View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0812_low_135 (Length: 287)

Name: NF0812_low_135
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0812_low_135
NF0812_low_135
[»] chr5 (19 HSPs)
chr5 (15-227)||(10044722-10044938)
chr5 (137-227)||(17741135-17741224)
chr5 (139-211)||(11099443-11099515)
chr5 (164-227)||(25108627-25108690)
chr5 (164-227)||(25167719-25167782)
chr5 (163-226)||(39060412-39060475)
chr5 (145-226)||(4194987-4195068)
chr5 (139-211)||(3725256-3725328)
chr5 (137-225)||(35968776-35968864)
chr5 (159-226)||(16926077-16926144)
chr5 (164-227)||(25111139-25111202)
chr5 (164-227)||(25170230-25170293)
chr5 (139-227)||(20189946-20190035)
chr5 (163-227)||(5357807-5357871)
chr5 (139-202)||(25814443-25814506)
chr5 (15-49)||(10865846-10865880)
chr5 (145-227)||(42818957-42819039)
chr5 (145-226)||(38978959-38979040)
chr5 (141-209)||(28057798-28057866)
[»] chr2 (25 HSPs)
chr2 (91-227)||(24356165-24356301)
chr2 (139-227)||(38280161-38280249)
chr2 (88-225)||(36748204-36748341)
chr2 (139-227)||(9724932-9725020)
chr2 (139-205)||(40965090-40965156)
chr2 (137-227)||(43182326-43182416)
chr2 (91-227)||(7213529-7213665)
chr2 (147-226)||(25604416-25604493)
chr2 (139-211)||(28925813-28925885)
chr2 (137-225)||(39807269-39807357)
chr2 (139-209)||(30757533-30757603)
chr2 (145-226)||(314482-314563)
chr2 (139-227)||(9472476-9472564)
chr2 (137-211)||(18181176-18181250)
chr2 (137-227)||(18460542-18460632)
chr2 (139-211)||(23685029-23685101)
chr2 (139-211)||(28108340-28108412)
chr2 (152-227)||(1908472-1908547)
chr2 (139-226)||(2048347-2048434)
chr2 (145-227)||(4282990-4283072)
chr2 (104-170)||(7931413-7931479)
chr2 (160-226)||(31348566-31348632)
chr2 (170-227)||(7931492-7931549)
chr2 (115-172)||(33880221-33880278)
chr2 (139-186)||(3199990-3200038)
[»] chr8 (16 HSPs)
chr8 (106-227)||(14117516-14117637)
chr8 (91-227)||(28791362-28791498)
chr8 (91-227)||(41726575-41726709)
chr8 (101-227)||(29638355-29638481)
chr8 (139-227)||(40077715-40077803)
chr8 (145-226)||(2195523-2195603)
chr8 (145-226)||(14690015-14690096)
chr8 (139-211)||(44790387-44790459)
chr8 (145-229)||(32231357-32231441)
chr8 (145-225)||(33743832-33743912)
chr8 (139-227)||(39998217-39998305)
chr8 (91-170)||(5878142-5878221)
chr8 (139-211)||(2349420-2349493)
chr8 (139-204)||(28802844-28802909)
chr8 (139-211)||(38252402-38252475)
chr8 (139-211)||(5392119-5392191)
[»] chr7 (23 HSPs)
chr7 (106-227)||(45218090-45218211)
chr7 (137-227)||(24288477-24288565)
chr7 (139-227)||(2849309-2849397)
chr7 (137-225)||(30659443-30659531)
chr7 (145-227)||(32776037-32776119)
chr7 (153-227)||(28333225-28333298)
chr7 (145-227)||(34064269-34064350)
chr7 (139-211)||(30463086-30463158)
chr7 (139-213)||(5068266-5068340)
chr7 (137-224)||(36070162-36070249)
chr7 (137-227)||(39343636-39343724)
chr7 (140-227)||(27337837-27337926)
chr7 (161-226)||(9602916-9602981)
chr7 (161-226)||(9830487-9830552)
chr7 (145-226)||(32971989-32972070)
chr7 (145-226)||(47238272-47238353)
chr7 (145-225)||(21446492-21446572)
chr7 (139-211)||(27234573-27234644)
chr7 (140-211)||(37490584-37490655)
chr7 (145-211)||(33774015-33774080)
chr7 (145-226)||(29997000-29997081)
chr7 (139-187)||(5724673-5724721)
chr7 (159-227)||(38589788-38589856)
[»] chr1 (42 HSPs)
chr1 (101-227)||(12267559-12267685)
chr1 (137-227)||(36326169-36326259)
chr1 (139-227)||(27209933-27210021)
chr1 (137-225)||(36232753-36232841)
chr1 (139-227)||(50267404-50267492)
chr1 (139-225)||(21304773-21304858)
chr1 (139-227)||(28706589-28706677)
chr1 (135-227)||(51049562-51049653)
chr1 (115-186)||(16451686-16451757)
chr1 (115-186)||(16460839-16460910)
chr1 (159-226)||(29225394-29225461)
chr1 (137-227)||(31634259-31634347)
chr1 (160-227)||(50926801-50926868)
chr1 (139-209)||(52830380-52830450)
chr1 (163-227)||(11425859-11425923)
chr1 (139-211)||(36467161-36467233)
chr1 (139-202)||(49494129-49494192)
chr1 (138-227)||(2219413-2219502)
chr1 (137-225)||(14352622-14352713)
chr1 (139-212)||(26040738-26040811)
chr1 (145-226)||(26583783-26583864)
chr1 (150-211)||(26756046-26756107)
chr1 (145-226)||(29756114-29756195)
chr1 (137-182)||(50334023-50334068)
chr1 (137-227)||(37280965-37281051)
chr1 (137-225)||(9590568-9590658)
chr1 (139-226)||(32587820-32587907)
chr1 (139-185)||(45049087-45049131)
chr1 (139-226)||(49944987-49945074)
chr1 (139-212)||(10370150-10370224)
chr1 (145-227)||(37541085-37541167)
chr1 (145-226)||(2571418-2571497)
chr1 (148-193)||(7075398-7075443)
chr1 (145-186)||(39420681-39420722)
chr1 (163-227)||(4466144-4466208)
chr1 (195-227)||(5115847-5115879)
chr1 (137-173)||(5359244-5359280)
chr1 (163-227)||(16040131-16040195)
chr1 (145-225)||(16956599-16956679)
chr1 (193-225)||(18186226-18186258)
chr1 (195-227)||(52382408-52382440)
chr1 (139-227)||(52432366-52432454)
[»] chr3 (20 HSPs)
chr3 (138-227)||(32977754-32977843)
chr3 (137-227)||(53051080-53051170)
chr3 (137-227)||(1334744-1334834)
chr3 (139-227)||(51165006-51165094)
chr3 (137-227)||(38600769-38600859)
chr3 (138-227)||(53754028-53754117)
chr3 (139-211)||(9017871-9017943)
chr3 (139-209)||(54783035-54783105)
chr3 (145-226)||(9218200-9218280)
chr3 (137-227)||(54021421-54021511)
chr3 (142-211)||(33994727-33994796)
chr3 (139-211)||(48744329-48744402)
chr3 (139-227)||(48409638-48409728)
chr3 (139-226)||(54845481-54845568)
chr3 (150-227)||(41287316-41287393)
chr3 (139-211)||(2868644-2868716)
chr3 (139-211)||(17274751-17274823)
chr3 (139-211)||(17776959-17777031)
chr3 (139-211)||(19078260-19078332)
chr3 (139-211)||(54122189-54122261)
[»] chr4 (25 HSPs)
chr4 (89-227)||(29550642-29550780)
chr4 (101-225)||(10099652-10099776)
chr4 (137-227)||(25149505-25149596)
chr4 (91-227)||(44633210-44633346)
chr4 (101-225)||(28279893-28280017)
chr4 (137-227)||(35029089-35029179)
chr4 (137-227)||(48400594-48400684)
chr4 (137-227)||(49401710-49401800)
chr4 (139-224)||(34790916-34791001)
chr4 (139-227)||(42051621-42051709)
chr4 (137-227)||(35998080-35998170)
chr4 (139-227)||(4354502-4354592)
chr4 (145-227)||(13719829-13719911)
chr4 (139-201)||(42367869-42367931)
chr4 (145-226)||(8759834-8759915)
chr4 (145-226)||(28330849-28330930)
chr4 (145-226)||(38319966-38320047)
chr4 (139-212)||(41203806-41203879)
chr4 (139-211)||(42670348-42670420)
chr4 (139-226)||(17237098-17237185)
chr4 (142-201)||(54729452-54729511)
chr4 (137-227)||(55360311-55360401)
chr4 (139-211)||(8295099-8295171)
chr4 (139-211)||(41436551-41436623)
chr4 (139-227)||(47787812-47787900)
[»] scaffold0685 (1 HSPs)
scaffold0685 (89-227)||(6315-6453)
[»] chr6 (8 HSPs)
chr6 (137-227)||(3166071-3166161)
chr6 (140-227)||(3874016-3874103)
chr6 (145-210)||(34803676-34803741)
chr6 (139-211)||(31265849-31265921)
chr6 (163-227)||(33921458-33921522)
chr6 (189-227)||(8232326-8232364)
chr6 (163-227)||(9354429-9354493)
chr6 (145-225)||(20027638-20027718)
[»] scaffold0003 (1 HSPs)
scaffold0003 (137-227)||(352426-352514)
[»] scaffold0086 (1 HSPs)
scaffold0086 (139-227)||(5872-5958)
[»] scaffold0058 (1 HSPs)
scaffold0058 (139-211)||(14526-14598)


Alignment Details
Target: chr5 (Bit Score: 148; Significance: 4e-78; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 10044938 - 10044722
Alignment:
Q  15 atgaactcgtgaacaacgagggaatattgtaatgtttacataaaatatttttgcagcacatagtagtacctcaaa------ctactcgctcggtcctagt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||| |||| |||||||    
T  10044938 atgaactcgtgaacaacgagggaatattgtaatgtttacataaaatatttttgcagcacatagtagtacctcaaataaatgctactccctcg-tcctagt 10044840  T
Q  109 ttaacggagccaattttacattttattaagattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcat 208  Q
    |||||| |||||||||| ||||| ||||||| |||||||||||||||||||||| |||||||||| |||||||||||| |||||| ||||||||||||||    
T  10044839 ttaacg-agccaattttgcatttcattaagaataagaaaagtgtataaaggaaatagagagaaaaatagttttgagtgtatttttcaagtattgatgcat 10044741  T
Q  209 tcttttttatcataaatgt 227  Q
    |||||||||||||||||||    
T  10044740 tcttttttatcataaatgt 10044722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 17741135 - 17741224
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattc-ttttttatcataaatgt 227  Q
    ||||||| ||||||||||||| |||||||||| |||  ||||||||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  17741135 agattaaaaaaagtgtataaatgaaagagagaaaaa--tagttttgagtgcctttgttaagtattgatgcattctttttttatcataaatgt 17741224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 11099443 - 11099515
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    |||||||||| |||||||| ||||||||||||||| ||||||| ||||  ||| |||||||||| ||||||||    
T  11099443 attaagaaaaatgtataaatgaaagagagagaaaaatagttttaagtgtttttgttaagtattggtgcattct 11099515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 25108690 - 25108627
Alignment:
Q  164 agagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||| ||||||||||||  ||| |||||||||| ||||||||| ||||||||||||||    
T  25108690 agagagaaaaatagttttgagtgtctttgttaagtattgctgcattcttctttatcataaatgt 25108627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 25167782 - 25167719
