||||||| ||| |||||||||| || |||| ||||||||||||||||||||||  || |||||| |||||||| |||||| |    
T  6769489 gggccctttgtttctaataatgtgcctcaataatattaaatatattgatcatatttattatccaagaaatt--gagaatttt-ataacaaaacaaattat 6769393  T
Q  150 attttagttgaaaat 164  Q
    ||||||||| |||||    
T  6769392 attttagttaaaaat 6769378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 55 - 140
Target Start/End: Complemental strand, 43171523 - 43171438
Alignment:
Q  55 ctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaa 140  Q
    |||| ||||||||||||||||||||||||||||||||| |||   ||||||||||||||| | |||| ||||||||||||||||||    
T  43171523 cttttttcctaataatgtgcttcactaatattaaaaatattggtgatatttattatccaatatattgagataattttcataacaaa 43171438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 37134753 - 37134817
Alignment:
Q  100 atatttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaat 164  Q
    |||||||||||| |||||||||| ||||||||||||||||| |||||| ||||||||||||||||    
T  37134753 atatttattatctaagaaattggaataattttcataacaaaacaaattatattttagttgaaaat 37134817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 166
Target Start/End: Original strand, 3654677 - 3654762
Alignment:
Q  80 taatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaatgg 166  Q
    ||||||||||||| ||||  |||||||||||||||||||||  ||||||||| || |||||  ||||| ||||||||||||||||||    
T  3654677 taatattaaaaatattgatgatatttattatccaagaaattaagataatttt-attacaaaataaattatattttagttgaaaatgg 3654762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 298
Target Start/End: Complemental strand, 5578523 - 5578489
Alignment:
Q  264 cagatgttgtctaaaaaacatttatttggtagtga 298  Q
    |||||||||||||||||||||||||||||||||||    
T  5578523 cagatgttgtctaaaaaacatttatttggtagtga 5578489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 167
Target Start/End: Original strand, 32698734 - 32698849
Alignment:
Q  51 ggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattcta 150  Q
    |||| ||||||| ||||||||||  ||||||||  ||||| | |||   |||||||||||| ||||||||| || ||| ||| ||||||| ||||   ||    
T  32698734 ggccatttgttcttaataatgtgtctcactaattataaaa-tattggtaatatttattatctaagaaattgtgagaatcttcgtaacaaaacaaacgata 32698832  T
Q  151 ttttagttgaaaatggg 167  Q
    |||||||||||||||||    
T  32698833 ttttagttgaaaatggg 32698849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 298
Target Start/End: Complemental strand, 9409475 - 9409441
Alignment:
Q  264 cagatgttgtctaaaaaacatttatttggtagtga 298  Q
    |||||||| ||||||||||||||||||||||||||    
T  9409475 cagatgttatctaaaaaacatttatttggtagtga 9409441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 27861950 - 27861800
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27861950 gggccctttgttcctaataatgtacttcactaatattaaaaatatcgacaatatttattatccaagaaattggaataattttcataacaaagcaaattct 27861851  T
Q  150 attttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  27861850 attttagttgaaaatggggtgctaaaatttcagtctacttcgcatgtgcta 27861800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 50 - 200
Target Start/End: Original strand, 2554031 - 2554181
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||| ||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  2554031 gggccctttgttcttaataatgtgcttcactaatattaaaaatatcgacgatatttattatccaagaaattgagataattttcattacaaagcaaattct 2554130  T
Q  150 attttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    |||||| ||||||||||||||  |||||||||||||||||| |||||||||    
T  2554131 attttatttgaaaatggggtgctaaaatttcagtctacttcacatgtgcta 2554181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 44314172 - 44314022
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    |||||||||||||||||| |||||||||| ||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44314172 gggccctttgttcctaattatgtgcttcattaatattaaaaatatcgacgatatttattatccaagaaattgagataattttcataacaaagcaaattct 44314073  T
Q  150 attttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||||||||||||| |||||  |||||||||||||||||| ||| |||||    
T  44314072 attttagttgaaaatagggtgctaaaatttcagtctacttcacatttgcta 44314022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 44322351 - 44322201
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    |||||||||||||||||| |||||||||| ||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44322351 gggccctttgttcctaattatgtgcttcattaatattaaaaatatcgacgatatttattatccaagaaattgagataattttcataacaaagcaaattct 44322252  T
Q  150 attttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||||||||||||| |||||  |||||||||||||||||| ||| |||||    
T  44322251 attttagttgaaaatagggtgctaaaatttcagtctacttcacatatgcta 44322201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 28 - 200
Target Start/End: Complemental strand, 33015344 - 33015172
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       |||||||||||| ||||||| |||||||| ||||||||||||| | ||| ||||||||||||||| |||| |||||||    
T  33015344 aagaaattggtgatatttttttgggccctttgtttctaataaagtgcttcattaatattaaaaatatcgacgatatttattatccaataaatggggataa 33015245  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||| |||||||||    
T  33015244 ttttcataacaaagcaaattctattttagttgaaaatagggtgctaaaatttcagtctacttcacatgtgcta 33015172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 22576113 - 22575963
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||| ||| ||||||||||||||||| | ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22576113 gggccctttgttcctaataatttgcctcactaatattaaaaatatcgacgatatttattatccaaaaaattgggataattttcataacaaagcaaattct 22576014  T
Q  150 attttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    |||||||||||||||||||||  ||||||| ||| ||||| | ||||||||    
T  22576013 attttagttgaaaatggggtgctaaaattttagtttactttgaatgtgcta 22575963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 41826093 - 41825943
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||| ||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||| |||||||||||| ||||| ||||||||    
T  41826093 gggccctttgttcttaataatgtgcttcactaatattaaaaatatcgacgatatttattatccaagaaattgagataattttcattacaaaacaaattct 41825994  T
Q  150 attttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    |||||| ||||||||||||||  |||||||| ||||||||| |||||||||    
T  41825993 attttatttgaaaatggggtgctaaaatttcggtctacttcacatgtgcta 41825943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 19685746 - 19685916
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       |||||||||| ||||||||||||||||||||||||||||| || | ||| ||||||||||||||||||||||||||||    
T  19685746 aagaaattggtgatatttttttgggccctttgctcctaataatgtgcttcactaatattaaacatatcgacgatatttattatccaagaaattgggataa 19685845  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||| ||||  ||||||||||||||||||||||||| | |||  |||||||||||||||||| |||||||||    
T  19685846 ttttcgtaac--agcaaattctattttagttgaaaatagagtgctaaaatttcagtctacttcacatgtgcta 19685916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 51 - 200
Target Start/End: Original strand, 6221362 - 6221511
Alignment:
Q  51 ggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattcta 150  Q
    |||| ||||||||||||||||||||||| ||||||||||||| |  || ||||||||||||||||||||  |||||||||||||||||||| ||||||||    
T  6221362 ggccttttgttcctaataatgtgcttcattaatattaaaaatatctacgatatttattatccaagaaatgaggataattttcataacaaagtaaattcta 6221461  T
Q  151 ttttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    |||||||| ||||| |||||  |||||||||||||||||| |||||||||    
T  6221462 ttttagttaaaaatagggtgctaaaatttcagtctacttcacatgtgcta 6221511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 50 - 162
Target Start/End: Complemental strand, 38566328 - 38566216
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||| ||||||||||||||||||| ||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  38566328 gggccatttgttcctaataatgtgcgtcactaatattaaaaatattggtgatatttattatccaagaaattgggataattttcataacaaaacaaattat 38566229  T
Q  150 attttagttgaaa 162  Q
    |||||||||||||    
T  38566228 attttagttgaaa 38566216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 33054748 - 33054862
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||   ||||||||||||||| |||||  |||||||||||||||||| |||||| |    
T  33054748 gggccctttgttcctaataatgtgcttcactaatattaaaaatattggtgatatttattatccaataaattatgataattttcataacaaaacaaattat 33054847  T
Q  150 attttagttgaaaat 164  Q
    |||||||||||||||    
T  33054848 attttagttgaaaat 33054862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 50 - 167
Target Start/End: Complemental strand, 19091312 - 19091195
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||||| ||| ||||||||||||| |||   |||||||||||| |||||||| | ||||||||||||||||| |||||| |    
T  19091312 gggccctttgttcctaataatgtgcctcaataatattaaaaatattggtgatatttattatctaagaaatttgtataattttcataacaaaacaaattat 19091213  T
Q  150 attttagttgaaaatggg 167  Q
    ||||||||||||||||||    
T  19091212 attttagttgaaaatggg 19091195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 41302576 - 41302463
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||| ||||||||||| |||||||||||| |||| |||   ||||||||||||||| ||||||||||||||||||||||||| |||||| |    
T  41302576 gggccctttgttcgtaataatgtgcctcactaatattacaaatattgttgatatttattatccaaaaaattgggataattttcataacaaaacaaattat 41302477  T
Q  150 attttagttgaaaa 163  Q
    ||||||||| ||||    
T  41302476 attttagttcaaaa 41302463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 38423087 - 38422950
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       ||||||||||||||||||||||||| ||||||||  ||||||| ||||  |||||||||||||||||||||| || ||    
T  38423087 aagaaattggtgatatatttttgggccctttgttcctaataatgtgcctcactaattataaaaatattgatgatatttattatccaagaaattgagagaa 38422988  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatg 165  Q
    | ||||||||||| |||||  |||||||||||||||||    
T  38422987 tcttcataacaaaacaaatgatattttagttgaaaatg 38422950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 57 - 162
Target Start/End: Original strand, 10022892 - 10022997
Alignment:
Q  57 ttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattttag 156  Q
    |||||||||||||||||| |||||||||| |||||| |||   |||||||||||||||||||||| |||||||||||||||||| |||| | ||||||||    
T  10022892 ttgttcctaataatgtgcctcactaatataaaaaatattggggatatttattatccaagaaattgagataattttcataacaaaacaaaatatattttag 10022991  T
Q  157 ttgaaa 162  Q
    ||||||    
T  10022992 ttgaaa 10022997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 50 - 167
Target Start/End: Complemental strand, 11199414 - 11199297
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||| | ||  ||||||||||| |||||||||| ||| ||||||| | |||| ||||||||    
T  11199414 gggccttttgttcctaataatgtgcctcattaatattaaaaatatcgatgatatttattatgcaagaaattgagatgattttcaaagcaaaacaaattct 11199315  T
Q  150 attttagttgaaaatggg 167  Q
    ||||||||||||||||||    
T  11199314 attttagttgaaaatggg 11199297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 50 - 165
Target Start/End: Original strand, 24484451 - 24484566
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||| ||||||||||||||||||| | ||||||||||||||| ||    ||||||||||||||||||||||  ||||||| ||||||||| |||||| |    
T  24484451 gggccttttgttcctaataatgtgcctaactaatattaaaaatatttgtgatatttattatccaagaaattgaaataatttacataacaaaacaaattat 24484550  T
Q  150 attttagttgaaaatg 165  Q
    ||||||||||||||||    
T  24484551 attttagttgaaaatg 24484566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 14903999 - 14904113
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    |||||| || ||||||||||||||||||||||||||||||||| ||    |||||||||||||||  |||| ||||||||||||| ||||| |||||| |    
T  14903999 gggcccattattcctaataatgtgcttcactaatattaaaaatattcgtgatatttattatccaatgaattaggataattttcatgacaaaacaaattat 14904098  T
Q  150 attttagttgaaaat 164  Q
    |||||||||||||||    
T  14904099 attttagttgaaaat 14904113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 41423004 - 41422922
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttc 132  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||   ||||||||||||||||||| |||||||||||||    
T  41423004 gggccctttgttcctaataatgtgcttcactaatattaaaaatattggtgatatttattatccaagaaactgggataattttc 41422922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 50 - 167
Target Start/End: Complemental strand, 7880488 - 7880371
