View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0812_low_139 (Length: 285)

Name: NF0812_low_139
Description: NF0812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0812_low_139
NF0812_low_139
[»] chr5 (10 HSPs)
chr5 (1-208)||(9619008-9619222)
chr5 (98-208)||(19969339-19969449)
chr5 (87-200)||(1347721-1347834)
chr5 (87-154)||(19807073-19807140)
chr5 (92-156)||(20112126-20112190)
chr5 (105-199)||(13711924-13712018)
chr5 (88-149)||(17392589-17392650)
chr5 (88-133)||(27358161-27358206)
chr5 (88-132)||(19653756-19653800)
chr5 (88-200)||(26536162-26536274)
[»] chr6 (1 HSPs)
chr6 (98-170)||(16258249-16258321)
[»] scaffold0009 (3 HSPs)
scaffold0009 (102-160)||(34169-34227)
scaffold0009 (102-160)||(21922-21980)
scaffold0009 (102-160)||(40799-40857)
[»] chr3 (2 HSPs)
chr3 (120-170)||(32226768-32226818)
chr3 (98-163)||(32241837-32241902)
[»] chr1 (1 HSPs)
chr1 (88-149)||(26052813-26052874)


Alignment Details
Target: chr5 (Bit Score: 181; Significance: 8e-98; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 9619008 - 9619222
Alignment:
Q  1 cgtagatagtgttaatggtttttatttattctctc-------gttttaacaaatcctattttatttttgattgacagtggacaagcgattcagaaaccaa 93  Q
    |||||||||||||||||| ||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9619008 cgtagatagtgttaatggcttttatttattctctctttaaccgttttaacaaatcctattttatttttgattgacagtggacaagcgattcagaaaccaa 9619107  T
Q  94 agaggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatattttacactatctagatgtggaacctgattttcga 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9619108 agaggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaacattttacactatctagatgtggaacctgattttcga 9619207  T
Q  194 tttgcaaggtatatt 208  Q
    |||||||||||||||    
T  9619208 tttgcaaggtatatt 9619222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 208
Target Start/End: Complemental strand, 19969449 - 19969339
Alignment:
Q  98 gattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatattttacactatctagatgtggaacctgattttcgatttg 197  Q
    ||||||||||||||| |||||||||| ||||||||||  |||||| | |||||||||||||||  |||||||| || ||||||| |||||||||||||||    
T  19969449 gattggaaatacccatatcatgttcccgaatgtgttttgtctcatcttacaacatgtaatattacacactatcaagctgtggaagctgattttcgatttg 19969350  T
Q  198 caaggtatatt 208  Q
    ||| |||||||    
T  19969349 caacgtatatt 19969339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 87 - 200
Target Start/End: Complemental strand, 1347834 - 1347721
Alignment:
Q  87 aaaccaaagaggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatattttacactatctagatgtggaacctga 186  Q
    ||||||||| |||||||| ||||||| ||||||||||| |||||||||| |||||| | ||||||||||||||  ||||||||| || ||||||| ||||    
T  1347834 aaaccaaagcggattggatatacccatatcatgttcctcaatgtgtttcctctcatcttacaacatgtaatatcatacactatcaagctgtggaagctga 1347735  T
Q  187 ttttcgatttgcaa 200  Q
    ||| ||||||||||    
T  1347734 tttccgatttgcaa 1347721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 154
Target Start/End: Original strand, 19807073 - 19807140
Alignment:
Q  87 aaaccaaagaggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgt 154  Q
    |||||| | ||||||||||| ||||| |||||||||||||||||||| | ||| || |||||||||||    
T  19807073 aaaccacaaaggattggaaacacccatatcatgttcctgaatgtgttacctctaatctaacaacatgt 19807140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 20112126 - 20112190
Alignment:
Q  92 aaagaggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaa 156  Q
    |||||| |||||||||||||| || ||||||||||||||||||  |||| | | |||||||||||    
T  20112126 aaagagaattggaaatacccatatgatgttcctgaatgtgttttgtctcgtctcacaacatgtaa 20112190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 13712018 - 13711924
Alignment:
Q  105 aatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatattttacactatctagatgtggaacctgattttcgatttgca 199  Q
    |||||||  ||||||||||| || ||||||| |||||||||||||| |||   ||| || |||||  || ||||||| ||||||| |||||||||    