Alignment:
Q  164 agagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||| ||||||||||||  ||| |||||||||| ||||||||| ||||||||||||||    
T  25167782 agagagaaaaatagttttgagtgtctttgttaagtattgctgcattcttctttatcataaatgt 25167719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 39060412 - 39060475
Alignment:
Q  163 gagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatg 226  Q
    ||||||||||| | ||||||||||||||| |||||||||| | ||||||| |||||||||||||    
T  39060412 gagagagaaaaatggttttgagtgcatttgttaagtattggtccattcttctttatcataaatg 39060475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 4195068 - 4194987
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatg 226  Q
    ||||||||||||   |||||||||||||| | |||||||||||  || | || ||||||||||||||| |||||||||||||    
T  4195068 aaaagtgtataagtaaaagagagagaaaaatggttttgagtgcccttatgaactattgatgcattcttctttatcataaatg 4194987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 3725328 - 3725256
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    |||||||||| |||||||||||| ||||||||||| | ||||| |||||  || |||||||||| ||||||||    
T  3725328 attaagaaaaatgtataaaggaaggagagagaaaaatggttttaagtgctattgttaagtattggtgcattct 3725256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 225
Target Start/End: Complemental strand, 35968864 - 35968776
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaat 225  Q
    ||||||| ||||||||||||| |||||||| |||||| ||||||||||||  ||| | |||||||  | ||||||| ||||| ||||||    
T  35968864 agattaaaaaaagtgtataaatgaaagagaaagaaaaatagttttgagtgtctttgtcaagtattagtacattcttctttattataaat 35968776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 16926077 - 16926144
Alignment:
Q  159 gaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatg 226  Q
    ||||||| ||||||| | ||||||||||| ||  |||||||||| ||||||||| |||||||||||||    
T  16926077 gaaagagtgagaaaaatggttttgagtgccttcgttaagtattggtgcattcttctttatcataaatg 16926144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 25111139 - 25111202
Alignment:
Q  164 agagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||| ||||||||||||  ||| | |||||||| ||||||||| ||||||||||||||    
T  25111139 agagagaaaaatagttttgagtgtctttgtcaagtattgctgcattcttctttatcataaatgt 25111202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 25170230 - 25170293
Alignment:
Q  164 agagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||| ||||||||||||  ||| | |||||||| ||||||||| ||||||||||||||    
T  25170230 agagagaaaaatagttttgagtgtctttgtcaagtattgctgcattcttctttatcataaatgt 25170293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 20190035 - 20189946
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaat-tagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||| || ||||| ||| |||||| ||||  ||||||| ||||||||| ||||||| |||||||||||   |||||||||||||    
T  20190035 attaagaaaaatgcataaatgaaggagagataaaaaatagttttaagtgcatttgttaagtactgatgcattctccattatcataaatgt 20189946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 5357807 - 5357871
Alignment:
Q  163 gagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||||||| | ||||||||||  ||| |||||||||| | ||||||| ||||||||||||||    
T  5357807 gagagagaaaaatggttttgagtgtctttgttaagtattggttcattcttctttatcataaatgt 5357871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 25814506 - 25814443
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattg 202  Q
    |||||||||| || ||||| ||| ||||||||||| ||||||| |||||| || ||||||||||    
T  25814506 attaagaaaaatgcataaatgaaggagagagaaaaatagttttaagtgcacttgttaagtattg 25814443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 10865880 - 10865846
Alignment:
Q  15 atgaactcgtgaacaacgagggaatattgtaatgt 49  Q
    |||||||||||||||||||| ||||||||||||||    
T  10865880 atgaactcgtgaacaacgagtgaatattgtaatgt 10865846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 42819039 - 42818957
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||||||||   ||||||| |||||| | |||||||||||  || ||||  |||| ||||||||| ||||||||||||||    
T  42819039 aaaagtgtataagtaaaagagaaagaaaaatggttttgagtgcccttattaatcattggtgcattcttctttatcataaatgt 42818957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 38979040 - 38978959
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatg 226  Q
    ||||||||| || ||||||||| |||||| | |||||||||||  || |||| ||||| | ||||| | |||||||||||||    
T  38979040 aaaagtgtacaagggaaagagatagaaaaatggttttgagtgcccttattaactattggtacattcctctttatcataaatg 38978959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 28057798 - 28057866
Alignment:
Q  141 taagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcatt 209  Q
    |||||||| |||||||| ||| ||||||||||| || |||| | || | || |||||||||||||||||    
T  28057798 taagaaaaatgtataaatgaaggagagagaaaaataattttaaatgtacttgttaagtattgatgcatt 28057866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 91 - 227
Target Start/End: Complemental strand, 24356301 - 24356165
Alignment:
Q  91 tactcgctcggtcctagtttaacggagccaattttacattttattaagattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcatt 190  Q
    ||||| ||| |||| |||||||| ||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  24356301 tactccctccgtcccagtttaactgagccaattttccatttcacacagattaagaaaagtgtataaaggaaagagagagaaaactagttttgagtgcctt 24356202  T
Q  191 ttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||| |||||||||||||||||| ||||||||||||||    
T  24356201 tttcaagtattgatgcattcttctttatcataaatgt 24356165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 38280161 - 38280249
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||| ||||||||||||| |||||||||| | ||||||||||| |||||||| ||||| ||||||||| ||||||||||||||    
T  38280161 attaagaaaaatgtataaaggaaatagagagaaaaatggttttgagtgccttttttaaatattggtgcattcttctttatcataaatgt 38280249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 225
Target Start/End: Complemental strand, 36748341 - 36748204
Alignment:
Q  88 aactactcgctcggtcctagtttaacggagccaattttacattttattaagattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgc 187  Q
    |||||||| ||| |||| |||||||| ||| || |||| ||||| |   | ||||||||||||||||||| |||| |||||||||| ||||||||||| |    
T  36748341 aactactccctccgtcccagtttaactgagtcagttttccatttcacacatattaagaaaagtgtataaaagaaatagagagaaaaatagttttgagttc 36748242  T
Q  188 attttttaagtattgatgcattcttttttatcataaat 225  Q
     ||||| |||||||| ||| || || ||||||||||||    
T  36748241 ctttttcaagtattggtgcgttattctttatcataaat 36748204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 9725020 - 9724932
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||||||||||||||| |||||||||||| || |  |||||||||| ||| | |||||||| ||||||||| ||||||||||||||    
T  9725020 attaagaaaagtgtataaatgaaagagagagagaaatgattttgagtgcttttatcaagtattggtgcattcttctttatcataaatgt 9724932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 40965156 - 40965090
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatg 205  Q
    |||||||||| |||||||| ||| ||||||||||| ||||||| ||||||||| |||||||||||||    
T  40965156 attaagaaaaatgtataaatgaaggagagagaaaaatagttttaagtgcatttgttaagtattgatg 40965090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 43182416 - 43182326
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||||| ||||||||||||||||||| |||| || |||||||||  ||| | || ||||| ||||||||| ||||| ||||||||    
T  43182416 agattaagaaaaatgtataaaggaaagagagaaaaaaataattttgagtgtctttgtcaaatattggtgcattcttctttattataaatgt 43182326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 227
Target Start/End: Complemental strand, 7213665 - 7213529
Alignment:
Q  91 tactcgctcggtcctagtttaacggagccaattttacattttattaagattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcatt 190  Q
    ||||| |||||||| |||||||  |||||| |||  ||||| |   |||||||||||| |||||||| |||| |||||||||| |  |||||||||| ||    
T  7213665 tactccctcggtcccagtttaattgagccattttctcatttcacacagattaagaaaaatgtataaatgaaatagagagaaaaatgattttgagtgcctt 7213566  T
Q  191 ttttaagtattgatgcattcttttttatcataaatgt 227  Q
    | | || ||||| ||||||||| ||||| ||||||||    
T  7213565 tatcaaatattggtgcattcttctttattataaatgt 7213529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 25604493 - 25604416
Alignment:
Q  147 aagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatg 226  Q
    ||||||||||  ||||||||||||||| ||||||||||||  | || ||||||||| |||||||||| ||||||||||||    
T  25604493 aagtgtataagtgaaagagagagaaaaatagttttgagtg--tcttgtaagtattggtgcattctttcttatcataaatg 25604416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 28925813 - 28925885
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    |||||||||| ||||||||  || ||||||||||| ||||||| |||||| || |||||||||||||||||||    
T  28925813 attaagaaaaatgtataaataaaggagagagaaaaatagttttaagtgcacttgttaagtattgatgcattct 28925885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 225
Target Start/End: Complemental strand, 39807357 - 39807269
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaat 225  Q
    |||||||||||| ||||||||  ||||||| |||||| | ||||||||||| ||| | |||||||| ||||||||| ||||| ||||||    