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||||  | ||||||||||||||| |     ||||||||||||||  ||||||||| ||||||||||||||| |||||| |    
T  7880488 gggccctttgttcctaataatgtgtcttactaatattaaaaatatatgtgatatttattatccagaaaattgggagaattttcataacaaaacaaattat 7880389  T
Q  150 attttagttgaaaatggg 167  Q
    ||||||||||||||||||    
T  7880388 attttagttgaaaatggg 7880371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 64 - 165
Target Start/End: Complemental strand, 13597989 - 13597889
Alignment:
Q  64 taataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaa 163  Q
    ||||||||||| || |||||||||||||| |||  |||||||||||||||||||| |||||||||||| |||||||| |||||| |||||||||||||||    
T  13597989 taataatgtgcctcgctaatattaaaaatattggtcatatttattatccaagaaaatgggataatttt-ataacaaaacaaattatattttagttgaaaa 13597891  T
Q  164 tg 165  Q
    ||    
T  13597890 tg 13597889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 167
Target Start/End: Original strand, 30386835 - 30386945
Alignment:
Q  56 tttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatttta 155  Q
    ||||||||||||||||||  ||||||||||||||||| | |   ||||||||||||||||||||| |||||||||| |||||||| |||||| |||||||    
T  30386835 tttgttcctaataatgtgtctcactaatattaaaaatatcggtgatatttattatccaagaaattaggataatttt-ataacaaaacaaattatatttta 30386933  T
Q  156 gttgaaaatggg 167  Q
    ||| ||||||||    
T  30386934 gttaaaaatggg 30386945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 50 - 164
Target Start/End: Complemental strand, 45277620 - 45277506
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||||  | ||||||||||||||| |     ||||||||||||||  ||||||||| ||||||||||||||| |||||| |    
T  45277620 gggccctttgttcctaataatgtgtcttactaatattaaaaatatatgtgatatttattatccagaaaattgggagaattttcataacaaaacaaattat 45277521  T
Q  150 attttagttgaaaat 164  Q
    |||||||||||||||    
T  45277520 attttagttgaaaat 45277506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 50 - 167
Target Start/End: Original strand, 19677994 - 19678111
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    |||||||||||| |||||||||||  | ||||||||||||||| |     ||||||||||||||  ||||||||| |||| |||||||||| |||||| |    
T  19677994 gggccctttgtttctaataatgtgtcttactaatattaaaaatatatgtgatatttattatccagaaaattgggagaattctcataacaaaacaaattat 19678093  T
Q  150 attttagttgaaaatggg 167  Q
    ||||||||||||||||||    
T  19678094 attttagttgaaaatggg 19678111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 6882973 - 6883088
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataac--aaagcaaatt 147  Q
    ||||| ||||||| ||||||||||  |||| |||||||||||| |||   ||| |||||||||||||||||| |||||||||||||||  |||  |||||    
T  6882973 gggccatttgttcttaataatgtgtctcacaaatattaaaaatattggtgatacttattatccaagaaattgagataattttcataacaaaaaaaaaatt 6883072  T
Q  148 ctattttagttgaaaa 163  Q
     |||||||||||||||    
T  6883073 atattttagttgaaaa 6883088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 55 - 161
Target Start/End: Original strand, 9057380 - 9057484
Alignment:
Q  55 ctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatttt 154  Q
    ||||||| |||||||||||| ||||||| |||||| || |||  ||||||||||||||||||||||| ||||||||| || ||||| |||||| ||||||    
T  9057380 ctttgtttctaataatgtgcctcactaaaattaaatatattggtcatatttattatccaagaaattgagataatttt-at-acaaaacaaattatatttt 9057477  T
Q  155 agttgaa 161  Q
    | |||||    
T  9057478 aattgaa 9057484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 167
Target Start/End: Original strand, 2565587 - 2565704
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    |||||||||||||||||||||||   | ||||||||||||||| |     ||||||||||||||  ||||||||| ||| ||||||||||| |||||  |    
T  2565587 gggccctttgttcctaataatgtatcttactaatattaaaaatatatgtgatatttattatccagaaaattgggagaatcttcataacaaaacaaataat 2565686  T
Q  150 attttagttgaaaatggg 167  Q
    |||||||| |||||||||    
T  2565687 attttagtagaaaatggg 2565704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 167
Target Start/End: Original strand, 29303144 - 29303259
Alignment:
Q  52 gccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctat 151  Q
    ||||||| ||||||||||||||  | ||||||||||||||| |     ||||||||||||||  ||||||||| |||| | | |||||| |||||| |||    
T  29303144 gccctttattcctaataatgtgtcttactaatattaaaaatatatgtgatatttattatccagaaaattgggagaattctaagaacaaaacaaattatat 29303243  T
Q  152 tttagttgaaaatggg 167  Q
    ||||||||||||||||    
T  29303244 tttagttgaaaatggg 29303259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 165
Target Start/End: Complemental strand, 41422921 - 41422863
Alignment:
Q  107 ttatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaatg 165  Q
    |||||||||||||||| |||||||||||||||||  ||||| |||||||||||||||||    
T  41422921 ttatccaagaaattggaataattttcataacaaaataaattatattttagttgaaaatg 41422863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 57 - 166
Target Start/End: Original strand, 25621421 - 25621529
Alignment:
Q  57 ttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattttag 156  Q
    ||||||||| | |||||||||||||||||||| ||| ||    ||| ||||||||||| |||||| || | |||||||| |||| |||||| ||||||||    
T  25621421 ttgttcctacttatgtgcttcactaatattaacaatattagtgatacttattatccaataaattgagaca-ttttcatagcaaaacaaattatattttag 25621519  T
Q  157 ttgaaaatgg 166  Q
    ||||||||||    
T  25621520 ttgaaaatgg 25621529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 167
Target Start/End: Complemental strand, 18781308 - 18781194
Alignment:
Q  53 ccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatt 152  Q
    ||||||||| ||||||||||   | ||||||||||||||| |     ||||||||||||||  ||||||||| ||| ||||||||||| |||||  ||||    
T  18781308 ccctttgttactaataatgtatcttactaatattaaaaatatatgtgatatttattatccagaaaattgggagaatcttcataacaaaacaaataatatt 18781209  T
Q  153 ttagttgaaaatggg 167  Q
    ||||| |||||||||    
T  18781208 ttagtagaaaatggg 18781194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 9425278 - 9425217
Alignment:
Q  102 atttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaa 163  Q
    |||||||||||||||||||| || ||| ||||||||||| |||||  |||||||||||||||    
T  9425278 atttattatccaagaaattgagagaatcttcataacaaaacaaatgatattttagttgaaaa 9425217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 166
Target Start/End: Complemental strand, 25416117 - 25416074
Alignment:
Q  123 gataattttcataacaaagcaaattctattttagttgaaaatgg 166  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||    
T  25416117 gataattttgataacaaagcaaattatattttagttgaaaatgg 25416074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 31549236 - 31549172
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaat 92  Q
    |||||||||||||||       ||||| ||||||||||||||||||| |||||||||||||||||    
T  31549236 aagaaattggtgatatttttttgggccatttgttcctaataatgtgcctcactaatattaaaaat 31549172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 163
Target Start/End: Complemental strand, 43673397 - 43673290
Alignment:
Q  56 tttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatttta 155  Q
    ||||||| ||||||||||| ||| ||||  ||||||| ||||  ||||||||||||| ||||||   || ||| ||| ||||||| |||||| ||||| |    
T  43673397 tttgttcataataatgtgcctcaataattataaaaatattgatgatatttattatccgagaaatatagagaatcttcctaacaaaacaaattatatttga 43673298  T
Q  156 gttgaaaa 163  Q
    ||||||||    
T  43673297 gttgaaaa 43673290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 298
Target Start/End: Original strand, 2554245 - 2554279
Alignment:
Q  264 cagatgttgtctaaaaaacatttatttggtagtga 298  Q
    |||||||||||||||||||||||||||||||||||    
T  2554245 cagatgttgtctaaaaaacatttatttggtagtga 2554279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 298
Target Start/End: Original strand, 7444111 - 7444145
Alignment:
Q  264 cagatgttgtctaaaaaacatttatttggtagtga 298  Q
    |||||||||||||||||||||||||||||||||||    
T  7444111 cagatgttgtctaaaaaacatttatttggtagtga 7444145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 298
Target Start/End: Complemental strand, 41825879 - 41825845
Alignment:
Q  264 cagatgttgtctaaaaaacatttatttggtagtga 298  Q
    |||||||||||||||||||||||||||||||||||    
T  41825879 cagatgttgtctaaaaaacatttatttggtagtga 41825845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 25416163 - 25416124
Alignment:
Q  53 ccctttgttcctaataatgtgcttcactaatattaaaaat 92  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  25416163 ccctttgttcctaataatgtgtctcactaatattaaaaat 25416124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 298
Target Start/End: Complemental strand, 27861741 - 27861707
Alignment:
Q  264 cagatgttgtctaaaaaacatttatttggtagtga 298  Q
    |||||||||||||||||| ||||||||||||||||    
T  27861741 cagatgttgtctaaaaaatatttatttggtagtga 27861707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 1981549 - 1981721
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       |||| |||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  1981549 aagaaattggtgatatttttttgggctctttgttcctaataatgtgcttcattaatattaaaaatattgacgatatttattatccaagaaattgggataa 1981648  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||| ||| |||||    
T  1981649 ttttcataacaaagcaaattctattttagttgaaaatagggtgctaaaatttcagtctacttcacatatgcta 1981721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 3762650 - 3762822
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       |||||||||||||||||||||||| |||||||||||||||||| |  || ||||||||||||||||||||||||||||    
T  3762650 aagaaattggtgatatttttttgggccctttgttcctaataatgtgtttcactaatattaaaaatatctacgatatttattatccaagaaattgggataa 3762749  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||| |||||||||    
T  3762750 ttttcataacaaagcaaattctattttagttgaaaatagggtgctaaaatttcagtctacttcacatgtgcta 3762822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 45117419 - 45117591
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       |||||||||||||||||||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  45117419 aagaaattggtgatatttttttgggccctttgttcctaataatgtgcttcgctaatattaaaaatatcgacgatatttattatccaagaaattgggataa 45117518  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    |||||||||||||||||||| |||||||||||||||| |||||  |||||||||||||||||||||| |||||    
T  45117519 ttttcataacaaagcaaattatattttagttgaaaatagggtgctaaaatttcagtctacttcgcatttgcta 45117591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 16729683 - 16729855
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       ||||||||| ||| ||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  16729683 aagaaattggtgatatttttttgggcccttttttcttaataatgtgcttcactaatattaaaaatatcgacgatatttattatccaagaaattgggataa 16729782  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||| |||||||||||||||||||||||||||||||||| |   ||||||||||||||||||||||||||||    
T  16729783 ttttcttaacaaagcaaattctattttagttgaaaatgggctactaaaatttcagtctacttcgcatgtgcta 16729855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 31597475 - 31597647
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       |||||||||  |||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  31597475 aagaaattggtgatatttttttgggccctttactcctaataatgtgcttcactaatattaaaaatatcgacgatatttattatccaagaaattgggataa 31597574  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||||||||||||||||||||||||||||||||||| |||||  ||||||||| |||||||| |||||||||    
T  31597575 ttttcataacaaagcaaattctattttagttgaaaatagggtgccaaaatttcattctacttcacatgtgcta 31597647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 4432201 - 4432051
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||| ||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4432201 gggccgtttgttcctaataatgtacttcactaatattaaaaatattgacaatatttattatccaagaaattgggataattttcataacaaagcaaatttt 4432102  T
Q  150 attttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||||||||||||||  |||  ||||||| ||||||||||||||||||||    
T  4432101 attttagttgaaaatgaagtgctaaaatttaagtctacttcgcatgtgcta 4432051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 53 - 200
Target Start/End: Original strand, 40971420 - 40971567
Alignment:
Q  53 ccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatt 152  Q