T  13712018 aataccctgatcatgttcctaaaggtgtttcctctcatttaacaacttgtcgaattataaactatgaagttgtggaagctgatttccgatttgca 13711924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 17392589 - 17392650
Alignment:
Q  88 aaccaaagaggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaa 149  Q
    ||||| |||| ||||| |||| ||| |||||||||| ||||||||||| |||||| ||||||    
T  17392589 aaccatagagcattgggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaa 17392650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 27358206 - 27358161
Alignment:
Q  88 aaccaaagaggattggaaatacccacatcatgttcctgaatgtgtt 133  Q
    ||||||||| ||| ||||||||||| ||||||||||||| ||||||    
T  27358206 aaccaaagatgataggaaatacccagatcatgttcctgagtgtgtt 27358161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 19653800 - 19653756
Alignment:
Q  88 aaccaaagaggattggaaatacccacatcatgttcctgaatgtgt 132  Q
    ||||||||  |||||||||||||||  ||||||||||||||||||    
T  19653800 aaccaaagcagattggaaatacccatgtcatgttcctgaatgtgt 19653756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 26536162 - 26536274
Alignment:
Q  88 aaccaaagaggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatattttacactatctagatgtggaacctgat 187  Q
    ||||||| | ||||||||||||||| |||||||||||||  |||||   |||||| | ||||||||||  ||| || |||||  || ||  ||| | |||    
T  26536162 aaccaaacatgattggaaatacccagatcatgttcctgagagtgttaggtctcatcttacaacatgtagcattataaactatgaagctgcagaagcggat 26536261  T
Q  188 tttcgatttgcaa 200  Q
    |||||||||||||    
T  26536262 tttcgatttgcaa 26536274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 16258321 - 16258249
Alignment:
Q  98 gattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatattttacactatc 170  Q
    ||||||||||||||| ||   |||||||| ||||||||||| |||||||||||||| || |||||| ||||||    
T  16258321 gattggaaatacccatatacggttcctgagtgtgtttcatcccatttaacaacatgcaaaattttagactatc 16258249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 34169 - 34227
Alignment:
Q  102 ggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatatt 160  Q
    ||||||||| | ||||| ||||||||||||||||||||||| | ||||| |||||||||    
T  34169 ggaaataccgaaatcatattcctgaatgtgtttcatctcatcttacaacgtgtaatatt 34227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 21922 - 21980
Alignment:
Q  102 ggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatatt 160  Q
    ||||||||| | ||||| |||||||||||||||| |||||| | |||||||| ||||||    
T  21922 ggaaataccaagatcatattcctgaatgtgtttcgtctcatcttacaacatgcaatatt 21980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 40799 - 40857
Alignment:
Q  102 ggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatatt 160  Q
    ||||||||| | |||||||||||||||||||||| |||||| | ||||||  |||||||    
T  40799 ggaaataccaagatcatgttcctgaatgtgtttcgtctcatcttacaacaattaatatt 40857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 32226768 - 32226818
Alignment:
Q  120 ttcctgaatgtgtttcatctcatttaacaacatgtaatattttacactatc 170  Q
    ||||||||||||||||||| |||||||||||||| || |||||| ||||||    
T  32226768 ttcctgaatgtgtttcatcccatttaacaacatgcaaaattttagactatc 32226818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 32241902 - 32241837
Alignment:
Q  98 gattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatatttta 163  Q
    ||||||||| ||||| ||   |||||||| ||||||||||| |||||||||||||| || ||||||    
T  32241902 gattggaaacacccatatacggttcctgattgtgtttcatcccatttaacaacatgcaaaatttta 32241837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 26052874 - 26052813
Alignment:
Q  88 aaccaaagaggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaa 149  Q
    ||||| |||| ||||| |||| ||| |||||||||| |||||||||||||||||| ||||||    
T  26052874 aaccatagagcattgggaatatccagatcatgttccagaatgtgtttcatctcatctaacaa 26052813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 5781 times since January 2019
Visitors: 5759