T  39807357 agattaagaaaaatgtataaatcaaagagaaagaaaaatggttttgagtgcctttgtgaagtattggtgcattcttctttataataaat 39807269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 30757533 - 30757603
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcatt 209  Q
    |||||||||| |||||||| ||| ||||||||||| ||||||| |||||| || ||||||||| |||||||    
T  30757533 attaagaaaaatgtataaatgaaggagagagaaaaatagttttaagtgcacttgttaagtattaatgcatt 30757603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 314563 - 314482
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatg 226  Q
    ||||||||||||  ||||||||||| ||| | |||||||||||  || | || ||||||||||||||| |||||||||||||    
T  314563 aaaagtgtataagtgaaagagagaggaaaatggttttgagtgcccttatcaactattgatgcattcttctttatcataaatg 314482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 9472564 - 9472476
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||| |||||||| |||||||| |||| | | |||| |||||  ||| | |||||||||| ||||||| ||||||||||||||    
T  9472564 attaagaaaaatgtataaatgaaagagatagaacaatggtttagagtgtctttgtcaagtattgatacattcttctttatcataaatgt 9472476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 18181176 - 18181250
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    ||||||||||||||||||||  || |||||||||||| | ||||| ||||| ||| ||| |||||| ||||||||    
T  18181176 agattaagaaaagtgtataagtgagagagagagaaaaatggttttaagtgcttttgttatgtattggtgcattct 18181250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 18460632 - 18460542
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||||||||||||||||| |||||||| |||||| |  |||||||||  ||| | || ||||| | ||||||| ||| ||||||||||    
T  18460632 agattaagaaaagtgtataaatgaaagagatagaaaaatgattttgagtgtctttgtcaaatattggtacattcttctttgtcataaatgt 18460542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 23685101 - 23685029
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    |||||||||| ||||||||  || ||||||||||||||||||| ||||  ||| |||||||||  ||||||||    
T  23685101 attaagaaaaatgtataaataaaggagagagaaaattagttttaagtgtttttgttaagtattagtgcattct 23685029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 28108340 - 28108412
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    ||||||||||   |||||| ||| ||||||||||| ||||||| |||||| || |||||||||| ||||||||    
T  28108340 attaagaaaaaattataaatgaaggagagagaaaaatagttttaagtgcacttgttaagtattggtgcattct 28108412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 1908472 - 1908547
Alignment:
Q  152 tataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||| |||| |||||||||| | ||||||||||  ||||  |||||||  ||||||||| ||||||||||||||    
T  1908472 tataaatgaaatagagagaaaaatggttttgagtgtcttttgcaagtattagtgcattcttctttatcataaatgt 1908547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 2048434 - 2048347
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatg 226  Q
    ||||| |||| |||||||  ||||||||||||||| | ||| |||||||  || | || ||||| ||||||||| |||||||||||||    
T  2048434 attaaaaaaaatgtataagtgaaagagagagaaaaatggttatgagtgctcttatcaactattggtgcattcttgtttatcataaatg 2048347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 4282990 - 4283072
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||||||||   |||||||||||||| | ||||||| |||  || | |||||||| ||||||| | ||||||||||||||    
T  4282990 aaaagtgtataagtaaaagagagagaaaaatggttttgaatgcccttatcaagtattggtgcattcctctttatcataaatgt 4283072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 170
Target Start/End: Original strand, 7931413 - 7931479
Alignment:
Q  104 ctagtttaacggagccaattttacattttattaagattaagaaaagtgtataaaggaaagagagaga 170  Q
    |||||||||| |||| | |||| ||||| |   |||||||||||||||||||||||||| |||||||    
T  7931413 ctagtttaactgagctagttttccatttcacacagattaagaaaagtgtataaaggaaatagagaga 7931479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 31348632 - 31348566
Alignment:
Q  160 aaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatg 226  Q
    |||||||||||||| | | |||||||||  || | || ||||| |||||||||||||||||||||||    
T  31348632 aaagagagagaaaaatgggtttgagtgcccttatcaactattggtgcattcttttttatcataaatg 31348566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 7931492 - 7931549
Alignment:
Q  170 aaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||| ||||||||||||  ||||| |||||||  ||||||||| ||||||||||||||    
T  7931492 aaaaatagttttgagtgtctttttcaagtattagtgcattcttctttatcataaatgt 7931549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 33880278 - 33880221
Alignment:
Q  115 gagccaattttacattttattaagattaagaaaagtgtataaaggaaagagagagaaa 172  Q
    |||||| |||| ||||||||  |||||||||||| || ||||| ||||||||||||||    
T  33880278 gagccattttttcattttatacagattaagaaaaatgcataaatgaaagagagagaaa 33880221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 3200038 - 3199990
Alignment:
Q  139 attaagaaaag-tgtataaaggaaagagagagaaaattagttttgagtg 186  Q
    ||||||||||| |||||||| ||||||||||||||| | ||||||||||    
T  3200038 attaagaaaagatgtataaatgaaagagagagaaaaatggttttgagtg 3199990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 14117637 - 14117516
Alignment:
Q  106 agtttaacggagccaattttacattttattaagattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatg 205  Q
    |||||||| ||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||    
T  14117637 agtttaactgagccaattttccatttcacagagattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcctttttcaagtattggtg 14117538  T
Q  206 cattcttttttatcataaatgt 227  Q
     |||||| ||||||||||||||    
T  14117537 tattcttctttatcataaatgt 14117516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 91 - 227
Target Start/End: Complemental strand, 28791498 - 28791362
Alignment:
Q  91 tactcgctcggtcctagtttaacggagccaattttacattttattaagattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcatt 190  Q
    ||||| ||| |||| |||||||| |||||| |||| ||||| |   |||||||||||||||||||||| |||||||||||||| ||||||||||||| ||    
T  28791498 tactccctccgtcccagtttaactgagccagttttccatttcacacagattaagaaaagtgtataaagtaaagagagagaaaaatagttttgagtgcctt 28791399  T
Q  191 ttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||| |||||||| ||||||||| ||||||||||||||    
T  28791398 tttcaagtattggtgcattcttctttatcataaatgt 28791362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 227
Target Start/End: Complemental strand, 41726709 - 41726575
Alignment:
Q  91 tactcgctcggtcctagtttaacggagccaattttacattttattaagattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcatt 190  Q
    ||||| ||| |||| |||||||| || | |||||| ||||| |   |||||||||||| |||||||| |||||||||| | |  ||||||||||||| ||    
T  41726709 tactccctccgtcccagtttaactgaactaattttccatttcacacagattaagaaaaatgtataaaagaaagagagaaata--tagttttgagtgcctt 41726612  T
Q  191 ttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||| |||||||| ||||||||| ||||||||||||||    
T  41726611 tttcaagtattgttgcattcttctttatcataaatgt 41726575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 101 - 227
Target Start/End: Complemental strand, 29638481 - 29638355
Alignment:
Q  101 gtcctagtttaacggagccaattttacattttattaagattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtat 200  Q
    ||||||||||||| |||||| |||  ||||| |   ||||||||||||||||||||| |||||| |||||||| | ||||||| ||| ||| | ||||||    
T  29638481 gtcctagtttaaccgagccactttaccatttcacacagattaagaaaagtgtataaatgaaagaaagagaaaaatggttttgaatgcctttgtcaagtat 29638382  T
Q  201 tgatgcattcttttttatcataaatgt 227  Q
    || | |||| || ||||||||||||||    
T  29638381 tggttcattattctttatcataaatgt 29638355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 40077715 - 40077803
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||||||||||||||| |||||||||| |||| |  |||||||||  ||| | |||||||| ||||||||| ||||||||||||||    
T  40077715 attaagaaaagtgtataaatgaaagagagaaaaaaatgattttgagtgtctttgtcaagtattggtgcattcttctttatcataaatgt 40077803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 2195603 - 2195523
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatg 226  Q
    ||||||||||||  ||||||||||||||| ||||||||||||   || |||||||||| |||||||||| ||||||||||||    
T  2195603 aaaagtgtataagtgaaagagagagaaaaatagttttgagtg-tcttgttaagtattggtgcattctttcttatcataaatg 2195523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 14690096 - 14690015
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatg 226  Q
    ||||||||||||  ||||||||||||||| | ||||||||||   || | || ||||| |||||||||||||||||||||||    
T  14690096 aaaagtgtataagtgaaagagagagaaaaatggttttgagtgtccttatcaactattggtgcattcttttttatcataaatg 14690015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 44790387 - 44790459
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    ||||||| || |||||||| ||| ||||||||||| ||||||| |||||| || |||||||||| ||||||||    
T  44790387 attaagacaaatgtataaatgaaggagagagaaaaatagttttaagtgcacttgttaagtattggtgcattct 44790459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 32231357 - 32231441
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgttg 229  Q
    |||| |||||||  ||||||||||| ||| | |||||||||||  || | || |||||||| |||||| ||||||||||||||||    