    |||||||||| |||||||||| |||||||||||||||||| | ||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  40971420 ccctttgttcttaataatgtgtttcactaatattaaaaatatcgacgatatttattatccaagaaattgagataattttcattacaaagcaaattctatt 40971519  T
Q  153 ttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||| ||||||||||||||  |||||||||||||||||| |||||||||    
T  40971520 ttatttgaaaatggggtgctaaaatttcagtctacttcacatgtgcta 40971567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 54 - 200
Target Start/End: Complemental strand, 7973106 - 7972960
Alignment:
Q  54 cctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattt 153  Q
    |||||||| |||||||||||||||||||||||||||||| | ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7973106 cctttgtttctaataatgtgcttcactaatattaaaaatatcgacgatattttttatccaagaaattgggataattttcataacaaagcaaattctattt 7973007  T
Q  154 tagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    |||||||||||||||||  ||||||| ||| |||   ||||||||||    
T  7973006 tagttgaaaatggggtgctaaaattttagtttaccatgcatgtgcta 7972960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 54 - 187
Target Start/End: Original strand, 39906226 - 39906359
Alignment:
Q  54 cctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattt 153  Q
    ||||||||||||||||||||||||||||||||||||||| | |||  |||||||||||||| ||||||| |||||||| |||||||||||||||||||||    
T  39906226 cctttgttcctaataatgtgcttcactaatattaaaaatatcgacgttatttattatccaataaattggaataatttttataacaaagcaaattctattt 39906325  T
Q  154 tagttgaaaatggggtgtgaaaatttcagtctac 187  Q
    |||||||||||||||||  |||||||||||||||    
T  39906326 tagttgaaaatggggtgctaaaatttcagtctac 39906359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 7263761 - 7263611
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||| |||||||||||||| |||||||||||||| | ||| |||||||||||||||||||||| |||||||||||| |||||| |||||||    
T  7263761 gggccctttgttcttaataatgtgcttcgctaatattaaaaatatcgacgatatttattatccaagaaattgagataattttcattacaaagtaaattct 7263662  T
Q  150 attttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    |||||| |||| |||||||||  ||||||||||||| ||||| ||||||||    
T  7263661 attttatttgataatggggtgctaaaatttcagtctgcttcggatgtgcta 7263611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 50 - 165
Target Start/End: Original strand, 9137509 - 9137625
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattg-ggataattttcataacaaagcaaattc 148  Q
    ||||||||||||||||||||||||  ||||||||||||||||| |||   |||||||||||||||||||||| ||||||||||||||||||| ||||||     
T  9137509 gggccctttgttcctaataatgtgtctcactaatattaaaaatattggtgatatttattatccaagaaattgtggataattttcataacaaaacaaatta 9137608  T
Q  149 tattttagttgaaaatg 165  Q
    |||||||||||||||||    
T  9137609 tattttagttgaaaatg 9137625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 53 - 166
Target Start/End: Complemental strand, 9382351 - 9382238
Alignment:
Q  53 ccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatt 152  Q
    |||||| ||||||||||||||||||||||||||||||||| |||   ||||||| |||| ||  |||||||||||||||||||||||| |||||| ||||    
T  9382351 ccctttattcctaataatgtgcttcactaatattaaaaatattggtgatatttactatctaatgaattgggataattttcataacaaaacaaattatatt 9382252  T
Q  153 ttagttgaaaatgg 166  Q
    ||||||||||||||    
T  9382251 ttagttgaaaatgg 9382238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 50 - 165
Target Start/End: Complemental strand, 24190474 - 24190359
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    |||| |||||||| ||||| | ||| ||| ||||||||||||| ||||  |||||||||||||||||||||||||||||||| |||||||| |||||| |    
T  24190474 gggctctttgttcataatattatgcctcagtaatattaaaaatattgatgatatttattatccaagaaattgggataatttttataacaaaacaaattat 24190375  T
Q  150 attttagttgaaaatg 165  Q
    ||||||||||||||||    
T  24190374 attttagttgaaaatg 24190359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 56 - 166
Target Start/End: Complemental strand, 11648876 - 11648767
Alignment:
Q  56 tttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatttta 155  Q
    ||||||||||||||||||| ||||||||||||||||| |||   |||||||||||| ||||||||| ||||||||| |||||||| |||||| |||||||    
T  11648876 tttgttcctaataatgtgcctcactaatattaaaaatattggtgatatttattatcaaagaaattgagataatttt-ataacaaaacaaattatatttta 11648778  T
Q  156 gttgaaaatgg 166  Q
    |||||||||||    
T  11648777 gttgaaaatgg 11648767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 50 - 164
Target Start/End: Complemental strand, 6927675 - 6927561
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||||  | ||||||||||||||| |     ||||||||||||||  ||||||||| ||||||||||||||| |||||| |    
T  6927675 gggccctttgttcctaataatgtgtcttactaatattaaaaatatatgtgatatttattatccagaaaattgggagaattttcataacaaaacaaattat 6927576  T
Q  150 attttagttgaaaat 164  Q
    |||||||||||||||    
T  6927575 attttagttgaaaat 6927561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 167
Target Start/End: Original strand, 28509226 - 28509343
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||||  | ||||||||||||||| |     ||||||||||||||  ||||| ||| ||||||||||||||| |||||| |    
T  28509226 gggccctttgttcctaataatgtgtcttactaatattaaaaatatatgtgatatttattatccagaaaattaggagaattttcataacaaaacaaattat 28509325  T
Q  150 attttagttgaaaatggg 167  Q
    ||||||||||||||||||    
T  28509326 attttagttgaaaatggg 28509343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 166
Target Start/End: Original strand, 32073246 - 32073349
Alignment:
Q  63 ctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaa 162  Q
    |||||||||||  ||||||||||||||||| |||   |||||||||||||||||||||| |||||| ||   |||||| | |||| ||||||||||||||    
T  32073246 ctaataatgtgtctcactaatattaaaaatattggtgatatttattatccaagaaattgtgataatctttgcaacaaaacgaattatattttagttgaaa 32073345  T
Q  163 atgg 166  Q
    ||||    
T  32073346 atgg 32073349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 50 - 167
Target Start/End: Complemental strand, 2879346 - 2879229
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    |||||||||||| ||||||||||   | ||||||||||||||| |     ||||||||||||||  ||||||||| ||| ||||||||||| |||||  |    
T  2879346 gggccctttgtttctaataatgtatcttactaatattaaaaatatatgtgatatttattatccagaaaattgggagaatcttcataacaaaacaaataat 2879247  T
Q  150 attttagttgaaaatggg 167  Q
    |||||||| |||||||||    
T  2879246 attttagtagaaaatggg 2879229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 166
Target Start/End: Complemental strand, 2807817 - 2807702
Alignment:
Q  51 ggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattcta 150  Q
    |||||||||||| ||||||||||  | ||||||||||||||| ||    ||| ||||||||||  |||||| || ||| |||| ||| || |||||| ||    
T  2807817 ggccctttgttcataataatgtgtcttactaatattaaaaatatttgtgataattattatccagaaaattgtgagaatcttcacaacgaaacaaattata 2807718  T
Q  151 ttttagttgaaaatgg 166  Q
    ||||||||||||||||    
T  2807717 ttttagttgaaaatgg 2807702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 164
Target Start/End: Original strand, 24682594 - 24682704
Alignment:
Q  54 cctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattt 153  Q
    ||||||||||||||||||||  | ||||||||||| ||| ||    |||||||||||| |  ||||||||| ||| |||||||| || |||||| |||||    
T  24682594 cctttgttcctaataatgtgtcttactaatattaagaatatttgtgatatttattatctagaaaattgggaaaatattcataacgaaacaaattatattt 24682693  T
Q  154 tagttgaaaat 164  Q
    |||| ||||||    
T  24682694 tagtcgaaaat 24682704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 28374688 - 28374579
Alignment:
Q  54 cctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattt 153  Q
    |||||||| |||| ||||||  ||| ||||||||||||| |||   ||||||||||| ||||||||| | |||||||| ||||| ||  ||||| |||||    
T  28374688 cctttgttgctaagaatgtgtctcattaatattaaaaatattgtg-atatttattattcaagaaatttgaataatttt-ataaccaaataaattatattt 28374591  T
Q  154 tagttgaaaatg 165  Q
    ||||||||||||    
T  28374590 tagttgaaaatg 28374579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 602316 - 602275
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaa 91  Q
    ||||||||||||| ||||||||||| ||||||||||||||||    
T  602316 gggccctttgttcttaataatgtgcctcactaatattaaaaa 602275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 298
Target Start/End: Complemental strand, 7972896 - 7972862
Alignment:
Q  264 cagatgttgtctaaaaaacatttatttggtagtga 298  Q
    |||||||| ||||||||||||||||||||||||||    
T  7972896 cagatgttatctaaaaaacatttatttggtagtga 7972862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 165
Target Start/End: Complemental strand, 23232351 - 23232238
Alignment:
Q  52 gccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataa-caaagcaaattcta 150  Q
    |||||||||| |||||| ||||| || | |||||||||||| |||   |||||||||||  |||||||| |||||| ||| |||| ||||  ||||| ||    
T  23232351 gccctttgtttctaatattgtgcctcgccaatattaaaaatattggtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattata 23232253  T
Q  151 ttttagttgaaaatg 165  Q
    ||||| |||||||||    
T  23232252 ttttaattgaaaatg 23232238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 294
Target Start/End: Original strand, 40971616 - 40971646
Alignment:
Q  264 cagatgttgtctaaaaaacatttatttggta 294  Q
    |||||||||||||||||||||||||||||||    
T  40971616 cagatgttgtctaaaaaacatttatttggta 40971646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 28 - 200
Target Start/End: Complemental strand, 10095173 - 10095001
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       |||| |||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  10095173 aagaaattggtgatatttttttgggctctttgttcctaataatgtgcttcattaatattaaaaatattgacgatatttattatccaagaaattgggataa 10095074  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    |||||||||||||||||||||||||||| |||||||| |||||  |||||||||||||||||| |||||||||    
T  10095073 ttttcataacaaagcaaattctattttaattgaaaatagggtgctaaaatttcagtctacttcacatgtgcta 10095001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 7413872 - 7413723
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| ||| |||| |||||||    
T  7413872 gggccctttgttcctaataatgtgcttcactaatattaaaaatatcgacgatatttattatccaagaaattgggataattttcgtaa-aaagaaaattct 7413774  T
Q  150 attttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||||||||||||| |||||  |||||||||||||||||| |||||||||    
T  7413773 attttagttgaaaatagggtgctaaaatttcagtctacttcacatgtgcta 7413723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 7459953 - 7459804
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| ||| |||| |||||||    
T  7459953 gggccctttgttcctaataatgtgcttcactaatattaaaaatatcgacgatatttattatccaagaaattgggataattttcgtaa-aaagaaaattct 7459855  T
Q  150 attttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||||||||||||| |||||  |||||||||||||||||| |||||||||    
T  7459854 attttagttgaaaatagggtgctaaaatttcagtctacttcacatgtgcta 7459804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 54 - 200
Target Start/End: Complemental strand, 39480376 - 39480230
Alignment:
Q  54 cctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattt 153  Q
    ||||||||||||||||||||||||||||||||||||||| | ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39480376 cctttgttcctaataatgtgcttcactaatattaaaaatatcgacgatattttttatccaagaaattgggataattttcataacaaagcaaattctattt 39480277  T
Q  154 tagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    |||||||||||||||||  ||||||| ||| |||   ||||||||||    
T  39480276 tagttgaaaatggggtgctaaaattttagtttaccatgcatgtgcta 39480230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 54 - 168
Target Start/End: Complemental strand, 6261706 - 6261592
Alignment:
Q  54 cctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattt 153  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  |||||| |||| ||| ||||||||||||||||||||||||||||||||||||||    
T  6261706 cctttgttcctaataatgtgcttcactaatattaaaaatattgatgatattttttattcaataaattgggataattttcataacaaagcaaattctattt 6261607  T
Q  154 tagttgaaaatgggg 168  Q
    ||||| |||||||||    
T  6261606 tagttaaaaatgggg 6261592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 50 - 167
Target Start/End: Original strand, 52458991 - 52459108
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||||  ||||||||||||||||| | ||  ||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  52458991 gggccctttgttcctaataatgtgtctcactaatattaaaaatatcgatgatatttattatccaagaaattgggatatttttcataacaaaacaaattct 52459090  T
Q  150 attttagttgaaaatggg 167  Q