T  32231357 aaaaatgtataagtgaaagagagaggaaaatggttttgagtgcccttatcaactattgatgtattcttctttatcataaatgttg 32231441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 225
Target Start/End: Complemental strand, 33743912 - 33743832
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaat 225  Q
    ||||||||||||| ||||||||||||||| | | |||||||| | || | || ||||  ||||||||| ||||||||||||    
T  33743912 aaaagtgtataaatgaaagagagagaaaaatgggtttgagtgtacttatcaactatttgtgcattcttctttatcataaat 33743832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 39998305 - 39998217
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||||||| ||||||| ||||||||||||||| |  |||| ||||  ||| | |||||||   |||||||| ||||||||||||||    
T  39998305 attaagaaaagagtataaatgaaagagagagaaaaatgattttaagtgtctttatcaagtatttgagcattcttctttatcataaatgt 39998217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 170
Target Start/End: Original strand, 5878142 - 5878221
Alignment:
Q  91 tactcgctcggtcctagtttaacggagccaattttacattttattaagattaagaaaagtgtataaaggaaagagagaga 170  Q
    ||||| ||| ||||||||||||| ||  ||||||  ||||| |   ||||||||||||||||||||| ||||||||||||    
T  5878142 tactccctctgtcctagtttaactgaatcaatttaccatttcacatagattaagaaaagtgtataaatgaaagagagaga 5878221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 2349493 - 2349420
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagag-aaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    ||||| |||| |||||||| ||| ||||||| |||| ||||||| ||||||||| |||||||||  ||||||||    
T  2349493 attaaaaaaaatgtataaatgaaggagagagaaaaaatagttttaagtgcatttgttaagtatttgtgcattct 2349420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 28802909 - 28802844
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgat 204  Q
    ||||||| || |||||||| ||||||||||||||| | ||||| |||||  || ||||||||||||    
T  28802909 attaagacaaatgtataaatgaaagagagagaaaaatggttttaagtgctcttgttaagtattgat 28802844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 38252402 - 38252475
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagag-aaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    |||||||||| |||||||| ||| ||||||| |||| ||||||| |||||| || |||||||||  ||||||||    
T  38252402 attaagaaaaatgtataaatgaaggagagagaaaaaatagttttaagtgcacttgttaagtattagtgcattct 38252475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 5392191 - 5392119
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    ||||||| || |||||||| ||| ||||||||||| | ||||| ||||| ||| | |||||||| ||||||||    
T  5392191 attaagacaaatgtataaatgaaggagagagaaaaatggttttaagtgcttttgtcaagtattggtgcattct 5392119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 45218090 - 45218211
Alignment:
Q  106 agtttaacggagccaattttacattttattaagattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatg 205  Q
    |||||||| ||||||||||| ||||| |   | ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||| ||    
T  45218090 agtttaactgagccaattttccatttcacacaaattaagaaaagtgtataaaggaaagagagagaaaaatagttttgagtgcctttttcaagtattggtg 45218189  T
Q  206 cattcttttttatcataaatgt 227  Q
    ||||||| ||||||||||||||    
T  45218190 cattcttctttatcataaatgt 45218211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 24288565 - 24288477
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||||||||||||||| ||||||||| |||  ||||||||||||| ||||| |||||||  ||||||||| ||||||||||||||    
T  24288565 agattaagaaaagtgtataaagtaaagagagataaa--tagttttgagtgcctttttcaagtatttgtgcattcttctttatcataaatgt 24288477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 2849397 - 2849309
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||| |||||||| ||||||||||||||| |||||||| |||  ||| | |||||||| ||||||||| ||||||||||||||    
T  2849397 attaagaaaaatgtataaatgaaagagagagaaaaatagttttgcgtgtctttgtcaagtattggtgcattcttctttatcataaatgt 2849309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 137 - 225
Target Start/End: Original strand, 30659443 - 30659531
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaat 225  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| | || ||||  ||| ||||| ||||||||||||    
T  30659443 agattaagaaaagtgtacaaaggaaagagagagaaaaatagttttgagtgcctttgtcaaatatttgtgcgttcttctttatcataaat 30659531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 32776119 - 32776037
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||||||||  ||| ||||||||||| | ||||||||||| ||| |||||||||| ||||||||| ||||||||||||||    
T  32776119 aaaagtgtataagtgaaggagagagaaaaatggttttgagtgcctttgttaagtattggtgcattcttctttatcataaatgt 32776037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 28333298 - 28333225
Alignment:
Q  153 ataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||| ||||||||||||||| |||||||||||| | || ||||||||||||||||| ||| |||||||||||||    
T  28333298 ataaatgaaagagagagaaaaatagttttgagtg-acttgttaagtattgatgcattatttcttatcataaatgt 28333225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 34064350 - 34064269
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||||||||| |||| |||||||||| ||||||||||||   || |||||||||| |||||||||| |||||||||||||    
T  34064350 aaaagtgtataaatgaaatagagagaaaaatagttttgagtg-tcttgttaagtattggtgcattctttcttatcataaatgt 34064269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 30463158 - 30463086
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    |||||||||| |||||||| ||| ||||||||||| ||||||| |||||| || |||||||||| ||||||||    
T  30463158 attaagaaaaatgtataaatgaatgagagagaaaaatagttttaagtgcacttgttaagtattggtgcattct 30463086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 5068266 - 5068340
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttt 213  Q
    ||||||||||||||||||| |||||| ||| |||| |||| |||||||  ||| |||||||||| ||||||||||    
T  5068266 attaagaaaagtgtataaatgaaagaaagaaaaaaatagtattgagtgtttttattaagtattggtgcattcttt 5068340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 224
Target Start/End: Complemental strand, 36070249 - 36070162
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaa 224  Q
    |||||||||||| |||||||| ||||||||||| ||| | ||||||||||  ||| | || ||||| |||||| || |||||||||||    
T  36070249 agattaagaaaaatgtataaatgaaagagagaggaaaatggttttgagtgtctttgtcaaatattggtgcattattctttatcataaa 36070162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 39343636 - 39343724
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||| |||||||||||||||| ||||||||||  ||  | ||||||||||||||| | |||||||  || |||||| ||||||||||||||    
T  39343636 agataaagaaaagtgtataaatgaaagagagaacaa--tcgttttgagtgcatttgtcaagtatttgtgtattcttctttatcataaatgt 39343724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 27337837 - 27337926
Alignment:
Q  140 ttaagaaaagtgtataaaggaaagagaga--gaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||||||||||||||  |||||||||  || || ||||||||||||  ||| | |||||||| |||||| || ||||||||||||||    
T  27337837 ttaagaaaagtgtataaataaaagagagaaagagaaatagttttgagtgtctttgtcaagtattggtgcattattctttatcataaatgt 27337926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 9602981 - 9602916
Alignment:
Q  161 aagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatg 226  Q
    |||||||| |||| ||| ||||| |||  || |||| |||||||||||||||||||||||||||||    
T  9602981 aagagagaaaaaaataggtttgaatgcgcttgttaactattgatgcattcttttttatcataaatg 9602916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 9830552 - 9830487
Alignment:
Q  161 aagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatg 226  Q
    |||||||| |||| ||| ||||| |||  || |||| |||||||||||||||||||||||||||||    
T  9830552 aagagagaaaaaaataggtttgaatgcgcttgttaactattgatgcattcttttttatcataaatg 9830487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 32971989 - 32972070
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatg 226  Q
    |||| |||||||  ||||||||||||||| | |||||||||||  || | || ||||| ||||||||||||| |||||||||    
T  32971989 aaaaatgtataagtgaaagagagagaaaaatggttttgagtgcccttatcaactattggtgcattcttttttgtcataaatg 32972070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 47238353 - 47238272
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatg 226  Q
    ||||||||||||  ||||||||||||||| | |||||||||||  || | ||  |||| ||||||||| |||||||||||||    
T  47238353 aaaagtgtataagtgaaagagagagaaaaatggttttgagtgcccttatcaacaattggtgcattcttctttatcataaatg 47238272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 225
Target Start/End: Complemental strand, 21446572 - 21446492
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaat 225  Q
    |||| |||||||  ||||||||||||||| || |||||||||   || |||| ||||  ||||||||||||||||||||||    
T  21446572 aaaattgtataagtgaaagagagagaaaaataattttgagtgtccttattaattattagtgcattcttttttatcataaat 21446492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 27234644 - 27234573
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    |||||||||| |||||||| ||| || |||||||||| ||||| ||||  ||| |||||||||||||||||||    
T  27234644 attaagaaaaatgtataaatgaatgacagagaaaatt-gttttaagtgtttttgttaagtattgatgcattct 27234573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 37490584 - 37490655
Alignment:
Q  140 ttaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    ||||||||| |||||||| ||| ||||||||||| |  |||| ||||  |||||||||||||| ||||||||    
T  37490584 ttaagaaaaatgtataaatgaaggagagagaaaaatgattttaagtgttttttttaagtattggtgcattct 37490655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 33774015 - 33774080
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    ||||||||||||  ||||||||||||||| ||||||||||||   || ||||||||||||| |||||    
T  33774015 aaaagtgtataagtgaaagagagagaaaaatagttttgagtg-tcttgttaagtattgatgtattct 33774080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 29997000 - 29997081
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatg 226  Q
    ||||||||||||  |||||||| |||||| | ||||||| ||   || |||| ||||| ||||||||| |||||||||||||    
T  29997000 aaaagtgtataagtgaaagagaaagaaaaatggttttgaatgtccttgttaattattggtgcattcttctttatcataaatg 29997081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 5724673 - 5724721
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgc 187  Q
    |||||||||| |||||||| ||| ||||||||||| ||||||| |||||    
T  5724673 attaagaaaaatgtataaatgaaggagagagaaaaatagttttaagtgc 5724721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 38589856 - 38589788
Alignment:
Q  159 gaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||||||||||| | ||||||| |||  || | || ||||| ||||||||| ||||||||||||||    
T  38589856 gaaagagagagaaaaatggttttgaatgcccttatcaactattggtgcattcttctttatcataaatgt 38589788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 101 - 227
Target Start/End: Original strand, 12267559 - 12267685
Alignment:
Q  101 gtcctagtttaacggagccaattttacattttattaagattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtat 200  Q
    |||| |||||||| ||||||||||| | ||| |  |||||||||| |||||||||||| ||||||| |||||| ||||||||||||||||||| ||||||    
T  12267559 gtcccagtttaaccgagccaatttttcgtttcacaaagattaagataagtgtataaagaaaagagaaagaaaaatagttttgagtgcatttttcaagtat 12267658  T
Q  201 tgatgcattcttttttatcataaatgt 227  Q
    || | ||||||| ||||||||||||||    
T  12267659 tggtacattcttctttatcataaatgt 12267685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 36326169 - 36326259
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||||||||||||||||| ||||||||||||| | | ||||||||||  ||| | || ||||| ||||||||| ||||||||||||||    
T  36326169 agattaagaaaagtgtataaatgaaagagagagaacaatggttttgagtgtctttgtcaaatattggtgcattcttgtttatcataaatgt 36326259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 27209933 - 27210021
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||||||||||||||| ||||||||||||||| |  |||||||||  |||   |||||||| ||||||||| ||||||||||||||    
T  27209933 attaagaaaagtgtataaatgaaagagagagaaaaatgattttgagtgtctttgacaagtattggtgcattcttctttatcataaatgt 27210021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 225
Target Start/End: Original strand, 36232753 - 36232841
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaat 225  Q
    ||||||||||||||||||||| ||||||||||||||| |  |||||||||  |||   |||||||| ||||||||| ||||||||||||    
T  36232753 agattaagaaaagtgtataaacgaaagagagagaaaaatgattttgagtgtctttgacaagtattggtgcattcttctttatcataaat 36232841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 50267404 - 50267492
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||| |||||||| ||||| ||||||||| ||||||| |||||| || |||||||||| ||||||||   |||||||||||||    
T  50267404 attaagaaaaatgtataaatgaaagtgagagaaaaatagttttaagtgcacttgttaagtattggtgcattctccattatcataaatgt 50267492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 21304773 - 21304858
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaat 225  Q
    |||||||||| |||||||| |||||||||| |||||| ||||||||||  ||| | ||||||||||||||| || ||||||||||||    
T  21304773 attaagaaaaatgtataaatgaaagagagataaaatt-gttttgagtgtctttgtcaagtattgatgcatttttctttatcataaat 21304858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 28706589 - 28706677
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||| |||| |||||||| |||  |||||||||| | ||||||||||| ||| | ||||||||||||||| || ||||||||||||||    
T  28706589 attaaaaaaaatgtataaatgaataagagagaaaaatggttttgagtgcctttgtcaagtattgatgcatttttctttatcataaatgt 28706677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 51049653 - 51049562
Alignment:
Q  135 taagattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||||||||||||||||  |||||||||||||| | ||||||| ||  ||| | |||| ||  ||||||||||||||||||||||||    
T  51049653 taagattaagaaaagtgtataaataaaagagagagaaaaatggttttgaatgtctttatcaagt-ttagtgcattcttttttatcataaatgt 51049562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 16451757 - 16451686
Alignment:
Q  115 gagccaattttacattttattaagattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtg 186  Q
    ||||||||||| ||||| ||  | |||||||||| |||||||||||||||||||||||| | ||||||||||    
T  16451757 gagccaattttccatttcatacatattaagaaaaatgtataaaggaaagagagagaaaaatggttttgagtg 16451686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 16460910 - 16460839
Alignment:
Q  115 gagccaattttacattttattaagattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtg 186  Q
    ||||||||||| ||||| ||  | |||||||||| |||||||||||||||||||||||| | ||||||||||    
T  16460910 gagccaattttccatttcatacatattaagaaaaatgtataaaggaaagagagagaaaaatggttttgagtg 16460839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 29225394 - 29225461
Alignment:
Q  159 gaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatg 226  Q
    ||||||| ||||||| |  |||||||||| ||| |||||||||| |||||||||||||||||||||||    
T  29225394 gaaagagtgagaaaaatgattttgagtgcctttgttaagtattggtgcattcttttttatcataaatg 29225461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 31634259 - 31634347
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||||| ||||||||  |||||||||||||| | |||  |||||  ||| |||||||||||||||||| | ||||||||||||||    
T  31634259 agattaagaaaaatgtataaataaaagagagagaaaaatggtt--gagtgtctttgttaagtattgatgcattcctctttatcataaatgt 31634347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 50926868 - 50926801
Alignment:
Q  160 aaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||||||| | ||||||| ||||||| | |||||||| ||||||||| ||||||||||||||    
T  50926868 aaagagagagaaaaatggttttgaatgcatttgtcaagtattggtgcattcttctttatcataaatgt 50926801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 52830380 - 52830450
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcatt 209  Q
    ||||| |||| |||||||| ||| ||||||||||| || |||||||||||||| |||||||||| ||||||    
T  52830380 attaaaaaaaatgtataaatgaaggagagagaaaaataattttgagtgcatttgttaagtattggtgcatt 52830450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 11425859 - 11425923
Alignment:
Q  163 gagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||||||| ||||||||||||  ||| |||||||||| | ||||||| ||||||||||||||    
T  11425859 gagagagaaaaatagttttgagtgtctttgttaagtattggtccattcttctttatcataaatgt 11425923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 36467161 - 36467233
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    |||||||||| |||||||| ||| ||||||||||| ||||||| |||||| || |||||||||| || |||||    
T  36467161 attaagaaaaatgtataaatgaatgagagagaaaaatagttttaagtgcacttgttaagtattggtggattct 36467233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 49494129 - 49494192
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattg 202  Q
    |||||||||| |||||||| ||||||||||||||| ||||||| |||||| || |||| |||||    
T  49494129 attaagaaaaatgtataaatgaaagagagagaaaaatagttttaagtgcacttgttaaatattg 49494192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 2219413 - 2219502
Alignment:
Q  138 gattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||| ||| |||||||| ||||||||||||| | |  |||||||||  ||| | ||  |||||||||||||| ||||||||||||||    
T  2219413 gattaagtaaattgtataaatgaaagagagagaataatgattttgagtgtctttataaaagattgatgcattcttctttatcataaatgt 2219502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 225
Target Start/End: Complemental strand, 14352713 - 14352622
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagag---aaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaat 225  Q
    ||||||||||||||||||||| |||| ||||||   |||| | ||||||||||  ||| | |||||||| ||||||||| |||||| |||||    
T  14352713 agattaagaaaagtgtataaatgaaatagagagaaaaaaaatggttttgagtgtctttgtcaagtattggtgcattcttctttatcgtaaat 14352622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 26040811 - 26040738
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattctt 212  Q
    ||||||||||||||||||| |||||||  |||||| | ||||||||||  ||| | |||||||| |||||||||    
T  26040811 attaagaaaagtgtataaatgaaagagttagaaaaatggttttgagtgtttttgtcaagtattggtgcattctt 26040738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 26583864 - 26583783
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatg 226  Q
    ||||||||||||  ||||||||||||||| |   ||||||||| ||| | || ||||| ||||||||| |||||||||||||    
T  26583864 aaaagtgtataagtgaaagagagagaaaaatgagtttgagtgcctttatcaactattggtgcattcttctttatcataaatg 26583783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 26756107 - 26756046