    ||||||||||||||||||    
T  52459091 attttagttgaaaatggg 52459108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 50 - 167
Target Start/End: Original strand, 52460248 - 52460365
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||||  ||||||||||||||||| | ||  ||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  52460248 gggccctttgttcctaataatgtgtctcactaatattaaaaatatcgatgatatttattatccaagaaattgggatatttttcataacaaaacaaattct 52460347  T
Q  150 attttagttgaaaatggg 167  Q
    ||||||||||||||||||    
T  52460348 attttagttgaaaatggg 52460365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 53 - 167
Target Start/End: Original strand, 10142121 - 10142235
Alignment:
Q  53 ccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatt 152  Q
    ||||||||| |||||||||||||||||||||||||||||| |||   ||||||||||||||| ||||||||||||||||||||||||| |||||| ||||    
T  10142121 ccctttgtttctaataatgtgcttcactaatattaaaaatattggtgatatttattatccaataaattgggataattttcataacaaaacaaattatatt 10142220  T
Q  153 ttagttgaaaatggg 167  Q
    ||| |||||||||||    
T  10142221 ttacttgaaaatggg 10142235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 50 - 165
Target Start/End: Complemental strand, 1843287 - 1843172
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||   ||||| |||||| |||||||||||||||||||||||||||| |||||| |    
T  1843287 gggccctttgttcctaataatgtgcctcactaatattaaaaatattggagatattcattatctaagaaattgggataattttcataacaaaacaaattat 1843188  T
Q  150 attttagttgaaaatg 165  Q
    ||||| ||||||||||    
T  1843187 atttttgttgaaaatg 1843172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 13957225 - 13957339
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||    ||||||||||||||| ||||||||||||||||| ||||||| |||||| |    
T  13957225 gggccctttgttcctaataatgtgcttcactaatatgaaaaatattagtgatatttattatccaataaattgggataattttcgtaacaaaacaaattat 13957324  T
Q  150 attttagttgaaaat 164  Q
    |||||||||||||||    
T  13957325 attttagttgaaaat 13957339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 165
Target Start/End: Complemental strand, 9921977 - 9921865
Alignment:
Q  53 ccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatt 152  Q
    ||||||| |||||||||||||  ||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||    
T  9921977 ccctttggtcctaataatgtgtctcactaatattaaaaatattgatgatatttattatccaagaaattgggataattttcgtaataaaacaaattatatt 9921878  T
Q  153 ttagttgaaaatg 165  Q
    |||||||||||||    
T  9921877 ttagttgaaaatg 9921865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 36213712 - 36213857
Alignment:
Q  54 cctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttatt-atccaagaaattgggataattttcataacaaagcaaattctatt 152  Q
    ||||| ||||||||||||||||||||||||||||||| | ||||| |||||| || ||| ||||||||||||||||||  |||||||| |||||||||||    
T  36213712 cctttattcctaataatgtgcttcactaatattaaaa-tattgacgatatttttttatctaagaaattgggataattta-ataacaaaacaaattctatt 36213809  T
Q  153 ttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||||||||||||||||  ||||||| ||| ||||  ||||||||||    
T  36213810 ttagttgaaaatggggtgctaaaattttagtttactatgcatgtgcta 36213857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 66 - 165
Target Start/End: Complemental strand, 42512344 - 42512245
Alignment:
Q  66 ataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaatg 165  Q
    ||||| ||||||||||||||||||||| |||   ||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  42512344 ataatttgcttcactaatattaaaaatattggggatatttattatccaataaattgggataattttcataacaaaacaaattatattttagttgaaaatg 42512245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 52 - 165
Target Start/End: Complemental strand, 3665589 - 3665477
Alignment:
Q  52 gccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctat 151  Q
    |||||||||||| |||||| ||  ||||||||||||||| | | ||  ||||||||||| |||||||||| |||||||||||||||||| ||||||||||    
T  3665589 gccctttgttccaaataatatgtctcactaatattaaaa-tatcgatgatatttattattcaagaaattgagataattttcataacaaaacaaattctat 3665491  T
Q  152 tttagttgaaaatg 165  Q
    ||||||||||||||    
T  3665490 tttagttgaaaatg 3665477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 167
Target Start/End: Original strand, 51337617 - 51337734
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    |||||||||| |||||||||| ||  | ||||||||||||||| |     ||||||||||||||| ||||||||| ||||||||||||||| |||||| |    
T  51337617 gggccctttggtcctaataatatgtcttactaatattaaaaatatatgtgatatttattatccaaaaaattgggagaattttcataacaaaacaaattat 51337716  T
Q  150 attttagttgaaaatggg 167  Q
    ||||||||||||||||||    
T  51337717 attttagttgaaaatggg 51337734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 24611430 - 24611366
Alignment:
Q  100 atatttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaat 164  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  24611430 atatttattatccaagaaattgagataattttcataacaaaacaaattctattttagttgaaaat 24611366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 50 - 166
Target Start/End: Complemental strand, 28143584 - 28143468
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||||  | ||||||||||||||| |     ||||||||||||||  ||||||||| |||| |||||||||| |||||| |    
T  28143584 gggccctttgttcctaataatgtgtcttactaatattaaaaatatatgtgatatttattatccagaaaattgggagaattctcataacaaaacaaattat 28143485  T
Q  150 attttagttgaaaatgg 166  Q
    |||||||||||||||||    
T  28143484 attttagttgaaaatgg 28143468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 50 - 161
Target Start/End: Complemental strand, 29283139 - 29283029
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    |||||||||||| |||||||||||| |||||||||||||| || |||   |||||||||||||||||||||| ||||||||| ||||||||  ||||| |    
T  29283139 gggccctttgtttctaataatgtgcctcactaatattaaatatattggtaatatttattatccaagaaattgagataatttt-ataacaaaataaattat 29283041  T
Q  150 attttagttgaa 161  Q
    |||||| |||||    
T  29283040 attttaattgaa 29283029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 55 - 166
Target Start/End: Complemental strand, 10373495 - 10373385
Alignment:
Q  55 ctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatttt 154  Q
    |||| |||| |||||||| | ||||||||||||||||| |||  |||||| ||||| |||||||||| ||||||||| |||| ||| |||||| ||||||    
T  10373495 ctttcttccgaataatgtccctcactaatattaaaaatattggtcatattcattatacaagaaattgagataatttt-ataataaaacaaattatatttt 10373397  T
Q  155 agttgaaaatgg 166  Q
    ||||||||||||    
T  10373396 agttgaaaatgg 10373385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 164
Target Start/End: Complemental strand, 41509310 - 41509209
Alignment:
Q  62 cctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaa 161  Q
    ||||||||||||  ||||||||||||||||| |||   |||||||||||||||||||||| || |||||| ||||| || |||||| |||||||||||||    
T  41509310 cctaataatgtgtctcactaatattaaaaatattggtaatatttattatccaagaaattgagacaatttt-ataactaaacaaattatattttagttgaa 41509212  T
Q  162 aat 164  Q
    |||    
T  41509211 aat 41509209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 167
Target Start/End: Complemental strand, 14192452 - 14192335
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    |||||||||||||||||||||||   | ||||||||||||||| |     ||||||||||||||  ||||||||| ||| ||||||||||| |||||  |    
T  14192452 gggccctttgttcctaataatgtatcttactaatattaaaaatatatgtgatatttattatccagaaaattgggagaatcttcataacaaaacaaataat 14192353  T
Q  150 attttagttgaaaatggg 167  Q
    |||||||| |||||||||    
T  14192352 attttagtagaaaatggg 14192335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 23935903 - 23935828
Alignment:
Q  53 ccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataat 128  Q
    |||||| ||||||||||||||| ||||||||||||| ||| |||   ||||||||||||||||||||||| |||||    
T  23935903 ccctttattcctaataatgtgcctcactaatattaataatattggtgatatttattatccaagaaattggaataat 23935828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 167
Target Start/End: Original strand, 21319991 - 21320104
Alignment:
Q  54 cctttgttcctaataatgtgcttcactaatattaaaaa-tgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatt 152  Q
    ||||||||||||||||||||  ||||| |||| ||||| |  ||   |||||||||| |||| ||||| |||||||||| |||||||| |||||| ||||    
T  21319991 cctttgttcctaataatgtgtctcactgatataaaaaaataatggtgatatttattaaccaataaattaggataatttt-ataacaaaacaaattatatt 21320089  T
Q  153 ttagttgaaaatggg 167  Q
    |||||||||||||||    
T  21320090 ttagttgaaaatggg 21320104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 25201039 - 25201099
Alignment:
Q  104 ttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaat 164  Q
    ||||||||||||||||||||||||||||||||||||| ||||   |||||||||| |||||    
T  25201039 ttattatccaagaaattgggataattttcataacaaaacaaaagatattttagttaaaaat 25201099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 9900187 - 9900076
Alignment:
Q  54 cctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattt 153  Q
    |||||||||||| |||||    ||||| ||||||||||| |||   |||||||  ||| ||||||||||||||||||||||||  || | |||| |||||    
T  9900187 cctttgttcctattaatgcatctcactgatattaaaaatattggtgatatttaccatctaagaaattgggataattttcataatgaaacgaattatattt 9900088  T
Q  154 tagttgaaaatg 165  Q
    ||||||||||||    
T  9900087 tagttgaaaatg 9900076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 51890508 - 51890447
Alignment:
Q  103 tttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaat 164  Q
    |||||||||||| ||||||| || ||||||||||||||  ||||| ||||||||||||||||    
T  51890508 tttattatccaataaattggaatcattttcataacaaaataaattatattttagttgaaaat 51890447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 51890782 - 51890721
Alignment:
Q  103 tttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaat 164  Q
    |||||||||||| ||||||| || ||||||||||||||  ||||| ||||||||||||||||    
T  51890782 tttattatccaataaattggaatcattttcataacaaaataaattatattttagttgaaaat 51890721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 56366999 - 56366889
Alignment:
Q  54 cctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattt 153  Q
    ||||||||| ||||||||||  ||||||||  ||||| | |||   |||||||||||| ||||||||| || ||| ||| ||||||| ||||   |||||    
T  56366999 cctttgttcttaataatgtgtctcactaattataaaa-tattggtaatatttattatctaagaaattgtgagaatcttcgtaacaaaacaaacgatattt 56366901  T
Q  154 tagttgaaaatg 165  Q
    ||||||||||||    
T  56366900 tagttgaaaatg 56366889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 298
Target Start/End: Complemental strand, 6261523 - 6261489
Alignment:
Q  264 cagatgttgtctaaaaaacatttatttggtagtga 298  Q
    |||||||| ||||||||||||||||||||||||||    
T  6261523 cagatgttatctaaaaaacatttatttggtagtga 6261489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 24612105 - 24612043
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatcc 112  Q
    |||| ||||||||||||||||||   ||||||||||||||||| | ||  |||||||||||||    
T  24612105 gggcactttgttcctaataatgtatctcactaatattaaaaatatcgatgatatttattatcc 24612043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 298
Target Start/End: Original strand, 36213921 - 36213955
Alignment:
Q  264 cagatgttgtctaaaaaacatttatttggtagtga 298  Q
    |||||||| ||||||||||||||||||||||||||    
T  36213921 cagatgttatctaaaaaacatttatttggtagtga 36213955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 51890967 - 51890934
Alignment:
Q  53 ccctttgttcctaataatgtgcttcactaatatt 86  Q
    |||||||||||||||||||| |||||||||||||    
T  51890967 ccctttgttcctaataatgttcttcactaatatt 51890934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 28 - 200
Target Start/End: Complemental strand, 10994300 - 10994128
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       |||||||||||||||||||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  10994300 aagaaattggtgatatttttttgggccctttgttcctaataatgtgcttcgctaatattaaaaatatcgacgatatttattatccaagaaattgggataa 10994201  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    |||||||||||||||||||| |||||||||||||||| |||||  |||||||||||||||||||||| |||||    
T  10994200 ttttcataacaaagcaaattatattttagttgaaaatagggtgctaaaatttcagtctacttcgcatttgcta 10994128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 27941645 - 27941495
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    |||||||||||||||||| |||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27941645 gggccctttgttcctaattatgtgcttcattaatattaaaaatatcgaagatatttattatccaagaaattgggataattttcataacaaagcaaattct 27941546  T