Alignment:
Q  150 tgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    |||||||| ||| ||||||| ||| ||||||| |||||| || |||||||||||||||||||    
T  26756107 tgtataaatgaatgagagaggaaaatagttttaagtgcacttgttaagtattgatgcattct 26756046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 29756114 - 29756195
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatg 226  Q
    ||||||||||||  ||||||||||||||| | | |||||||||  || | || ||||| ||||||||| |||||||||||||    
T  29756114 aaaagtgtataagtgaaagagagagaaaaatgggtttgagtgcccttatcaactattggtgcattcttctttatcataaatg 29756195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 50334068 - 50334023
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaattagttttg 182  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||||    
T  50334068 agattaagaaaagtgtataaacgaaagaaagagaaaaatagttttg 50334023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 37280965 - 37281051
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||||| ||| |||| ||||||||||   ||| | |||||||||  ||| | |||||||| ||||||||||||||||||||||||    
T  37280965 agattaagaaaaatgtgtaaatgaaagagaga---aatga-ttttgagtgtctttgtcaagtattggtgcattcttttttatcataaatgt 37281051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 225
Target Start/End: Complemental strand, 9590658 - 9590568
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaat--tagttttgagtgcattttttaagtattgatgcattcttttttatcataaat 225  Q
    |||||||||||| |||||||| |||||||||||| |||  | ||||| ||||| ||| | |||||||  |||||| || ||||||||||||    
T  9590658 agattaagaaaattgtataaatgaaagagagagataataatggttttaagtgcctttgtcaagtatttgtgcattattatttatcataaat 9590568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 32587907 - 32587820
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatg 226  Q
    |||||||||| |||||||| ||| | ||||||||| || |||| ||||  ||| ||||||||||||||||| |   ||||||||||||    
T  32587907 attaagaaaaatgtataaatgaaggtgagagaaaaataattttaagtgtttttgttaagtattgatgcattttccattatcataaatg 32587820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 45049131 - 45049087
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagt 185  Q
    ||||||||||||||||||||||||||  ||||||| |||||||||||    
T  45049131 attaagaaaagtgtataaaggaaaga--gagaaaaatagttttgagt 45049087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 49945074 - 49944987
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatg 226  Q
    |||||||||| |||||||| |||  |||||||||| | ||||| |||||  || |||||||||  ||||||||| | |||||||||||    
T  49945074 attaagaaaaatgtataaatgaagaagagagaaaaatggttttaagtgctcttgttaagtatttgtgcattcttctctatcataaatg 49944987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 10370150 - 10370224
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagag-aaaattagttttgagtgcattttttaagtattgatgcattctt 212  Q
    |||||||||| ||||||||  || ||||||| |||| ||||||| ||||| ||| ||||||||| ||||||||||    
T  10370150 attaagaaaaatgtataaataaaggagagagaaaaaatagttttaagtgcttttgttaagtattaatgcattctt 10370224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 37541085 - 37541167
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||||||||  ||||||||||||||| | ||||||| ||  ||| | || ||||| ||||||||| ||||| ||||||||    
T  37541085 aaaagtgtataagtgaaagagagagaaaaatggttttgaatgtctttatcaactattggtgcattcttctttattataaatgt 37541167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 2571497 - 2571418
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatg 226  Q
    |||| |||||||| ||||||||||||||| ||||||||||||   || |||||||||| |||||| ||| ||||| ||||||    
T  2571497 aaaaatgtataaatgaaagagagagaaaa-tagttttgagtg-tcttgttaagtattggtgcattatttcttatcctaaatg 2571418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 7075398 - 7075443
Alignment:
Q  148 agtgtataaaggaaagagagagaaaattagttttgagtgcattttt 193  Q
    |||||||||||||||| ||||||||| || |||||||||| |||||    
T  7075398 agtgtataaaggaaagggagagaaaaataattttgagtgccttttt 7075443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 39420722 - 39420681
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtg 186  Q
    ||||||||||||| ||||||||||||||| || |||||||||    
T  39420722 aaaagtgtataaatgaaagagagagaaaaataattttgagtg 39420681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 4466144 - 4466208
Alignment:
Q  163 gagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||||||| | | ||||||| | ||| |||||||||| | ||||||| ||||||||||||||    
T  4466144 gagagagaaaaatgggtttgagtacctttgttaagtattggtccattcttctttatcataaatgt 4466208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 5115847 - 5115879
Alignment:
Q  195 aagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||||||||||| ||||||||||||||    
T  5115847 aagtattgatgcattcttctttatcataaatgt 5115879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 5359244 - 5359280
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaa 173  Q
    |||||||||||||||||||||  ||||||||||||||    
T  5359244 agattaagaaaagtgtataaataaaagagagagaaaa 5359280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 16040195 - 16040131
Alignment:
Q  163 gagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||||||| | ||||| ||||  ||| |||||||||| | ||||||| ||||||||||||||    
T  16040195 gagagagaaaaatggttttaagtgtctttgttaagtattggttcattcttctttatcataaatgt 16040131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 225
Target Start/End: Complemental strand, 16956679 - 16956599
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaat 225  Q
    ||||||||||||  |||||  |||||||| | | ||||||||  ||| |||||||||  ||||||||| ||||||||||||    
T  16956679 aaaagtgtataagtgaaaggaagagaaaaatgggtttgagtgtctttattaagtatttgtgcattcttatttatcataaat 16956599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 18186226 - 18186258
Alignment:
Q  193 ttaagtattgatgcattcttttttatcataaat 225  Q
    ||||||||||| |||||||||||||||||||||    
T  18186226 ttaagtattgacgcattcttttttatcataaat 18186258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 52382408 - 52382440
Alignment:
Q  195 aagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||||||||||| ||||||||||||||    
T  52382408 aagtattgatgcattcttctttatcataaatgt 52382440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 52432454 - 52432366
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||| || |||||||| |||  |||||||||| |  |||| |||||  || |||||||||||||||||||||  || |||||||||    
T  52432454 attaagacaaatgtataaatgaagaagagagaaaaatgattttaagtgctcttgttaagtattgatgcattctttactaccataaatgt 52432366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 32977754 - 32977843
Alignment:
Q  138 gattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||| ||||||||||||||| || ||||||||||||||    
T  32977754 gattaagaaaagtgtataaagtaaagagggagaaaaatagttttgagtgcatttttcaagtattgatgcatttttctttatcataaatgt 32977843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 53051170 - 53051080
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||| |||||||  ||||||||| ||||||||||||||    
T  53051170 agattaagaaaagtgtataaagtaaagagagagaaaaatagttttgagtgcctttttcaagtatttgtgcattcttgtttatcataaatgt 53051080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 1334744 - 1334834
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||||||||| ||||||| ||||||||||||||| || |||||| ||| ||| | |||||||| ||||||||| ||||||||||||||    
T  1334744 agattaagaaaagcgtataaatgaaagagagagaaaaataattttgaatgcctttatcaagtattggtgcattcttctttatcataaatgt 1334834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 51165094 - 51165006
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||||||||||||  |||||||||||||| || |||||||||  ||| | |||||||| ||||||||| ||||||||||||||    
T  51165094 attaagaaaagtgtataaataaaagagagagaaaaataattttgagtgtctttatcaagtattggtgcattcttctttatcataaatgt 51165006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 38600769 - 38600859
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||||||||||||||||| |||| |||||||||| |  |||||||| | ||| | |||||||| ||||||||| |||| |||||||||    
T  38600769 agattaagaaaagtgtataaatgaaaaagagagaaaaatgattttgagtccctttatcaagtattggtgcattcttctttaccataaatgt 38600859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 53754028 - 53754117
Alignment:
Q  138 gattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||| ||||||||||||| |||| |||||||||| |  |||||||||  |||  ||||||||| ||||||||| ||||||||||||||    
T  53754028 gattaaaaaaagtgtataaatgaaatagagagaaaaatgattttgagtgtctttggtaagtattggtgcattcttctttatcataaatgt 53754117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 9017943 - 9017871
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    ||||| |||| |||||||| ||||||||||||||| ||||||| ||||| ||| |||||||||| ||||||||    
T  9017943 attaaaaaaaatgtataaatgaaagagagagaaaaatagttttaagtgcttttgttaagtattggtgcattct 9017871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 54783105 - 54783035
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcatt 209  Q
    |||||||||| |||||||| ||| ||||||||||| ||||||| |||||| || |||||||||| ||||||    