Q  150 attttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||||||||||||| |||||  |||||||||||||||||| |||||||||    
T  27941545 attttagttgaaaatagggtgctaaaatttcagtctacttcacatgtgcta 27941495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 53077097 - 53076947
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    |||||||||| |||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  53077097 gggccctttgctcctaataatgtacttcactaatattaaaaatatcgacgatatttattatccaagaaattgggataattttcgtaacaaagcaaattct 53076998  T
Q  150 attttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||||||||||||| |||||  |||||||||||||||||| |||||||||    
T  53076997 attttagttgaaaatagggtgctaaaatttcagtctacttcacatgtgcta 53076947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 25071596 - 25071768
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       ||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||| |||||    
T  25071596 aagaaattggtgatatttttttgggcccttttttcctaataatgtgcttcactaatattaaaaatatcgacgatatttattatccaagaaattgagataa 25071695  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||||||||| ||||||||||||||||||||||||| |||||  | |||||||||||||||| |||||||||    
T  25071696 ttttcataacagagcaaattctattttagttgaaaatagggtgctataatttcagtctacttctcatgtgcta 25071768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 50 - 200
Target Start/End: Original strand, 19157068 - 19157218
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||||||||||  ||||||||||||||||||| ||||||||    
T  19157068 gggccctttgttcctaataatgtgcttcattaatattaaaaatatcgacgatatttattatccaagaaatgaggataattttcataacaaaacaaattct 19157167  T
Q  150 attttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||||||||||||| |||||  |||||||||||||||||| |||||||||    
T  19157168 attttagttgaaaatagggtgctaaaatttcagtctacttcacatgtgcta 19157218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 50 - 200
Target Start/End: Original strand, 52448118 - 52448268
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||| |||||||||| |||||||||||||||||| | ||| ||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  52448118 gggccctttgttcttaataatgtgtttcactaatattaaaaatatcgacgatatttattatccaagaaattgatataattttcattacaaagcaaattct 52448217  T
Q  150 attttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    |||||| |||| |||||||||  ||||||||||||||||||||||||||||    
T  52448218 attttatttgataatggggtgctaaaatttcagtctacttcgcatgtgcta 52448268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 54 - 197
Target Start/End: Original strand, 15760838 - 15760981
Alignment:
Q  54 cctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattt 153  Q
    ||||||||| |||||| ||||||||||||| |||||||| | ||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  15760838 cctttgttcttaataacgtgcttcactaattttaaaaatatcgacgatatttattatccaagaaattgggataattttcataacatagcaaattttattt 15760937  T
Q  154 tagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtg 197  Q
    ||||||||||||| |||  |||||||| ||||||||| ||||||    
T  15760938 tagttgaaaatggagtgctaaaatttccgtctacttcacatgtg 15760981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 50 - 165
Target Start/End: Original strand, 29713781 - 29713896
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    |||||||||||| |||||||||||| ||||||||||||||||| |||   |||||||||||| |||||||||||||||||||||||||||| |||||| |    
T  29713781 gggccctttgttactaataatgtgcctcactaatattaaaaatattggtgatatttattatctaagaaattgggataattttcataacaaaacaaattat 29713880  T
Q  150 attttagttgaaaatg 165  Q
    ||||||||||||||||    
T  29713881 attttagttgaaaatg 29713896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 166
Target Start/End: Original strand, 47184918 - 47185056
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       ||||||||| ||||||||||||| |||||||||||||| |||| |||   ||||||||||||||| ||||||||||||    
T  47184918 aagaaattggtgatatttatttgggccctttcttcctaataatgttcttcactaatattacaaatattggtgatatttattatccaataaattgggataa 47185017  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatgg 166  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  47185018 ttttcataacaaaacaaattatattttagttgaaaatgg 47185056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 54 - 164
Target Start/End: Original strand, 1698398 - 1698508
Alignment:
Q  54 cctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattt 153  Q
    |||||||| |||||||||||||||||||||||||||||| | ||  |||||||||||||||||||||| |||||||||| ||||||| ||||||||||||    
T  1698398 cctttgtttctaataatgtgcttcactaatattaaaaatatcgatgatatttattatccaagaaattgagataattttcctaacaaaacaaattctattt 1698497  T
Q  154 tagttgaaaat 164  Q
     ||||||||||    
T  1698498 aagttgaaaat 1698508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 10993200 - 10993086
Alignment:
Q  51 ggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattcta 150  Q
    |||| ||||||||||||||||||| ||||||||||||||||| |||   ||||||||||||||||||||| ||||||||||||||||||| ||||||  |    
T  10993200 ggccttttgttcctaataatgtgcctcactaatattaaaaatattggtgatatttattatccaagaaatttggataattttcataacaaaacaaatttca 10993101  T
Q  151 ttttagttgaaaatg 165  Q
    |||||||||||||||    
T  10993100 ttttagttgaaaatg 10993086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 165
Target Start/End: Complemental strand, 44663446 - 44663338
Alignment:
Q  57 ttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattttag 156  Q
    |||||||||||||||||| |||||||||||||| || |||   ||||||||||||||||||||||  |||||||||| |||||| |||||| ||||||||    
T  44663446 ttgttcctaataatgtgcctcactaatattaaatatattggtgatatttattatccaagaaattgaaataattttcaaaacaaaacaaattatattttag 44663347  T
Q  157 ttgaaaatg 165  Q
    |||||||||    
T  44663346 ttgaaaatg 44663338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 166
Target Start/End: Complemental strand, 11640117 - 11640005
Alignment:
Q  54 cctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattt 153  Q
    ||||| ||| |||| |||| | ||||||||||||||||| | ||  ||||||||||| |||||||||||||||||||||||||||||  ||||| |||||    
T  11640117 cctttattcataatgatgtacctcactaatattaaaaatatcgatgatatttattattcaagaaattgggataattttcataacaaaataaattttattt 11640018  T
Q  154 tagttgaaaatgg 166  Q
    |||||||||||||    
T  11640017 tagttgaaaatgg 11640005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 164
Target Start/End: Complemental strand, 30191298 - 30191185
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||| ||| |||||||||||||| ||||||||||||||| || ||   |||||||||||||||| |||||| ||||||||| ||||||||  ||||| |    
T  30191298 gggccatttattcctaataatgtgtttcactaatattaaatatattagtcatatttattatccaaaaaattgagataatttt-ataacaaaagaaattat 30191200  T
Q  150 attttagttgaaaat 164  Q
    |||||||||||||||    
T  30191199 attttagttgaaaat 30191185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 3918234 - 3918145
Alignment:
Q  76 tcactaatattaaaaatgttgaccatatttattatccaagaaa-ttgggataattttcataacaaagcaaattctattttagttgaaaat 164  Q
    |||||||||||||||||||||   |||||||| |||||| ||| ||||||||||| |||||||||| |||||||||||||||||||||||    
T  3918234 tcactaatattaaaaatgttggtgatatttatcatccaaaaaagttgggataattctcataacaaaacaaattctattttagttgaaaat 3918145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 50 - 167
Target Start/End: Complemental strand, 23045025 - 23044908
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||| ||||||||||||||  | ||||||||||||||  |     ||||||||||||||  ||||||||| ||||||||||||||| |||||| |    
T  23045025 gggccctttattcctaataatgtgtcttactaatattaaaaagatatgtgatatttattatccagaaaattgggagaattttcataacaaaacaaattat 23044926  T
Q  150 attttagttgaaaatggg 167  Q
    ||||||||||||||||||    
T  23044925 attttagttgaaaatggg 23044908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 50 - 167
Target Start/End: Complemental strand, 31885085 - 31884968
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||||  | ||||||||||||||| |     ||||||||||||||  ||||||||| |||| ||||||||||  ||||| |    
T  31885085 gggccctttgttcctaataatgtgtcttactaatattaaaaatatatgtgatatttattatccagaaaattgggaaaattctcataacaaaataaattat 31884986  T
Q  150 attttagttgaaaatggg 167  Q
    ||||||||||||||||||    
T  31884985 attttagttgaaaatggg 31884968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 166
Target Start/End: Original strand, 12893035 - 12893141
Alignment:
Q  60 ttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattttagttg 159  Q
    ||||||| || |||| |||||||||||||| || |||   || ||||||||||||||||||| ||||||||| |||| ||| || |||||||||||||||    
T  12893035 ttcctaagaacgtgcctcactaatattaaatatattggtgatgtttattatccaagaaattgagataatttttataagaaaacatattctattttagttg 12893134  T
Q  160 aaaatgg 166  Q
    |||||||    
T  12893135 aaaatgg 12893141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 24927979 - 24927913
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaaga 116  Q
    ||||||||||||| ||||||||||||||||||||||||||||| | ||| |||||||||||||||||    
T  24927979 gggccctttgttcttaataatgtgcttcactaatattaaaaatatcgacgatatttattatccaaga 24927913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 53472148 - 53472211
Alignment:
Q  102 atttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaatg 165  Q
    |||||||||||||||||||| ||||||||| |||||||| |||||| |||||||||||||||||    
T  53472148 atttattatccaagaaattgagataattttaataacaaaacaaattatattttagttgaaaatg 53472211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 164
Target Start/End: Original strand, 1424675 - 1424782
Alignment:
Q  53 ccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatt 152  Q
    |||||||||||||||||||||| |||||||||||| | ||  |   | ||||||||||||||||||||||||||||||| ||||||||  ||| | ||||    
T  1424675 ccctttgttcctaataatgtgcctcactaatattatatat--tagtcgtatttattatccaagaaattgggataatttt-ataacaaa-aaaaatatatt 1424770  T
Q  153 ttagttgaaaat 164  Q
    ||||||||||||    
T  1424771 ttagttgaaaat 1424782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 40145441 - 40145552
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    |||||||||||| |||||||||||| ||||||| |||||| |  |||  ||||||||||||||||||| ||||   || ||| |||||||| |||||| |    
T  40145441 gggccctttgtttctaataatgtgcctcactaacattaaatacattgttcatatttattatccaagaatttgg---aaattttataacaaaacaaattat 40145537  T
Q  150 attttagttgaaaat 164  Q
    ||||||||| |||||    
T  40145538 attttagttcaaaat 40145552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 50 - 167
Target Start/End: Complemental strand, 6024894 - 6024777
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    |||||||||||| ||||||||||   | ||||||||||||||| |     ||||||||||||||  ||||||||| ||| ||||||||||| |||||  |    
T  6024894 gggccctttgttgctaataatgtatcttactaatattaaaaatatatgtgatatttattatccagaaaattgggagaatcttcataacaaaacaaataat 6024795  T
Q  150 attttagttgaaaatggg 167  Q
    |||||||| |||||||||    
T  6024794 attttagtagaaaatggg 6024777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 17147208 - 17147296
Alignment:
Q  65 aataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatttt 154  Q
    |||||||||  ||||||||||||||||| |||   ||||||||||||||||||||||| |||| ||||||||||||  ||||| ||||||    
T  17147208 aataatgtgtctcactaatattaaaaatattggtgatatttattatccaagaaattggaataa-tttcataacaaaataaattatatttt 17147296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 164
Target Start/End: Complemental strand, 16876999 - 16876891
Alignment:
Q  53 ccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatt 152  Q
    ||||||||| |||||||||||  |  ||||||||||| || |||  ||||||||||||||||||||||  || |||||| |||||||| |||||  ||||    
T  16876999 ccctttgtttctaataatgtgtcttgctaatattaaatatattggtcatatttattatccaagaaatt--gagaatttt-ataacaaaacaaataatatt 16876903  T
Q  153 ttagttgaaaat 164  Q
    ||||||||||||    
T  16876902 ttagttgaaaat 16876891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 4127549 - 4127612
Alignment:
Q  100 atatttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaat 164  Q
    |||||||||||||||||||||| |||||||||| ||||||| |||| | | ||||||||||||||    
T  4127549 atatttattatccaagaaattgagataattttcttaacaaa-caaagtattttttagttgaaaat 4127612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 165
Target Start/End: Original strand, 6583948 - 6584059
Alignment:
Q  54 cctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattt 153  Q
    ||||| ||||||||||||||  | ||||||||||||||| ||    ||||||| ||||||  ||||| ||| ||| ||||  |||||  ||||| |||||    
T  6583948 cctttattcctaataatgtgtcttactaatattaaaaatatttgtgatatttaatatccataaaatttggagaatcttcaccacaaaataaattatattt 6584047  T
Q  154 tagttgaaaatg 165  Q
    ||||||||||||    
T  6584048 tagttgaaaatg 6584059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 90
Target Start/End: Original strand, 4127314 - 4127348
Alignment:
Q  56 tttgttcctaataatgtgcttcactaatattaaaa 90  Q
    ||||||||||||||||||| |||||||||||||||    
T  4127314 tttgttcctaataatgtgcctcactaatattaaaa 4127348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 298
Target Start/End: Original strand, 52448332 - 52448366
Alignment:
Q  264 cagatgttgtctaaaaaacatttatttggtagtga 298  Q
    |||||||| ||||||||||||||||||||||||||    
T  52448332 cagatgttatctaaaaaacatttatttggtagtga 52448366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 50 - 194
Target Start/End: Complemental strand, 87762 - 87618
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||| ||||||||||||||||||| | ||| |||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  87762 gggccctttgttcctaataatgtacttcactaatattaaaaatatcgacaatatttattatccaagaaattgagataattttcataacgaagcaaattct 87663  T
Q  150 attttagttgaaaatggggtgtgaaaatttcagtctacttcgcat 194  Q
    |||||||||||||||||||||  ||||||||||||||||||||||    
T  87662 attttagttgaaaatggggtgctaaaatttcagtctacttcgcat 87618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 50 - 194
Target Start/End: Complemental strand, 89188 - 89044
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||| ||||||||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  89188 gggccctttgttcctaataatgtacttcactaatattaaaaatatcgacaatatttattatccaagaaattgagataattttcataacaaagcaaattct 89089  T
Q  150 attttagttgaaaatggggtgtgaaaatttcagtctacttcgcat 194  Q
    ||||||||||||||| |||||  ||||||||||||||||||||||    
T  89088 attttagttgaaaattgggtgctaaaatttcagtctacttcgcat 89044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 50 - 190
Target Start/End: Complemental strand, 88236 - 88096
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||| ||||||||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  88236 gggccctttgttcctaataatgtacttcactaatattaaaaatatcgacaatatttattatccaagaaattgagataattttcataacaaagcaaattct 88137  T
Q  150 attttagttgaaaatggggtgtgaaaatttcagtctacttc 190  Q
    ||||||||||||||| |||||  ||||||||||||||||||    
T  88136 attttagttgaaaattgggtgctaaaatttcagtctacttc 88096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 50 - 190
Target Start/End: Complemental strand, 88712 - 88572
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||| ||||||||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  88712 gggccctttgttcctaataatgtacttcactaatattaaaaatatcgacaatatttattatccaagaaattgagataattttcataacaaagcaaattct 88613  T
Q  150 attttagttgaaaatggggtgtgaaaatttcagtctacttc 190  Q
    ||||||||||||||| |||||  ||||||||||||||||||    
T  88612 attttagttgaaaattgggtgctaaaatttcagtctacttc 88572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 18675306 - 18675475
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       |||||||||||||||||||| ||| |||||||||||||||||| ||| | ||||||||||||||||||||| ||||||    
T  18675306 aagaaattggtgatatttttttgggccctttgttcctaataacgtgtttcactaatattaaaaatattgtcgatatttattatccaagaaattaggataa 18675405  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtg 197  Q
    ||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  18675406 ttttcataacaaagcaaattctattttagttaaaaatggggtgctaaaatttcagtctacttcgcatgtg 18675475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 34043497 - 34043669
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       ||||||||||||||||||||||| ||||| ||||||||||||| | ||| |||||||||||||||||||| |||||||    
T  34043497 aagaaattggtgatatttttttgggccctttgttcctaataatgttcttcattaatattaaaaatatcgacgatatttattatccaagaaatggggataa 34043596  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||| |||||||||    
T  34043597 ttttcataacaaagcaaattctattttagttgaaaatagggtgctaaaatttcagtctacttcacatgtgcta 34043669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 22012245 - 22012095
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    |||||||||||||||||| |||||||||| ||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22012245 gggccctttgttcctaattatgtgcttcattaatattaaaaatatcgacgatatttattatccaagaaattgagataattttcataacaaagcaaattct 22012146  T
Q  150 attttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||||||||||||| |||||  |||||||||||||||||| ||| |||||    
T  22012145 attttagttgaaaatagggtgctaaaatttcagtctacttcacatatgcta 22012095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 1422908 - 1423077
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       ||||||||||||||| |||| ||| |||||||||||||||||| ||||  ||||||||||||||||||||||||||||    
T  1422908 aagaaattggtgatatttttttgggccctttgttcctgataacgtgtttcactaatattaaaaatattgatgatatttattatccaagaaattgggataa 1423007  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtg 197  Q
    ||||||||||||||||||||||||||||||||||||| ||||   |||||||||||||| ||| ||||||    
T  1423008 ttttcataacaaagcaaattctattttagttgaaaattgggtactaaaatttcagtctagttctcatgtg 1423077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 1603323 - 1603494
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       ||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||||||||||  ||||||    
T  1603323 aagaaattggtgatatttttttgggccctttgttcctaataatgtgcttcattaatattaaaaatatcgacgatatttattatccaagaaatgaggataa 1603422  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||||||||||||||||||||| |||||||||||||  ||||  |||||||||||||||||| |||||||||    
T  1603423 ttttcataacaaagcaaattcta-tttagttgaaaatatggtgctaaaatttcagtctacttcacatgtgcta 1603494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 50 - 196
Target Start/End: Original strand, 1131749 - 1131895
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||| ||| | ||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1131749 gggcccttttttcttgataatgtgcttcactaatattaaaaatatcgacgatatttattatccaagaaattgggataattttcataataaagcaaattct 1131848  T
Q  150 attttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgt 196  Q
    ||||||||||||||||||  || ||||||||| |||||||| |||||    
T  1131849 attttagttgaaaatgggccgttaaaatttcaatctacttcacatgt 1131895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 50 - 200
Target Start/End: Original strand, 20990412 - 20990564
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaa--tt 147  Q
    ||||||||||||| ||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||| |||||||||||| ||||||||||  ||    
T  20990412 gggccctttgttcttaataatgtgcttcactaatattaaaaatatcgacgatatttattatccaagaaattgagataattttcattacaaagcaaatttt 20990511  T
Q  148 ctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
     ||||||  || | |||||||||  ||||||||||||||||||||||||||||    
T  20990512 ttatttttttttataatggggtgctaaaatttcagtctacttcgcatgtgcta 20990564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 50 - 165
Target Start/End: Complemental strand, 11680986 - 11680871
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||   ||||||||||||||| ||||||| ||||||||||||||||| |||||| |    
T  11680986 gggcccttttttcctaataatgtgcttcactaatattaaaaatattggtgatatttattatccaataaattggaataattttcataacaaaacaaattat 11680887  T
Q  150 attttagttgaaaatg 165  Q
    ||||||||||||||||    
T  11680886 attttagttgaaaatg 11680871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 100 - 200
Target Start/End: Original strand, 21442662 - 21442762
Alignment:
Q  100 atatttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgct 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||  |||||||||| ||||||||    
T  21442662 atatttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaatagggtgctaaaattctagtctacttcacatgtgct 21442761  T
Q  200 a 200  Q
    |    
T  21442762 a 21442762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 50 - 165
Target Start/End: Original strand, 31129720 - 31129834
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||| ||||||||||| |||||| |||||||||| ||||  |||||||||||| |||||||||||||||||||||||||||| | ||||      
T  31129720 gggccctttgttcttaataatgtgcctcactagtattaaaaatattgatgatatttattatcaaagaaattgggataattttcataacaaaac-aattac 31129818  T
Q  150 attttagttgaaaatg 165  Q
    ||||||||||||||||    
T  31129819 attttagttgaaaatg 31129834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 15060141 - 15060255
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    |||| |||||||| ||||||||||  ||||| ||||||||||| | ||  |||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  15060141 gggcactttgttcataataatgtgtctcactgatattaaaaatatcgatgatatttattatccaagaaattgagataattttcataacaaaacaaattct 15060240  T
Q  150 attttagttgaaaat 164  Q
    ||||||||| |||||    
T  15060241 attttagttaaaaat 15060255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 164
Target Start/End: Original strand, 26817336 - 26817445
Alignment:
Q  53 ccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatt 152  Q
    ||||||||| |||||||||||| | |||||||||| |||| | ||  ||||||||||||||||||||||||||| ||||||||||||  |||||||||||    
T  26817336 ccctttgtttctaataatgtgcctaactaatattacaaatatcgatgatatttattatccaagaaattgggatatttttcataacaa--caaattctatt 26817433  T
Q  153 ttagttgaaaat 164  Q
    ||||||||||||    
T  26817434 ttagttgaaaat 26817445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 165
Target Start/End: Original strand, 19107911 - 19108026
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||| ||||||| | ||||||||||||||||| |||   ||||||||||||||| |||||||||||||||||| ||||||  ||  | |    
T  19107911 gggccctttgttcctgataatgttcctcactaatattaaaaatattggtgatatttattatccaaaaaattgggataattttcaaaacaaaaaaatatat 19108010  T
Q  150 attttagttgaaaatg 165  Q
    ||||||||||||||||    
T  19108011 attttagttgaaaatg 19108026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 167
Target Start/End: Complemental strand, 33516755 - 33516638
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||| ||||||||||  | ||||||||||||||| |     ||||||||||||||  ||||||||| ||||||||||||||| |||||| |    
T  33516755 gggccctttgttcataataatgtgtcttactaatattaaaaatatatgtgatatttattatccagaaaattgggagaattttcataacaaaacaaattat 33516656  T
Q  150 attttagttgaaaatggg 167  Q
    ||||||||||||||||||    
T  33516655 attttagttgaaaatggg 33516638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 57 - 165
Target Start/End: Complemental strand, 4065709 - 4065601
Alignment:
Q  57 ttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattttag 156  Q
    |||||| ||||||| ||||||||||||  ||||||| |||   ||||||||||||||||||||||| | | | ||||||||||| |||||  ||||||||    
T  4065709 ttgttcataataatttgcttcactaattataaaaatattggtgatatttattatccaagaaattggaagactcttcataacaaaacaaatgatattttag 4065610  T
Q  157 ttgaaaatg 165  Q
    |||||||||    
T  4065609 ttgaaaatg 4065601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 164
Target Start/End: Complemental strand, 3229315 - 3229212
Alignment:
Q  60 ttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattttagttg 159  Q
    ||||||||||||| || |||||| ||||||||| |||   ||||||||||||||||||||  ||||||||||||||||||| |||||| | |  ||||||    
T  3229315 ttcctaataatgtcct-cactaaaattaaaaatattggtgatatttattatccaagaaatgtggataattttcataacaaaacaaattatttcctagttg 3229217  T
Q  160 aaaat 164  Q
    |||||    
T  3229216 aaaat 3229212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 12269374 - 12269487
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||||  | ||||||||||||||| ||    |||||||||||| || ||||| ||| ||| |||| |||||| |||||| |    
T  12269374 gggccctttgttcctaataatgtgtcttactaatattaaaaatatt-ttgatatttattatctaaaaaattaggagaatcttcacaacaaaacaaattat 12269472  T
Q  150 attttagttgaaaat 164  Q
    ||||||||| |||||    
T  12269473 attttagttaaaaat 12269487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 26212978 - 26212906
Alignment:
Q  64 taataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataa 136  Q
    ||||||| ||| ||||||||||||||||| | ||  ||||||||||||||||||||  |||||||||||||||    