T  54783105 attaagaaaaatgtataaatgaatgagagagaaaaatagttttaagtgcacttcttaagtattggtgcatt 54783035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 9218280 - 9218200
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatg 226  Q
    ||||||||||||  ||||||||||||||| ||||||||||||   |  |||||||||| |||||||||| ||||||||||||    
T  9218280 aaaagtgtataagtgaaagagagagaaaaatagttttgagtg-tctcgttaagtattggtgcattctttcttatcataaatg 9218200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 54021421 - 54021511
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||| |||||||||||||||  |||||||||||||| |  |||||||||  ||| | || ||||| ||||||||| ||||| ||||||||    
T  54021421 agattgagaaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttatcaaatattgttgcattcttctttattataaatgt 54021511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 33994796 - 33994727
Alignment:
Q  142 aagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    ||||||| |||||||| ||| ||||||||||| || |||| |||||| || |||||||||| ||||||||    
T  33994796 aagaaaaatgtataaatgaaggagagagaaaaataattttaagtgcacttgttaagtattggtgcattct 33994727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 48744402 - 48744329
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaat-tagttttgagtgcattttttaagtattgatgcattct 211  Q
    ||||||||||||||||||| |||  ||| | ||||  ||||||| ||||||||| |||||||||||||||||||    
T  48744402 attaagaaaagtgtataaatgaagaagaaaaaaaaaatagttttaagtgcatttgttaagtattgatgcattct 48744329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 48409728 - 48409638
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaatta--gttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||| |||||||| |||||||||||| ||  |  ||||||||||  ||| | |||||||| || |||||| ||||||||||||||    
T  48409728 attaagaaaaatgtataaatgaaagagagagagaaagattgttttgagtgtctttgtcaagtattggtggattcttctttatcataaatgt 48409638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 226
Target Start/End: Original strand, 54845481 - 54845568
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatg 226  Q
    |||||||||  |||||||| ||| ||||||||||| ||||||| ||||  ||| ||||| || |||||||||| |  |||||||||||    
T  54845481 attaagaaatatgtataaatgaaggagagagaaaaatagttttaagtgtttttgttaaggatcgatgcattctctagtatcataaatg 54845568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 41287393 - 41287316
Alignment:
Q  150 tgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||  ||||||||||||||| | ||||||| |   ||| | ||||||||||||||| || ||||||||||||||    
T  41287393 tgtataagtgaaagagagagaaaaatggttttgactatctttgtcaagtattgatgcattattctttatcataaatgt 41287316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 2868716 - 2868644
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    |||||||||| |||||||| ||| ||||||||||| | ||||| ||| | ||| ||| |||||| ||||||||    
T  2868716 attaagaaaaatgtataaatgaaggagagagaaaaatggttttaagttcttttgttatgtattgctgcattct 2868644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 17274823 - 17274751
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    |||||||||| |||||||| ||| ||| ||||||| ||||||| | |||| |  |||| ||||||||||||||    
T  17274823 attaagaaaaatgtataaatgaaggagggagaaaaatagttttaaatgcactgattaaatattgatgcattct 17274751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 17776959 - 17777031
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    ||||| |||| |||||||| ||| ||||||||||| | |||||  |||| |||||||||||||  ||||||||    
T  17776959 attaaaaaaaatgtataaatgaatgagagagaaaaatggttttaggtgctttttttaagtatttgtgcattct 17777031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 19078260 - 19078332
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    ||||| |||| |||||||| ||| ||||||||||| | |||||  |||| |||||||||||||  ||||||||    
T  19078260 attaaaaaaaatgtataaatgaatgagagagaaaaatggttttaggtgctttttttaagtatttgtgcattct 19078332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 54122189 - 54122261
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    ||||||| || |||||||| ||| ||||||||||| ||||||| | ||  ||| |||||||||| ||||||||    
T  54122189 attaagacaaatgtataaatgaaggagagagaaaaatagttttaaatgtttttgttaagtattggtgcattct 54122261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 29550642 - 29550780
Alignment:
Q  89 actactcgctcggtcctagtttaacggagccaattttacattttattaagattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgca 188  Q
    ||||||| ||| |||| ||||||||  | |||||||| ||||| |   |||||||||||| |||||||||||||||||||||||| |||||||||||||     
T  29550642 actactccctccgtcccagtttaacttaaccaattttccatttcacacagattaagaaaaatgtataaaggaaagagagagaaaaatagttttgagtgcc 29550741  T
Q  189 ttttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||||||||||  |  || ||||||||||||||    
T  29550742 ttttttaagtattgatgtttcattctttatcataaatgt 29550780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 101 - 225
Target Start/End: Original strand, 10099652 - 10099776
Alignment:
Q  101 gtcctagtttaacggagccaattttacattttattaagattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtat 200  Q
    |||| |||||||| ||| |||||||  |||| ||  |||||||||| ||||||||||||||||||| | |||| |||||||||||| |||||||||||||    
T  10099652 gtcccagtttaactgagtcaattttctatttcatacagattaagaagagtgtataaaggaaagagaaaaaaaaatagttttgagtgtattttttaagtat 10099751  T
Q  201 tgatgcattcttttttatcataaat 225  Q
    || |||||| || ||||||||||||    
T  10099752 tggtgcatttttctttatcataaat 10099776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 25149596 - 25149505
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcatt-cttttttatcataaatgt 227  Q
    |||||||||||||||||||| | |||||||||||||| ||||||||||||| |||||||||||||| |||||| || |||||||||||||||    
T  25149596 agattaagaaaagtgtataacgaaaagagagagaaaaatagttttgagtgccttttttaagtattggtgcattcctcttttatcataaatgt 25149505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 91 - 227
Target Start/End: Complemental strand, 44633346 - 44633210
Alignment:
Q  91 tactcgctcggtcctagtttaacggagccaattttacattttattaagattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcatt 190  Q
    ||||| ||| |||| |||||||| ||||||||||| ||||| |   ||||||||| |||||||||||| ||||| |||||||| ||||||||||||  ||    
T  44633346 tactccctccgtcccagtttaactgagccaattttccatttcacacagattaagataagtgtataaagaaaagaaagagaaaaatagttttgagtgtctt 44633247  T
Q  191 ttttaagtattgatgcattcttttttatcataaatgt 227  Q
    | | |||||||| ||||||||| ||||| ||||||||    
T  44633246 tgtcaagtattggtgcattcttctttatgataaatgt 44633210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 225
Target Start/End: Complemental strand, 28280017 - 28279893
Alignment:
Q  101 gtcctagtttaacggagccaattttacattttattaagattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtat 200  Q
    |||| |||||||| ||||||||||| ||||| |   |||||||||||| ||||||||| ||||||| ||| || ||||||||||||  ||| ||||||||    
T  28280017 gtcccagtttaactgagccaattttccatttcacagagattaagaaaaatgtataaagaaaagagaaagagaaatagttttgagtgtctttgttaagtat 28279918  T
Q  201 tgatgcattcttttttatcataaat 225  Q
    || |||||| || ||||||||||||    
T  28279917 tggtgcatttttctttatcataaat 28279893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 35029179 - 35029089
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||||||||||||||||| |||| |||||||||| |||||| |||||  ||| | |||||||  | ||||||| ||||||||||||||    
T  35029179 agattaagaaaagtgtataaatgaaaaagagagaaaaatagtttcgagtgtctttgtcaagtattagtacattcttctttatcataaatgt 35029089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 48400594 - 48400684
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||||| |||||||| ||||||||||||||| |  |||| | ||| ||| | ||||||||||| |||||| ||||||||||||||    
T  48400594 agattaagaaaaatgtataaatgaaagagagagaaaaatgatttttaatgcttttatcaagtattgatgtattcttctttatcataaatgt 48400684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 49401800 - 49401710
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||||| ||||||||| |||||||||||||| ||||||||| ||   |||| |||||||||| |||| || ||||| ||||||||    
T  49401800 agattaagaaaaatgtataaagtaaagagagagaaaaatagttttgaatgtccttttcaagtattgatacattgttctttattataaatgt 49401710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 34790916 - 34791001
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaa 224  Q
    ||||||||||||||||||| ||||| ||||||||| |  |||||||||| ||| | |||||||  ||||||||| |||||||||||    
T  34790916 attaagaaaagtgtataaatgaaagtgagagaaaaatgattttgagtgcttttatcaagtatttgtgcattcttctttatcataaa 34791001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 42051621 - 42051709
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||||||||||||||| |||||||| |||||| | ||||| ||||  |||   |||||||| ||||||||| ||||||||||||||    
T  42051621 attaagaaaagtgtataaatgaaagagatagaaaaatggtttttagtgtctttagcaagtattggtgcattcttctttatcataaatgt 42051709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 35998080 - 35998170
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||||||||||||||||| ||||| ||  ||||| || |||||||||  ||| | |||||||| | ||||||| ||||||||||||||    