T  26212978 taataatatgcctcactaatattaaaaatatcgatgatatttattatccaagaaatcaggataattttcataa 26212906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 4090907 - 4090808
Alignment:
Q  64 taataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaa 163  Q
    ||||||||||  |||| |||  ||||||| ||||  |||||||||||||||||||||| || ||| ||||||||||| ||||   |||||||||||||||    
T  4090907 taataatgtgtctcacaaattataaaaatattgataatatttattatccaagaaattgcgagaatcttcataacaaaacaaacgatattttagttgaaaa 4090808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 22524751 - 22524791
Alignment:
Q  100 atatttattatccaagaaattgggataattttcataacaaa 140  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  22524751 atatttattatccaagaaattgggatgattttcataacaaa 22524791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 265 - 298
Target Start/End: Original strand, 1131962 - 1131995
Alignment:
Q  265 agatgttgtctaaaaaacatttatttggtagtga 298  Q
    ||||||||||||||||||||||||||||||||||    
T  1131962 agatgttgtctaaaaaacatttatttggtagtga 1131995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 13758928 - 13758826
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       ||| ||||||||| |||| ||||||  |||||||||| ||||| | ||| |||||||| || ||| ||||||||||||    
T  13758928 aagaaattggtgatatttttttgggtcctttgttcataattatgtgccccactaatatttaaaatatcgacgatatttataattcaaaaaattgggataa 13758829  T
Q  128 ttt 130  Q
    |||    
T  13758828 ttt 13758826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 298
Target Start/End: Original strand, 1423144 - 1423178
Alignment:
Q  264 cagatgttgtctaaaaaacatttatttggtagtga 298  Q
    |||||||||||||||||| ||||||||||||||||    
T  1423144 cagatgttgtctaaaaaatatttatttggtagtga 1423178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 14677761 - 14677821
Alignment:
Q  107 ttatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaatggg 167  Q
    |||||||  ||||||| | ||| ||||||||||| |||||  |||||||||||||||||||    
T  14677761 ttatccagaaaattggaagaatcttcataacaaaacaaataatattttagttgaaaatggg 14677821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 7e-55; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 28 - 197
Target Start/End: Complemental strand, 8389450 - 8389281
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       ||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||||||||||  ||||||    
T  8389450 aagaaattggtgatatttttttgggccctttgttcctaataatgtgcttcattaatattaaaaatatcgacgatatttattatccaagaaatgaggataa 8389351  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtg 197  Q
    ||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||| ||||||    
T  8389350 ttttcataacaaagcaaattctattttagttgaaaatagggtgctaaaatttcagtctacttcacatgtg 8389281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 28 - 200
Target Start/End: Complemental strand, 20394936 - 20394764
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       ||||||||| ||| ||||||||||||||||||||||||||||| | ||| ||||||||||| ||||||||||||||||    
T  20394936 aagaaattggtgatatttttttgggcccttttttcttaataatgtgcttcactaatattaaaaatatcgacgatatttattattcaagaaattgggataa 20394837  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||||||||||||||||||||||||||||| |||||||| ||  ||||||||||| ||||||||||||||||    
T  20394836 ttttcataacaaagcaaattctattttagttcaaaatgggctgctaaaatttcagtatacttcgcatgtgcta 20394764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 50 - 200
Target Start/End: Original strand, 13754090 - 13754240
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |  || |||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  13754090 gggccctttgttcttaataatgtgcttcactaatattaaaaatatcaacgatatttattatccaagaaattgagataattttcattacaaagcaaattct 13754189  T
Q  150 attttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    |||||| |||| |||||||||  ||||||||||||||||||||||||||||    
T  13754190 attttatttgataatggggtgctaaaatttcagtctacttcgcatgtgcta 13754240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 31072653 - 31072503
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    |||| ||||| |||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31072653 gggcactttgctcctaataatgtacttcactaatattaaaaatatcgacgatatttattatccaagaaattgggataattttcgtaacaaagcaaattct 31072554  T
Q  150 attttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    |||||||||||||||  ||||| |||||||||||||||||| |||||||||    
T  31072553 attttagttgaaaataaggtgttaaaatttcagtctacttcacatgtgcta 31072503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 35478106 - 35477956
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||| |||||||||||||| |||||||||||||| | ||| |||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  35478106 gggccctttgttcttaataatgtgcttcgctaatattaaaaatatcgacgatatttattatccaagaaattgagataattttcattacaaagcaaattct 35478007  T
Q  150 attttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    |||||| |||| |||||||||  ||||||||||||||||||| ||||||||    
T  35478006 attttatttgataatggggtgctaaaatttcagtctacttcggatgtgcta 35477956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 50 - 200
Target Start/End: Original strand, 18667343 - 18667493
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||| ||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||| |||||||||||| |||||||||||||     
T  18667343 gggccctttgttcttaataatgtgcttcactaatattaaaaatatcgacaatatttattatccaagaaattgagataattttcattacaaagcaaattca 18667442  T
Q  150 attttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    |||||  || | |||||||||  ||||||||||||||||||||||||||||    
T  18667443 atttttttttataatggggtgctaaaatttcagtctacttcgcatgtgcta 18667493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 4539819 - 4539986
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       ||||||||||||| ||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||| |||||    
T  4539819 aagaaattggtgatatttttttgggccctttgttcataataatgtgcttcactaatattaaaaatatcgacgatatttattatccaagaaattgagataa 4539918  T
Q  128 ttttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttcagtctacttcgcatgtgcta 200  Q
    ||||||||||| |||||||||     ||||||||||| |||||  ||||||||||||||||||||||||||||    
T  4539919 ttttcataacagagcaaattc-----tagttgaaaatagggtgctaaaatttcagtctacttcgcatgtgcta 4539986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 57 - 166
Target Start/End: Original strand, 21863581 - 21863690
Alignment:
Q  57 ttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattttag 156  Q
    ||||||||||||||||||  |||||||||||||||| |||   ||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||    
T  21863581 ttgttcctaataatgtgccccactaatattaaaaatattggtgatatttattattcaagaaattgagataattttcataacaaagcaaattatattttag 21863680  T
Q  157 ttgaaaatgg 166  Q
    ||||||||||    
T  21863681 ttgaaaatgg 21863690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 1623572 - 1623689
Alignment:
Q  82 atattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaatggggtgtgaaaatttca 181  Q
    ||||||||||| | ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||  |||||||||    
T  1623572 atattaaaaatatcgacaatatttattatccaagaaattgggataattttcgtaacaaagcaaattcta-tttagttgaaaatagggtgctaaaatttca 1623670  T
Q  182 gtctacttcgcatgtgcta 200  Q
     | |||||| |||||||||    
T  1623671 ttatacttcacatgtgcta 1623689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 167
Target Start/End: Complemental strand, 39039020 - 39038903
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||| ||||| ||||||||| ||||||||||||||||| |||   ||||||||| ||||||||||||||||||||||| ||||||| |||||| |    
T  39039020 gggccctttattcctcataatgtgcctcactaatattaaaaatattggtgatatttattgtccaagaaattgggataattttcgtaacaaaacaaattat 39038921  T
Q  150 attttagttgaaaatggg 167  Q
    ||||||||| ||||||||    
T  39038920 attttagttaaaaatggg 39038903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 24442052 - 24441941
Alignment:
Q  54 cctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattt 153  Q
    ||||||||||||||||||||||  ||||||||||||||| |||   ||||||||||||||| |||||||||||||||| |||||||| |||||| |||||    
T  24442052 cctttgttcctaataatgtgctcaactaatattaaaaatattggtgatatttattatccaataaattgggataattttaataacaaaacaaattatattt 24441953  T
Q  154 tagttgaaaatg 165  Q
    | ||||||||||    
T  24441952 ttgttgaaaatg 24441941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 166
Target Start/End: Complemental strand, 41822259 - 41822148
Alignment:
Q  55 ctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatttt 154  Q
    |||| ||||||||||||||| ||||||||||||||||| ||||  ||||||||||||||||||||| |||||||||||||||||||  ||||| |||| |    
T  41822259 cttttttcctaataatgtgcctcactaatattaaaaatattgatgatatttattatccaagaaatttggataattttcataacaaaataaattatattat 41822160  T
Q  155 agttgaaaatgg 166  Q
    |||| |||||||    
T  41822159 agttaaaaatgg 41822148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 53 - 166
Target Start/End: Complemental strand, 29637017 - 29636904
Alignment:
Q  53 ccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatt 152  Q
    |||||| || |||||||||||  | ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||| |||||| |||||| ||||    
T  29637017 ccctttatttctaataatgtgtctgactaatattaaaaatattgatgatatttattatccaataaattgggataattttcaaaacaaaacaaattatatt 29636918  T
Q  153 ttagttgaaaatgg 166  Q
    ||||||||||||||    
T  29636917 ttagttgaaaatgg 29636904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 167
Target Start/End: Original strand, 40934025 - 40934140
Alignment:
Q  51 ggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattcta 150  Q
    |||| |||| |||||||||||||  ||||||||||||||||| |||| |||||||||||||||||||||| |||||||||| |||||||| |||||| |     
T  40934025 ggccatttgctcctaataatgtgtctcactaatattaaaaatattgatcatatttattatccaagaaatttggataatttt-ataacaaaacaaattatg 40934123  T
Q  151 ttttagttgaaaatggg 167  Q
    |||||||||||| ||||    
T  40934124 ttttagttgaaattggg 40934140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 43179548 - 43179439
Alignment:
Q  55 ctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatttt 154  Q
    |||||||||||||||||| | ||||||||||| |||||  ||   |||||||||||||||||||||||||||||||| |||||||| |||||| ||||||    
T  43179548 ctttgttcctaataatgtacctcactaatattgaaaatactggtgatatttattatccaagaaattgggataatttt-ataacaaaacaaattatatttt 43179450  T
Q  155 agttgaaaatg 165  Q
    |||| ||||||    
T  43179449 agttaaaaatg 43179439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 167
Target Start/End: Original strand, 48636668 - 48636785
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||||  | |||||||||||||||       ||||||||||||||| ||||||||| |||||||||||| || |||||| |    
T  48636668 gggccctttgttcctaataatgtgtcttactaatattaaaaatacatgtgatatttattatccaaaaaattgggagaattttcataaccaaacaaattat 48636767  T
Q  150 attttagttgaaaatggg 167  Q
    ||||||||||||||||||    
T  48636768 attttagttgaaaatggg 48636785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 50 - 167
Target Start/End: Complemental strand, 6189532 - 6189415
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||||  | ||||||||||||||| |     ||||||||||||||  ||||||||| |||| || ||||||| |||||| |    
T  6189532 gggccctttgttcctaataatgtgtcttactaatattaaaaatatatgtgatatttattatccagaaaattgggagaattctcttaacaaaacaaattat 6189433  T
Q  150 attttagttgaaaatggg 167  Q
    ||||||||||||||||||    
T  6189432 attttagttgaaaatggg 6189415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 5770852 - 5770928
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggata 126  Q
    ||||||||||||||||||||||||  ||||||||||||||||| |||   |||||||||||||||||||||||||||    
T  5770852 gggccctttgttcctaataatgtgtctcactaatattaaaaatattggtgatatttattatccaagaaattgggata 5770928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 44733619 - 44733725
Alignment:
Q  58 tgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattttagt 157  Q
    |||| |||||||||||  ||||||||||| ||||| | ||  |||||||||||||||||||| | ||||||||||||||||||  |||||||| ||||||    
T  44733619 tgtttctaataatgtgtgtcactaatattgaaaatatcgatgatatttattatccaagaaat-gagataattttcataacaaaataaattctaatttagt 44733717  T
Q  158 tgaaaatg 165  Q
    ||||||||    
T  44733718 tgaaaatg 44733725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 167
Target Start/End: Original strand, 48238426 - 48238542
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||||||  | ||||| ||||||||| |     ||||||||||||||  ||||||| | ||||||||||||||| |||||| |    
T  48238426 gggccctttgttcctaataatgtgtcttactaa-attaaaaatatatgtgatatttattatccagaaaattggaagaattttcataacaaaacaaattat 48238524  T
Q  150 attttagttgaaaatggg 167  Q
    ||||||||||||||||||    
T  48238525 attttagttgaaaatggg 48238542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 58 - 164
Target Start/End: Complemental strand, 8604718 - 8604612
Alignment:
Q  58 tgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattttagt 157  Q
    ||||||||||||||||||||||||||||||| ||| |||  |||| ||||||||||| ||| ||||| | |||| ||||| ||  ||||| ||||||| |    
T  8604718 tgttcctaataatgtgcttcactaatattaataatattggtcataattattatccaataaactgggaaattttttataactaaataaattatattttatt 8604619  T
Q  158 tgaaaat 164  Q
    |||||||    
T  8604618 tgaaaat 8604612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 167
Target Start/End: Original strand, 8069546 - 8069663
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    |||||||||||||||||||| |||  | | ||| ||||||||| |     ||||||||||||||  ||||||||| |||| |||||||||| |||||| |    
T  8069546 gggccctttgttcctaataacgtgtcttattaaaattaaaaatatatgtgatatttattatccagaaaattgggagaattctcataacaaaacaaattat 8069645  T
Q  150 attttagttgaaaatggg 167  Q
    ||||||||||||||||||    
T  8069646 attttagttgaaaatggg 8069663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 164
Target Start/End: Complemental strand, 8114024 - 8113930
Alignment:
Q  68 aatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaat 164  Q
    |||||| |||| ||||||||||||| |||   ||||||||||||||| || ||||| |||||||||||||||  |||||| ||||||||||||||||    
T  8114024 aatgtgtttcattaatattaaaaatattggtgatatttattatccaataagttggggtaattttcataacaa--caaattatattttagttgaaaat 8113930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 9420482 - 9420545
Alignment:
Q  102 atttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaatg 165  Q
    ||||||||||||||||||| |||| ||||||||||||||  ||||| |||||||||||||||||    
T  9420482 atttattatccaagaaattaggattattttcataacaaaataaattttattttagttgaaaatg 9420545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 47522485 - 47522415
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaatt 120  Q
    ||||| ||||||  ||||||||||  |||||||||||||| |||||| |||||||||||||||||||||||    
T  47522485 gggccatttgtttttaataatgtgtctcactaatattaaatatgttggccatatttattatccaagaaatt 47522415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 167
Target Start/End: Complemental strand, 28460345 - 28460255
Alignment:
Q  76 tcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaatggg 167  Q
    |||||| |||||||||| |||   |||||||||||||||||| || ||||||||||  ||||||| |||||  |||||||||||||||||||    
T  28460345 tcactagtattaaaaatattggtgatatttattatccaagaagtttggataatttt-ttaacaaaacaaatgatattttagttgaaaatggg 28460255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 167
Target Start/End: Original strand, 135632 - 135746
Alignment:
Q  53 ccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatt 152  Q
    |||||| |||||||||| |||  | ||||||||||||||| ||    ||||||||||||||  ||||||||| ||| |||| ||| || |||||| ||||    
T  135632 ccctttattcctaataaggtgtcttactaatattaaaaatatttgtaatatttattatccagaaaattgggagaatcttcacaactaaacaaattatatt 135731  T
Q  153 ttagttgaaaatggg 167  Q
    ||| |||||||||||    
T  135732 ttaattgaaaatggg 135746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 3124354 - 3124281
Alignment:
Q  82 atattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatttta 155  Q
    ||||||||||| | ||  |||||||||||||| ||||||| |||| ||||||||||||| |||||| |||||||    
T  3124354 atattaaaaatatcgatgatatttattatccaggaaattgagatatttttcataacaaaacaaattttatttta 3124281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 35118348 - 35118263
Alignment:
Q  76 tcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaat 164  Q
    |||||||||||||| || |||  |||||||||||||||| |||||  || |||||| |||||||| |||||| ||||||||||||||||    
T  35118348 tcactaatattaaatatattggtcatatttattatccaataaatt--gagaatttt-ataacaaaacaaattatattttagttgaaaat 35118263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 36628434 - 36628547
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    |||||||||||| ||||| |||||  ||||||||  ||||||| |||   |||||||||||||||||||||| || |||  |||||| ||| ||||   |    
T  36628434 gggccctttgttactaatcatgtgtctcactaattataaaaatattggtaatatttattatccaagaaattgcgagaatcatcataaaaaaacaaacgat 36628533  T
Q  150 attttagttgaaaa 163  Q
    ||||||||||||||    
T  36628534 attttagttgaaaa 36628547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 80 - 164
Target Start/End: Complemental strand, 45446166 - 45446083
Alignment:
Q  80 taatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaat 164  Q
    ||||||||||||| |||| |||||| || |||||||||||||  ||||| || |||| ||| |||||| ||||||||||||||||    
T  45446166 taatattaaaaatattgatcatatt-atcatccaagaaattgaaataatatttataagaaaacaaattatattttagttgaaaat 45446083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 298
Target Start/End: Complemental strand, 20394700 - 20394666
Alignment:
Q  264 cagatgttgtctaaaaaacatttatttggtagtga 298  Q
    |||||||||||||||||||||||||||||||||||    
T  20394700 cagatgttgtctaaaaaacatttatttggtagtga 20394666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 10015857 - 10015747
Alignment:
Q  54 cctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattt 153  Q
    ||||||||| ||||||||||  ||||||||  ||||| | |||   |||||||||||| ||||||||| || ||| ||| ||||||| ||||   |||||    
T  10015857 cctttgttcttaataatgtgtctcactaattataaaa-tattggtaatatttattatctaagaaattgtgagaatcttcgtaacaaaacaaacgatattt 10015759  T
Q  154 tagttgaaaatg 165  Q
    ||||||||||||    
T  10015758 tagttgaaaatg 10015747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 298
Target Start/End: Original strand, 13754305 - 13754338
Alignment:
Q  265 agatgttgtctaaaaaacatttatttggtagtga 298  Q
    ||||||| ||||||||||||||||||||||||||    
T  13754305 agatgttatctaaaaaacatttatttggtagtga 13754338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 23381092 - 23381161
Alignment:
Q  63 ctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttc 132  Q
    |||||||| ||  ||||||||||||||||| | |   |||||||| |||||| |||||||||||||||||    
T  23381092 ctaataatatgtctcactaatattaaaaatatcggtgatatttatcatccaaaaaattgggataattttc 23381161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1266 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 1289 - 1403
Alignment:
Q  51 ggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattcta 150  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||    ||||||||||||||| |||||| ||| |||||||||||||| |||||||||    
T  1289 ggccctttgttcctaataatgtgcctcactaatattaaaaatatttgtgatatttattatccaataaattgagattattttcataacaaaacaaattcta 1388  T
Q  151 ttttagttgaaaatg 165  Q
    |||||||||||||||    
T  1389 ttttagttgaaaatg 1403  T

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Target: scaffold0093 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 28 - 155
Target Start/End: Original strand, 50881 - 51008
Alignment:
Q  28 aagaaattggtgatannnnnnngggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataa 127  Q
    |||||||||||||||       ||| |||||| |||||||||||| ||||| | ||||||||||| | ||| ||||||||||||||||||||||||||||    
T  50881 aagaaattggtgatatttttttgggtcctttgctcctaataatgtacttcattgatattaaaaatatcgacgatatttattatccaagaaattgggataa 50980  T
Q  128 ttttcataacaaagcaaattctatttta 155  Q
    ||||| ||||||||||||||||||||||    
T  50981 ttttcgtaacaaagcaaattctatttta 51008  T

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Target: scaffold0263 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 18724 - 18613
Alignment:
Q  54 cctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattt 153  Q
    ||||||||||||||||||||| ||||||||||||||||| |||   ||||||||||||||| |||||| ||| ||||| |||||||| |||||| |||||    
T  18724 cctttgttcctaataatgtgcctcactaatattaaaaatattggtgatatttattatccaataaattgagattatttttataacaaaacaaattttattt 18625  T
Q  154 tagttgaaaatg 165  Q
    ||||||||||||    
T  18624 tagttgaaaatg 18613  T

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Target: scaffold0178 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 165
Target Start/End: Complemental strand, 2555 - 2443
Alignment:
Q  53 ccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatt 152  Q
    ||||||||||||||||||||| |||||||||||||||||| ||    ||||||||||| ||| |||||| |||||||| ||||||||| |||||| ||||    
T  2555 ccctttgttcctaataatgtgtttcactaatattaaaaatattagtgatatttattattcaataaattgagataatttgcataacaaaacaaattatatt 2456  T
Q  153 ttagttgaaaatg 165  Q
    |||||||||||||    
T  2455 ttagttgaaaatg 2443  T

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Target: scaffold0160 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 54 - 164
Target Start/End: Original strand, 25097 - 25207
Alignment:
Q  54 cctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctattt 153  Q
    ||||||||||||||||||||  ||||||||||||||||| |||   |||||||||||||||||||||| |||||| ||||| ||||| ||||||  ||||    
T  25097 cctttgttcctaataatgtgtctcactaatattaaaaatattggtgatatttattatccaagaaattgagataatattcatgacaaaccaaattaaattt 25196  T
Q  154 tagttgaaaat 164  Q
    |||||||||||    
T  25197 tagttgaaaat 25207  T

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Target: scaffold0116 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 56 - 165
Target Start/End: Original strand, 40797 - 40906
Alignment:
Q  56 tttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattctatttta 155  Q
    ||||||||||||||||||| | ||||||||||||||| ||    ||||||||||||||||||||||  ||||||| ||||||||| |||||| |||||||    
T  40797 tttgttcctaataatgtgcctaactaatattaaaaatatttgtgatatttattatccaagaaattgaaataatttacataacaaaacaaattatatttta 40896  T
Q  156 gttgaaaatg 165  Q
    ||||||||||    
T  40897 gttgaaaatg 40906  T

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Target: scaffold0743 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 164
Target Start/End: Complemental strand, 3432 - 3318
Alignment:
Q  50 gggccctttgttcctaataatgtgcttcactaatattaaaaatgttgaccatatttattatccaagaaattgggataattttcataacaaagcaaattct 149  Q
    ||||||||||||||||||||| ||  | ||||||||||||||| |     |||||||||||| || ||||||||| ||||||||||||||| |||||| |    
T  3432 gggccctttgttcctaataatatgtcttactaatattaaaaatatatgtgatatttattatctaaaaaattgggagaattttcataacaaaacaaattat 3333  T
Q  150 attttagttgaaaat 164  Q
    |||||||||||||||    
T  3332 attttagttgaaaat 3318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1364 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold1364
Description:

Target: scaffold1364; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 873 - 934
Alignment:
Q  104 ttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaatg 165  Q
    ||||||||| |||||||| ||| |||||||||||||| ||||||||||||||||||||||||    
T  873 ttattatcctagaaattgagattattttcataacaaaacaaattctattttagttgaaaatg 934  T

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Target: scaffold0137 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 21544 - 21455
Alignment:
Q  76 tcactaatattaaaaatgttgaccatatttattatccaagaaa-ttgggataattttcataacaaagcaaattctattttagttgaaaat 164  Q
    |||||||||||||||||||||   |||||||| |||||| ||| ||||||||||| ||||||||||  |||||||||||||||| |||||    
T  21544 tcactaatattaaaaatgttggtgatatttatcatccaaaaaagttgggataattctcataacaaaataaattctattttagttaaaaat 21455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 98425 - 98364
Alignment:
Q  104 ttattatccaagaaattgggataattttcataacaaagcaaattctattttagttgaaaatg 165  Q
    ||||||| |||||||||| ||| |||||||||| |||  |||||||||||||||||||||||    
T  98425 ttattattcaagaaattgagattattttcataataaaataaattctattttagttgaaaatg 98364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 166
Target Start/End: Complemental strand, 60606 - 60538
Alignment:
Q  100 atatttattatccaagaaattgggataattttcataacaaagcaa---attctattttagttgaaaatgg 166  Q
    |||||||||| ||||||| ||| |||||||||||||||||| |||   ||| ||||||||||||||||||    
T  60606 atatttattacccaagaa-ttgagataattttcataacaaaacaaattattatattttagttgaaaatgg 60538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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