T  35998080 agattaagaaaagtgtataaatgaaagcgaacgaaaaataattttgagtgtctttatcaagtattggtacattcttctttatcataaatgt 35998170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 4354592 - 4354502
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagaga--aaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||| | |||||| ||||||||||||  ||| ||||||||||||  |||||||| ||||| |||| | || ||||||||||||||    
T  4354592 attaagaaaaatatataaaagaaagagagagagaaaaatagttttgagtgttttttttaaatattggtgcactattctttatcataaatgt 4354502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 13719911 - 13719829
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||||||||| |||||||| |||||| | | ||||||||  ||| ||||||| ||||| ||| || ||||||||||||||    
T  13719911 aaaagtgtataaatgaaagagaaagaaaaatgggtttgagtgtctttgttaagtaatgatgtattattctttatcataaatgt 13719829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 42367931 - 42367869
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtatt 201  Q
    |||||||||| |||||||| ||| ||||||||||| ||||||| |||||| || |||||||||    
T  42367931 attaagaaaaatgtataaatgaatgagagagaaaaatagttttaagtgcacttgttaagtatt 42367869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 8759915 - 8759834
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatg 226  Q
    ||||||||||||| ||||||||||||||| | | ||| ||| || || | || |||||||||||| || |||||||||||||    
T  8759915 aaaagtgtataaatgaaagagagagaaaaatgggtttcagttcacttatcaactattgatgcatttttctttatcataaatg 8759834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 28330930 - 28330849
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatg 226  Q
    ||||||||||||  ||||||||||||||| | | |||||||||  || | || ||||| ||||||||| |||||||||||||    
T  28330930 aaaagtgtataagtgaaagagagagaaaaatgggtttgagtgcccttatcaactattggtgcattcttctttatcataaatg 28330849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 38320047 - 38319966
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatg 226  Q
    ||||||||||||  ||||||||||||||| | | |||||||||  || | || ||||| ||||||||| |||||||||||||    
T  38320047 aaaagtgtataagtgaaagagagagaaaaatgggtttgagtgcccttatcaactattggtgcattcttctttatcataaatg 38319966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 41203879 - 41203806
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattctt 212  Q
    |||||||||| |||||||| ||| |||| |||||| | ||||| |||||  || ||||||||||||||||||||    
T  41203879 attaagaaaaatgtataaatgaaggagatagaaaaatggtttttagtgctcttgttaagtattgatgcattctt 41203806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 42670348 - 42670420
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    |||||||||| ||||||||  || ||||||||||| |||| || |||||| || |||||||||| ||||||||    
T  42670348 attaagaaaaatgtataaataaatgagagagaaaaatagtcttaagtgcacttcttaagtattggtgcattct 42670420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 17237185 - 17237098
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatg 226  Q
    |||||||||| | |||||| ||| ||||||||||| ||||||| ||||  ||| |||||||||  || |||||||  |||||||||||    
T  17237185 attaagaaaaatatataaatgaaggagagagaaaaatagttttaagtgattttgttaagtattagtggattctttactatcataaatg 17237098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 54729452 - 54729511
Alignment:
Q  142 aagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtatt 201  Q
    ||||||| |||||||| ||||||||||||||| ||||||| ||||  ||| |||||||||    
T  54729452 aagaaaaatgtataaatgaaagagagagaaaaatagttttaagtgtttttgttaagtatt 54729511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 55360311 - 55360401
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||||| |||||||| |||||||| || ||| | ||  ||||||  ||| | ||||||||  |||||||| ||||||||||||||    
T  55360311 agattaagaaaaatgtataaacgaaagagaaagtaaaatggtggtgagtgtctttgtcaagtattggcgcattcttctttatcataaatgt 55360401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 8295171 - 8295099
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    |||||||||| |||||||| ||||||||||||||| | ||||| ||| |  ||  ||||||||| ||||||||    
T  8295171 attaagaaaaatgtataaatgaaagagagagaaaaattgttttaagtcctcttgataagtattggtgcattct 8295099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 41436623 - 41436551
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    ||||||||||||||||||  || ||||||| |||| | ||||| ||||| ||| ||| |||||| ||||||||    
T  41436623 attaagaaaagtgtataagtgagagagagaaaaaaatggttttaagtgcttttgttatgtattggtgcattct 41436551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 47787812 - 47787900
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||| |||||||| |||  ||||| |||| ||||||| || ||| || ||||||| |||||||| |||   ||||||||||||    
T  47787812 attaagaaaaatgtataaatgaagaagagataaaaatagttttaagggcacttgttaagtactgatgcatccttcactatcataaatgt 47787900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0685 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 6315 - 6453
Alignment:
Q  89 actactcgctcggtcctagtttaacggagccaattttacattttattaagattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgca 188  Q
    ||||||| ||| |||| ||||||||  | |||||||| ||||| |   |||||||||||| ||||||||||||||||||||| |  |  |||||||||      
T  6315 actactccctccgtcccagtttaacttaaccaattttccatttcacacagattaagaaaaatgtataaaggaaagagagagagagatgattttgagtgtc 6414  T
Q  189 ttttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||  | |||||||||||||||||| ||||||||||||||    
T  6415 ttagtcaagtattgatgcattcttctttatcataaatgt 6453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 3166071 - 3166161
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||| ||||||||||||| ||||||||||||||| ||||||||||||  |||   ||||||||||| ||| || ||||||||||||||    
T  3166071 agattaaaaaaagtgtataaatgaaagagagagaaaaatagttttgagtgtctttaacaagtattgatgtatttttctttatcataaatgt 3166161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 3874016 - 3874103
Alignment:
Q  140 ttaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||| ||||||||||||| |||||||||| |||| |  |||||||||  ||| | |||||||| |||||| || ||||||||||||||    
T  3874016 ttaaaaaaagtgtataaatgaaagagagaaaaaaatgattttgagtgtctttgtcaagtattggtgcattattctttatcataaatgt 3874103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 34803676 - 34803741
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattc 210  Q
    ||||||||||||||||||||||||| ||| | ||||||||||  ||| | || |||||||||||||    
T  34803676 aaaagtgtataaaggaaagagagaggaaaatggttttgagtgtctttatcaactattgatgcattc 34803741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 31265921 - 31265849
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    ||||||| || |||||||| ||| ||||||||||| ||||||| |||||  || |||||||||| ||||||||    
T  31265921 attaagacaaatgtataaatgaaggagagagaaaaatagttttaagtgctcttgttaagtattggtgcattct 31265849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 33921458 - 33921522
Alignment:
Q  163 gagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||||||| | ||||||||||  ||| |||||||||| | ||||||| ||||||||||||||    
T  33921458 gagagagaaaaatggttttgagtgtgtttgttaagtattggtccattcttctttatcataaatgt 33921522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 8232326 - 8232364
Alignment:
Q  189 ttttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  8232326 ttttttaagtattggtgcattcttctttatcataaatgt 8232364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 9354429 - 9354493
Alignment:
Q  163 gagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    ||||||||||| | ||||||||||  ||| |||| ||||| | ||||||| ||||||||||||||    
T  9354429 gagagagaaaaatggttttgagtgtctttgttaaatattggtccattcttctttatcataaatgt 9354493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 225
Target Start/End: Complemental strand, 20027718 - 20027638
Alignment:
Q  145 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaat 225  Q
    ||||||||||||  |||||| | || ||| |  |||||||||  ||| |||||||||| ||||||||| ||||||||||||    
T  20027718 aaaagtgtataagtgaaagaaatagcaaaatgattttgagtgtctttgttaagtattggtgcattcttctttatcataaat 20027638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 352426 - 352514
Alignment:
Q  137 agattaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||||||||||||||  ||||||||| |||  || |||||||||  ||| |||||||||| ||||||||| ||||||||||||||    
T  352426 agattaagaaaagtgtataaataaaagagagaaaaa--taattttgagtgtctttgttaagtattggtgcattcttctttatcataaatgt 352514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 5958 - 5872
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattcttttttatcataaatgt 227  Q
    |||||||||||||||||||  ||||||||| ||||| | | |||||||  ||| | |||||||||||||||  | ||||||||||||||    
T  5958 attaagaaaagtgtataaataaaagagaga-aaaatga-tcttgagtgtctttatcaagtattgatgcattgctctttatcataaatgt 5872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 14598 - 14526
Alignment:
Q  139 attaagaaaagtgtataaaggaaagagagagaaaattagttttgagtgcattttttaagtattgatgcattct 211  Q
    |||||||||| |||||||| ||| | |||| |||| ||||||| | |||| ||  ||||||||||||||||||    
T  14598 attaagaaaaatgtataaatgaaggggagataaaaatagttttaattgcacttgctaagtattgatgcattct 14526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 5643 times since January 2019
Visitors: 5758